EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCPOG00000001492 (Gene tree)
Gene ID: 100721891
Gene Symbol: SETX
Alias: ALS4|AOA2|KIAA0625|SCAR1|Sen1
Full Name: senataxin
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Plus strand
Length: 65102 bases
Position: chrDS562882.1:1360449-1425550
Accession: 100721891
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000001348	SEN1_N	PF12726.7	8.5e-12	1	1
ENSCPOP00000016982	SEN1_N	PF12726.7	8.5e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000001512	SETX-201	11038	-	ENSCPOP00000001348	2661 (aa)	-	H0UWB8
ENSCPOT00000039274	SETX-203	6050	-	ENSCPOP00000031598	81 (aa)	-	A0A286Y1M4
ENSCPOT00000021554	SETX-202	10483	XM_003470825	ENSCPOP00000016982	2661 (aa)	XP_003470873	H0UWB8

Gene Model

Click here to download ENSCPOG00000001492's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000001492's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000001492	SETX	100	71.561	ENSG00000107290	SETX	100	78.714	Homo_sapiens
ENSCPOG00000001492	SETX	79	42.472	ENSAMXG00000014406	-	85	42.472	Astyanax_mexicanus
ENSCPOG00000001492	SETX	100	71.354	ENSCJAG00000018245	SETX	100	71.391	Callithrix_jacchus
ENSCPOG00000001492	SETX	97	80.246	ENSCLAG00000012582	SETX	99	80.246	Chinchilla_lanigera
ENSCPOG00000001492	SETX	72	89.552	ENSETEG00000008111	-	72	89.552	Echinops_telfairi
ENSCPOG00000001492	SETX	91	74.519	ENSECAG00000012019	SETX	99	74.765	Equus_caballus
ENSCPOG00000001492	SETX	75	43.478	ENSELUG00000022536	-	76	42.338	Esox_lucius
ENSCPOG00000001492	SETX	100	71.678	ENSFCAG00000007102	SETX	100	71.307	Felis_catus
ENSCPOG00000001492	SETX	78	72.213	ENSFALG00000001464	SETX	86	72.213	Ficedula_albicollis
ENSCPOG00000001492	SETX	100	70.149	ENSGGOG00000027664	SETX	94	81.807	Gorilla_gorilla
ENSCPOG00000001492	SETX	52	44.670	ENSIPUG00000006685	setx	78	43.720	Ictalurus_punctatus
ENSCPOG00000001492	SETX	83	53.365	ENSLOCG00000004264	SETX	90	53.686	Lepisosteus_oculatus
ENSCPOG00000001492	SETX	99	64.374	ENSMOCG00000000848	Setx	99	65.088	Microtus_ochrogaster
ENSCPOG00000001492	SETX	99	67.941	MGP_PahariEiJ_G0024821	Setx	100	68.089	Mus_pahari
ENSCPOG00000001492	SETX	100	69.915	ENSNLEG00000012839	SETX	99	71.509	Nomascus_leucogenys
ENSCPOG00000001492	SETX	95	67.113	ENSOCUG00000005616	SETX	96	67.091	Oryctolagus_cuniculus
ENSCPOG00000001492	SETX	99	70.977	ENSOGAG00000013387	SETX	99	70.904	Otolemur_garnettii
ENSCPOG00000001492	SETX	100	71.227	ENSPPAG00000004108	SETX	94	81.179	Pan_paniscus
ENSCPOG00000001492	SETX	100	71.874	ENSPPRG00000012867	SETX	100	71.503	Panthera_pardus
ENSCPOG00000001492	SETX	100	71.466	ENSPTIG00000021101	SETX	100	71.466	Panthera_tigris_altaica
ENSCPOG00000001492	SETX	100	71.216	ENSPTRG00000021495	SETX	94	81.179	Pan_troglodytes
ENSCPOG00000001492	SETX	77	47.833	ENSPKIG00000025162	SETX	83	47.833	Paramormyrops_kingsleyae
ENSCPOG00000001492	SETX	54	93.103	ENSSARG00000002336	-	61	93.103	Sorex_araneus
ENSCPOG00000001492	SETX	83	73.244	ENSSPUG00000016332	SETX	83	73.244	Sphenodon_punctatus
ENSCPOG00000001492	SETX	99	69.388	ENSSSCG00000005724	SETX	99	69.425	Sus_scrofa
ENSCPOG00000001492	SETX	79	72.093	ENSTGUG00000005117	SETX	86	72.093	Taeniopygia_guttata
ENSCPOG00000001492	SETX	79	63.861	ENSXETG00000006254	setx	88	63.861	Xenopus_tropicalis