EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPOG00000000870 (Gene tree)
Gene ID: 100720166
Gene Symbol: VARS
Alias: VARS2
Full Name: valyl-tRNA synthetase
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Plus strand
Length: 10660 bases
Position: chrDS562870.1:41163519-41174178
Accession: 100720166
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000032900	tRNA-synt_1g	PF09334.11	3.8e-11	1	1
ENSCPOP00000025775	tRNA-synt_1g	PF09334.11	4.1e-11	1	1
ENSCPOP00000027361	tRNA-synt_1g	PF09334.11	4.3e-11	1	1
ENSCPOP00000000783	tRNA-synt_1g	PF09334.11	4.3e-11	1	1
ENSCPOP00000000783	Anticodon_1	PF08264.13	7e-34	1	1
ENSCPOP00000027361	Anticodon_1	PF08264.13	7.2e-34	1	1
ENSCPOP00000032900	Anticodon_1	PF08264.13	7.2e-34	1	1
ENSCPOP00000025775	Anticodon_1	PF08264.13	7.7e-34	1	1
ENSCPOP00000032900	tRNA-synt_1	PF00133.22	6.5e-203	1	1
ENSCPOP00000025775	tRNA-synt_1	PF00133.22	6.9e-203	1	1
ENSCPOP00000000783	tRNA-synt_1	PF00133.22	1e-185	1	2
ENSCPOP00000000783	tRNA-synt_1	PF00133.22	1e-185	2	2
ENSCPOP00000027361	tRNA-synt_1	PF00133.22	1e-185	1	2
ENSCPOP00000027361	tRNA-synt_1	PF00133.22	1e-185	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000000876	VARS-203	3642	-	ENSCPOP00000000783	1213 (aa)	-	H0UUX4
ENSCPOT00000036544	VARS-202	4139	XM_003473973	ENSCPOP00000032900	1264 (aa)	XP_003474021	A0A286Y5Q0
ENSCPOT00000043758	VARS-201	4694	-	ENSCPOP00000025775	1288 (aa)	-	A0A286XJV4
ENSCPOT00000041625	VARS-204	3636	-	ENSCPOP00000027361	1212 (aa)	-	A0A286XPE0

Gene Model

Click here to download ENSCPOG00000000870's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000000870's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPOG00000000870	VARS	81	51.252	ENSCPOG00000021834	VARS2	95	51.949

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000000870	VARS	100	91.535	ENSG00000204394	VARS	100	91.535	Homo_sapiens
ENSCPOG00000000870	VARS	98	63.534	ENSAPOG00000020691	vars	99	63.651	Acanthochromis_polyacanthus
ENSCPOG00000000870	VARS	98	63.534	ENSAPOG00000020921	vars	99	63.651	Acanthochromis_polyacanthus
ENSCPOG00000000870	VARS	100	91.462	ENSAMEG00000006417	VARS	100	91.462	Ailuropoda_melanoleuca
ENSCPOG00000000870	VARS	100	64.448	ENSACIG00000013752	vars	100	64.734	Amphilophus_citrinellus
ENSCPOG00000000870	VARS	100	63.898	ENSAOCG00000002447	vars	100	63.501	Amphiprion_ocellaris
ENSCPOG00000000870	VARS	100	64.047	ENSAPEG00000010638	vars	99	64.258	Amphiprion_percula
ENSCPOG00000000870	VARS	100	64.016	ENSATEG00000020219	vars	100	64.016	Anabas_testudineus
ENSCPOG00000000870	VARS	90	69.818	ENSACAG00000029133	-	99	69.991	Anolis_carolinensis
ENSCPOG00000000870	VARS	100	92.168	ENSANAG00000015453	VARS	100	92.168	Aotus_nancymaae
ENSCPOG00000000870	VARS	100	64.264	ENSACLG00000025699	vars	97	64.546	Astatotilapia_calliptera
ENSCPOG00000000870	VARS	94	65.721	ENSAMXG00000017716	vars	95	65.888	Astyanax_mexicanus
ENSCPOG00000000870	VARS	100	91.772	ENSBTAG00000005631	VARS	100	91.772	Bos_taurus
ENSCPOG00000000870	VARS	100	91.930	ENSCJAG00000002604	VARS	100	91.930	Callithrix_jacchus
ENSCPOG00000000870	VARS	100	90.744	ENSCAFG00000000636	VARS	100	90.744	Canis_familiaris
ENSCPOG00000000870	VARS	94	90.963	ENSCAFG00020020790	VARS	96	90.963	Canis_lupus_dingo
ENSCPOG00000000870	VARS	100	91.772	ENSCHIG00000011008	VARS	100	91.772	Capra_hircus
ENSCPOG00000000870	VARS	100	91.930	ENSTSYG00000001567	VARS	100	91.930	Carlito_syrichta
ENSCPOG00000000870	VARS	91	98.529	ENSCAPG00000013736	VARS	100	99.722	Cavia_aperea
ENSCPOG00000000870	VARS	100	91.851	ENSCCAG00000035656	VARS	100	92.040	Cebus_capucinus
ENSCPOG00000000870	VARS	100	91.693	ENSCATG00000022394	VARS	100	91.693	Cercocebus_atys
ENSCPOG00000000870	VARS	90	90.017	ENSCLAG00000009470	VARS	95	90.017	Chinchilla_lanigera
ENSCPOG00000000870	VARS	100	91.693	ENSCSAG00000008784	VARS	100	91.693	Chlorocebus_sabaeus
ENSCPOG00000000870	VARS	77	74.333	ENSCPBG00000007943	VARS	96	74.333	Chrysemys_picta_bellii
ENSCPOG00000000870	VARS	100	92.009	ENSCANG00000033570	VARS	100	92.009	Colobus_angolensis_palliatus
ENSCPOG00000000870	VARS	100	91.060	ENSCGRG00001005686	Vars	100	91.060	Cricetulus_griseus_chok1gshd
ENSCPOG00000000870	VARS	92	86.348	ENSCGRG00000013352	Vars	78	86.348	Cricetulus_griseus_crigri
ENSCPOG00000000870	VARS	100	63.981	ENSCSEG00000019652	vars	100	64.297	Cynoglossus_semilaevis
ENSCPOG00000000870	VARS	100	64.451	ENSCVAG00000022398	vars	100	64.842	Cyprinodon_variegatus
ENSCPOG00000000870	VARS	100	64.701	ENSDARG00000044575	vars	100	64.829	Danio_rerio
ENSCPOG00000000870	VARS	84	91.627	ENSDORG00000016433	Vars	95	91.627	Dipodomys_ordii
ENSCPOG00000000870	VARS	68	86.232	ENSETEG00000003824	VARS	76	86.232	Echinops_telfairi
ENSCPOG00000000870	VARS	53	70.417	ENSEBUG00000007086	vars	84	69.459	Eptatretus_burgeri
ENSCPOG00000000870	VARS	60	61.813	ENSEBUG00000004637	vars	100	62.088	Eptatretus_burgeri
ENSCPOG00000000870	VARS	100	92.168	ENSEASG00005015673	VARS	100	92.168	Equus_asinus_asinus
ENSCPOG00000000870	VARS	100	91.542	ENSECAG00000014620	VARS	100	92.095	Equus_caballus
ENSCPOG00000000870	VARS	85	87.543	ENSEEUG00000004116	VARS	83	87.543	Erinaceus_europaeus
ENSCPOG00000000870	VARS	100	63.629	ENSELUG00000006550	vars	97	63.805	Esox_lucius
ENSCPOG00000000870	VARS	100	91.377	ENSFCAG00000004510	VARS	100	91.377	Felis_catus
ENSCPOG00000000870	VARS	82	92.577	ENSFDAG00000011401	VARS	100	92.577	Fukomys_damarensis
ENSCPOG00000000870	VARS	100	64.724	ENSFHEG00000010672	vars	100	65.116	Fundulus_heteroclitus
ENSCPOG00000000870	VARS	92	65.417	ENSGMOG00000014908	vars	97	65.973	Gadus_morhua
ENSCPOG00000000870	VARS	100	64.903	ENSGAFG00000021630	vars	100	65.190	Gambusia_affinis
ENSCPOG00000000870	VARS	92	65.858	ENSGACG00000009601	vars	98	65.890	Gasterosteus_aculeatus
ENSCPOG00000000870	VARS	50	64.455	ENSGAGG00000006508	-	91	63.911	Gopherus_agassizii
ENSCPOG00000000870	VARS	100	91.851	ENSGGOG00000011364	VARS	100	91.851	Gorilla_gorilla
ENSCPOG00000000870	VARS	100	64.369	ENSHBUG00000017151	vars	97	64.651	Haplochromis_burtoni
ENSCPOG00000000870	VARS	100	91.297	ENSHGLG00000011646	VARS	100	91.377	Heterocephalus_glaber_female
ENSCPOG00000000870	VARS	93	83.555	ENSHGLG00100018062	VARS	100	83.555	Heterocephalus_glaber_male
ENSCPOG00000000870	VARS	99	64.308	ENSHCOG00000012198	vars	99	64.669	Hippocampus_comes
ENSCPOG00000000870	VARS	100	64.436	ENSIPUG00000005218	vars	100	64.436	Ictalurus_punctatus
ENSCPOG00000000870	VARS	100	92.648	ENSSTOG00000013112	VARS	100	92.648	Ictidomys_tridecemlineatus
ENSCPOG00000000870	VARS	100	89.873	ENSJJAG00000019749	-	100	89.953	Jaculus_jaculus
ENSCPOG00000000870	VARS	100	71.440	ENSJJAG00000015343	-	100	74.162	Jaculus_jaculus
ENSCPOG00000000870	VARS	100	64.179	ENSKMAG00000009455	vars	100	64.258	Kryptolebias_marmoratus
ENSCPOG00000000870	VARS	97	69.076	ENSLBEG00000010341	vars	100	63.428	Labrus_bergylta
ENSCPOG00000000870	VARS	94	62.695	ENSLACG00000015232	VARS	99	62.695	Latimeria_chalumnae
ENSCPOG00000000870	VARS	100	65.676	ENSLOCG00000004240	vars	100	65.938	Lepisosteus_oculatus
ENSCPOG00000000870	VARS	100	90.506	ENSLAFG00000023090	VARS	100	90.823	Loxodonta_africana
ENSCPOG00000000870	VARS	100	91.693	ENSMFAG00000001032	VARS	100	91.693	Macaca_fascicularis
ENSCPOG00000000870	VARS	100	91.693	ENSMMUG00000006828	VARS	100	91.693	Macaca_mulatta
ENSCPOG00000000870	VARS	100	91.693	ENSMNEG00000042072	VARS	100	91.693	Macaca_nemestrina
ENSCPOG00000000870	VARS	100	91.614	ENSMLEG00000039307	VARS	100	91.614	Mandrillus_leucophaeus
ENSCPOG00000000870	VARS	100	64.509	ENSMAMG00000003949	vars	100	65.031	Mastacembelus_armatus
ENSCPOG00000000870	VARS	100	64.369	ENSMZEG00005018327	vars	100	63.694	Maylandia_zebra
ENSCPOG00000000870	VARS	100	91.218	ENSMAUG00000006715	Vars	100	91.218	Mesocricetus_auratus
ENSCPOG00000000870	VARS	100	91.614	ENSMICG00000003548	VARS	100	92.537	Microcebus_murinus
ENSCPOG00000000870	VARS	100	88.449	ENSMOCG00000015404	Vars	100	88.687	Microtus_ochrogaster
ENSCPOG00000000870	VARS	100	63.443	ENSMMOG00000015801	vars	100	63.522	Mola_mola
ENSCPOG00000000870	VARS	100	85.364	ENSMODG00000015204	-	100	85.364	Monodelphis_domestica
ENSCPOG00000000870	VARS	99	64.214	ENSMALG00000022532	vars	99	64.496	Monopterus_albus
ENSCPOG00000000870	VARS	100	91.614	MGP_CAROLIEiJ_G0021491	Vars	100	91.930	Mus_caroli
ENSCPOG00000000870	VARS	100	91.535	ENSMUSG00000007029	Vars	100	91.851	Mus_musculus
ENSCPOG00000000870	VARS	100	91.139	MGP_PahariEiJ_G0020486	Vars	100	91.456	Mus_pahari
ENSCPOG00000000870	VARS	100	91.614	MGP_SPRETEiJ_G0022396	Vars	100	91.930	Mus_spretus
ENSCPOG00000000870	VARS	100	91.377	ENSMPUG00000010821	VARS	100	91.377	Mustela_putorius_furo
ENSCPOG00000000870	VARS	78	90.587	ENSMLUG00000013126	VARS	100	90.587	Myotis_lucifugus
ENSCPOG00000000870	VARS	100	91.060	ENSNGAG00000012151	Vars	100	91.456	Nannospalax_galili
ENSCPOG00000000870	VARS	100	64.136	ENSNBRG00000020520	vars	100	64.419	Neolamprologus_brichardi
ENSCPOG00000000870	VARS	100	91.139	ENSNLEG00000006351	VARS	100	91.139	Nomascus_leucogenys
ENSCPOG00000000870	VARS	100	82.437	ENSMEUG00000011378	VARS	100	82.437	Notamacropus_eugenii
ENSCPOG00000000870	VARS	100	92.009	ENSOPRG00000003607	VARS	100	92.009	Ochotona_princeps
ENSCPOG00000000870	VARS	100	93.196	ENSODEG00000017681	VARS	100	93.196	Octodon_degus
ENSCPOG00000000870	VARS	100	64.738	ENSONIG00000013064	vars	99	68.343	Oreochromis_niloticus
ENSCPOG00000000870	VARS	77	78.121	ENSOANG00000005400	VARS	98	78.002	Ornithorhynchus_anatinus
ENSCPOG00000000870	VARS	100	89.889	ENSOCUG00000022463	VARS	100	89.889	Oryctolagus_cuniculus
ENSCPOG00000000870	VARS	100	64.055	ENSORLG00000013063	vars	100	64.335	Oryzias_latipes
ENSCPOG00000000870	VARS	100	64.729	ENSORLG00020003504	vars	100	64.938	Oryzias_latipes_hni
ENSCPOG00000000870	VARS	100	64.628	ENSORLG00015009001	vars	100	64.838	Oryzias_latipes_hsok
ENSCPOG00000000870	VARS	100	64.469	ENSOMEG00000015016	vars	100	64.756	Oryzias_melastigma
ENSCPOG00000000870	VARS	100	90.981	ENSOGAG00000007515	VARS	100	90.981	Otolemur_garnettii
ENSCPOG00000000870	VARS	100	91.772	ENSPPAG00000034012	VARS	100	91.772	Pan_paniscus
ENSCPOG00000000870	VARS	100	91.456	ENSPPRG00000014855	VARS	100	91.456	Panthera_pardus
ENSCPOG00000000870	VARS	85	92.100	ENSPTIG00000010462	VARS	95	92.125	Panthera_tigris_altaica
ENSCPOG00000000870	VARS	100	91.851	ENSPTRG00000017985	VARS	100	91.851	Pan_troglodytes
ENSCPOG00000000870	VARS	100	89.984	ENSPANG00000014565	VARS	100	89.984	Papio_anubis
ENSCPOG00000000870	VARS	100	63.320	ENSPKIG00000016304	vars	100	63.608	Paramormyrops_kingsleyae
ENSCPOG00000000870	VARS	100	65.379	ENSPMGG00000023909	vars	100	65.615	Periophthalmus_magnuspinnatus
ENSCPOG00000000870	VARS	100	91.772	ENSPEMG00000006639	Vars	100	91.772	Peromyscus_maniculatus_bairdii
ENSCPOG00000000870	VARS	100	85.206	ENSPCIG00000018553	VARS	100	85.206	Phascolarctos_cinereus
ENSCPOG00000000870	VARS	100	65.058	ENSPFOG00000015690	vars	100	65.346	Poecilia_formosa
ENSCPOG00000000870	VARS	100	65.149	ENSPLAG00000009590	vars	100	65.423	Poecilia_latipinna
ENSCPOG00000000870	VARS	100	65.058	ENSPMEG00000004708	vars	100	65.346	Poecilia_mexicana
ENSCPOG00000000870	VARS	100	62.972	ENSPREG00000013264	vars	100	62.972	Poecilia_reticulata
ENSCPOG00000000870	VARS	100	90.032	ENSPPYG00000016460	VARS	100	90.032	Pongo_abelii
ENSCPOG00000000870	VARS	86	88.869	ENSPCAG00000013565	VARS	86	88.869	Procavia_capensis
ENSCPOG00000000870	VARS	100	91.542	ENSPCOG00000010942	VARS	100	92.095	Propithecus_coquereli
ENSCPOG00000000870	VARS	100	87.816	ENSPVAG00000012403	VARS	100	87.816	Pteropus_vampyrus
ENSCPOG00000000870	VARS	100	64.369	ENSPNYG00000022511	vars	100	64.651	Pundamilia_nyererei
ENSCPOG00000000870	VARS	100	64.856	ENSPNAG00000020962	vars	100	64.884	Pygocentrus_nattereri
ENSCPOG00000000870	VARS	100	92.009	ENSRNOG00000000867	Vars	100	92.009	Rattus_norvegicus
ENSCPOG00000000870	VARS	100	91.772	ENSRBIG00000041669	VARS	100	91.772	Rhinopithecus_bieti
ENSCPOG00000000870	VARS	100	91.772	ENSRROG00000045490	VARS	100	91.772	Rhinopithecus_roxellana
ENSCPOG00000000870	VARS	100	91.851	ENSSBOG00000035402	VARS	100	91.851	Saimiri_boliviensis_boliviensis
ENSCPOG00000000870	VARS	100	80.518	ENSSHAG00000006937	VARS	100	80.754	Sarcophilus_harrisii
ENSCPOG00000000870	VARS	100	64.402	ENSSFOG00015014272	vars	100	64.484	Scleropages_formosus
ENSCPOG00000000870	VARS	100	62.771	ENSSMAG00000009596	vars	99	63.284	Scophthalmus_maximus
ENSCPOG00000000870	VARS	100	63.854	ENSSDUG00000014177	vars	100	64.136	Seriola_dumerili
ENSCPOG00000000870	VARS	100	63.700	ENSSLDG00000025316	vars	100	63.981	Seriola_lalandi_dorsalis
ENSCPOG00000000870	VARS	100	63.947	ENSSPAG00000017068	vars	100	64.386	Stegastes_partitus
ENSCPOG00000000870	VARS	100	90.514	ENSSSCG00000038950	VARS	100	91.067	Sus_scrofa
ENSCPOG00000000870	VARS	82	63.934	ENSTRUG00000012307	vars	97	63.977	Takifugu_rubripes
ENSCPOG00000000870	VARS	100	64.476	ENSTNIG00000008011	vars	100	64.839	Tetraodon_nigroviridis
ENSCPOG00000000870	VARS	54	95.880	ENSTBEG00000004728	-	60	95.880	Tupaia_belangeri
ENSCPOG00000000870	VARS	95	92.206	ENSTTRG00000014128	VARS	93	92.206	Tursiops_truncatus
ENSCPOG00000000870	VARS	100	88.129	ENSUAMG00000010424	VARS	100	88.129	Ursus_americanus
ENSCPOG00000000870	VARS	93	90.952	ENSUMAG00000013486	VARS	98	91.111	Ursus_maritimus
ENSCPOG00000000870	VARS	100	90.672	ENSVVUG00000021323	VARS	100	90.751	Vulpes_vulpes
ENSCPOG00000000870	VARS	96	62.813	ENSXETG00000024076	vars	98	62.783	Xenopus_tropicalis
ENSCPOG00000000870	VARS	100	64.882	ENSXCOG00000019172	vars	100	65.173	Xiphophorus_couchianus
ENSCPOG00000000870	VARS	100	64.669	ENSXMAG00000010927	vars	100	64.957	Xiphophorus_maculatus