EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPOG00000001500 (Gene tree)
Gene ID: 100720156
Gene Symbol: -
Alias: -
Full Name: SRA stem-loop interacting RNA binding protein
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Plus strand
Length: 5324 bases
Position: chrDS562875.1:21479157-21484480
Accession: 100720156
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000001356	RRM_1	PF00076.22	7.7e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000001520	-	742	XM_003472455	ENSCPOP00000001356	111 (aa)	XP_003472503	H0UWC6

Gene Model

Click here to download ENSCPOG00000001500's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000001500's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPOG00000001500	-	78	34.211	ENSCPOG00000020185	DAZAP1	85	33.846
ENSCPOG00000001500	-	68	31.579	ENSCPOG00000025972	HNRNPAB	50	31.579

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000001500	-	90	81.000	ENSBTAG00000008135	SLIRP	100	81.081	Bos_taurus
ENSCPOG00000001500	-	91	71.287	ENSBTAG00000050457	-	99	71.287	Bos_taurus
ENSCPOG00000001500	-	90	77.000	ENSCAFG00000017230	SLIRP	100	77.477	Canis_familiaris
ENSCPOG00000001500	-	90	77.000	ENSCAFG00020000852	-	100	77.477	Canis_lupus_dingo
ENSCPOG00000001500	-	100	79.279	ENSCHIG00000019077	-	100	79.279	Capra_hircus
ENSCPOG00000001500	-	100	73.874	ENSCHIG00000002964	-	100	73.874	Capra_hircus
ENSCPOG00000001500	-	100	83.784	ENSCLAG00000008545	-	100	83.784	Chinchilla_lanigera
ENSCPOG00000001500	-	80	64.045	ENSDNOG00000041397	-	81	64.045	Dasypus_novemcinctus
ENSCPOG00000001500	-	100	81.982	ENSECAG00000000712	SLIRP	100	81.982	Equus_caballus
ENSCPOG00000001500	-	89	78.788	ENSJJAG00000018723	-	100	75.676	Jaculus_jaculus
ENSCPOG00000001500	-	100	71.171	MGP_PahariEiJ_G0029754	-	100	71.171	Mus_pahari
ENSCPOG00000001500	-	90	75.000	ENSMLUG00000022403	-	100	73.874	Myotis_lucifugus
ENSCPOG00000001500	-	100	73.874	ENSOPRG00000007560	-	100	73.874	Ochotona_princeps
ENSCPOG00000001500	-	100	80.180	ENSOCUG00000009713	-	100	80.180	Oryctolagus_cuniculus
ENSCPOG00000001500	-	90	69.000	ENSOGAG00000027580	-	99	68.468	Otolemur_garnettii
ENSCPOG00000001500	-	100	64.865	ENSOARG00000016139	-	100	64.865	Ovis_aries
ENSCPOG00000001500	-	90	80.000	ENSOARG00000002642	SLIRP	100	80.180	Ovis_aries
ENSCPOG00000001500	-	86	59.375	ENSPCAG00000004290	-	100	58.559	Procavia_capensis
ENSCPOG00000001500	-	70	73.077	ENSPVAG00000006420	-	70	73.077	Pteropus_vampyrus
ENSCPOG00000001500	-	100	72.973	ENSRNOG00000012314	Slirp	100	72.973	Rattus_norvegicus
ENSCPOG00000001500	-	100	75.676	ENSTBEG00000013979	-	100	75.676	Tupaia_belangeri
ENSCPOG00000001500	-	70	78.205	ENSTTRG00000009328	-	100	64.865	Tursiops_truncatus