EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCPOG00000001671 (Gene tree)
Gene ID: 100724675
Gene Symbol: MBD1
Alias: CXXC3|PCM1
Full Name: methyl-CpG binding domain protein 1
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Plus strand
Length: 18553 bases
Position: chrDS562869.1:15240219-15258771
Accession: 100724675
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000001507	MBD	PF01429.19	1.1e-15	1	1
ENSCPOP00000027978	MBD	PF01429.19	1.2e-15	1	1
ENSCPOP00000026216	MBD	PF01429.19	1.3e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000038585	MBD1-202	5098	XM_013157157	ENSCPOP00000026216	659 (aa)	XP_013012611	A0A286XLD5
ENSCPOT00000001692	MBD1-203	4040	XM_013157159	ENSCPOP00000001507	599 (aa)	XP_013012613	H0UWR2
ENSCPOT00000045859	MBD1-201	5170	-	ENSCPOP00000027978	648 (aa)	-	A0A286XR60

Gene Model

Click here to download ENSCPOG00000001671's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000001671's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000001671	MBD1	100	73.957	ENSG00000141644	MBD1	82	97.222	Homo_sapiens
ENSCPOG00000001671	MBD1	67	32.028	ENSAPOG00000012810	mbd1b	50	32.110	Acanthochromis_polyacanthus
ENSCPOG00000001671	MBD1	97	71.893	ENSAMEG00000000238	MBD1	97	67.889	Ailuropoda_melanoleuca
ENSCPOG00000001671	MBD1	67	30.734	ENSAOCG00000020272	mbd1b	51	32.420	Amphiprion_ocellaris
ENSCPOG00000001671	MBD1	67	30.734	ENSAPEG00000023230	mbd1b	51	32.420	Amphiprion_percula
ENSCPOG00000001671	MBD1	67	32.319	ENSATEG00000009608	mbd1b	50	32.009	Anabas_testudineus
ENSCPOG00000001671	MBD1	63	34.694	ENSACAG00000006091	-	100	34.312	Anolis_carolinensis
ENSCPOG00000001671	MBD1	99	72.927	ENSANAG00000036253	MBD1	100	74.125	Aotus_nancymaae
ENSCPOG00000001671	MBD1	100	69.518	ENSBTAG00000003801	MBD1	100	72.317	Bos_taurus
ENSCPOG00000001671	MBD1	100	73.623	ENSCJAG00000004959	MBD1	100	74.624	Callithrix_jacchus
ENSCPOG00000001671	MBD1	99	70.614	ENSCAFG00000018928	MBD1	98	67.391	Canis_familiaris
ENSCPOG00000001671	MBD1	96	71.723	ENSCAFG00020024272	MBD1	100	68.467	Canis_lupus_dingo
ENSCPOG00000001671	MBD1	100	69.829	ENSCHIG00000021134	MBD1	100	72.162	Capra_hircus
ENSCPOG00000001671	MBD1	98	71.210	ENSTSYG00000000509	MBD1	100	67.756	Carlito_syrichta
ENSCPOG00000001671	MBD1	96	71.053	ENSCAPG00000015782	MBD1	100	70.898	Cavia_aperea
ENSCPOG00000001671	MBD1	100	72.118	ENSCCAG00000034600	MBD1	100	58.457	Cebus_capucinus
ENSCPOG00000001671	MBD1	100	73.957	ENSCATG00000029959	MBD1	100	74.124	Cercocebus_atys
ENSCPOG00000001671	MBD1	98	90.557	ENSCLAG00000007457	MBD1	86	90.557	Chinchilla_lanigera
ENSCPOG00000001671	MBD1	100	72.897	ENSCSAG00000018070	MBD1	100	68.827	Chlorocebus_sabaeus
ENSCPOG00000001671	MBD1	100	73.623	ENSCANG00000033425	MBD1	100	73.790	Colobus_angolensis_palliatus
ENSCPOG00000001671	MBD1	100	65.480	ENSCGRG00001014843	Mbd1	100	67.485	Cricetulus_griseus_chok1gshd
ENSCPOG00000001671	MBD1	99	56.840	ENSCGRG00000014135	Mbd1	100	58.464	Cricetulus_griseus_crigri
ENSCPOG00000001671	MBD1	96	67.747	ENSDNOG00000015998	MBD1	100	69.072	Dasypus_novemcinctus
ENSCPOG00000001671	MBD1	99	57.638	ENSDORG00000013917	Mbd1	100	54.094	Dipodomys_ordii
ENSCPOG00000001671	MBD1	100	71.381	ENSEASG00005003857	MBD1	100	73.378	Equus_asinus_asinus
ENSCPOG00000001671	MBD1	100	71.118	ENSECAG00000011497	MBD1	81	73.313	Equus_caballus
ENSCPOG00000001671	MBD1	65	31.850	ENSELUG00000004375	mbd1b	50	31.767	Esox_lucius
ENSCPOG00000001671	MBD1	100	71.048	ENSFCAG00000015730	MBD1	100	72.546	Felis_catus
ENSCPOG00000001671	MBD1	90	90.868	ENSFDAG00000011085	MBD1	97	69.552	Fukomys_damarensis
ENSCPOG00000001671	MBD1	52	51.685	ENSFHEG00000020120	mbd1b	50	31.409	Fundulus_heteroclitus
ENSCPOG00000001671	MBD1	67	32.941	ENSGAFG00000008975	mbd1b	51	32.464	Gambusia_affinis
ENSCPOG00000001671	MBD1	62	30.402	ENSGACG00000012106	-	58	30.024	Gasterosteus_aculeatus
ENSCPOG00000001671	MBD1	100	72.741	ENSGGOG00000016966	MBD1	96	73.266	Gorilla_gorilla
ENSCPOG00000001671	MBD1	100	80.374	ENSHGLG00000008740	MBD1	100	81.709	Heterocephalus_glaber_female
ENSCPOG00000001671	MBD1	89	77.308	ENSHGLG00100005198	MBD1	100	77.821	Heterocephalus_glaber_male
ENSCPOG00000001671	MBD1	67	32.941	ENSHCOG00000009952	mbd1b	51	33.333	Hippocampus_comes
ENSCPOG00000001671	MBD1	61	31.931	ENSIPUG00000015243	-	50	30.923	Ictalurus_punctatus
ENSCPOG00000001671	MBD1	100	74.458	ENSSTOG00000007780	MBD1	100	75.951	Ictidomys_tridecemlineatus
ENSCPOG00000001671	MBD1	96	59.970	ENSJJAG00000022859	Mbd1	100	59.758	Jaculus_jaculus
ENSCPOG00000001671	MBD1	64	30.657	ENSKMAG00000020760	mbd1b	58	30.526	Kryptolebias_marmoratus
ENSCPOG00000001671	MBD1	50	64.062	ENSLACG00000002414	-	58	32.723	Latimeria_chalumnae
ENSCPOG00000001671	MBD1	99	61.875	ENSLAFG00000031328	MBD1	100	64.350	Loxodonta_africana
ENSCPOG00000001671	MBD1	100	73.957	ENSMFAG00000026335	MBD1	100	74.124	Macaca_fascicularis
ENSCPOG00000001671	MBD1	99	73.266	ENSMMUG00000009050	MBD1	96	73.435	Macaca_mulatta
ENSCPOG00000001671	MBD1	100	73.957	ENSMNEG00000038822	MBD1	100	74.124	Macaca_nemestrina
ENSCPOG00000001671	MBD1	100	73.957	ENSMLEG00000043121	MBD1	100	74.124	Mandrillus_leucophaeus
ENSCPOG00000001671	MBD1	71	31.222	ENSMAMG00000023341	-	65	31.126	Mastacembelus_armatus
ENSCPOG00000001671	MBD1	91	83.556	ENSMICG00000006414	MBD1	100	83.556	Microcebus_murinus
ENSCPOG00000001671	MBD1	64	38.250	ENSMODG00000001286	-	58	37.558	Monodelphis_domestica
ENSCPOG00000001671	MBD1	67	32.243	ENSMALG00000007808	mbd1b	50	31.787	Monopterus_albus
ENSCPOG00000001671	MBD1	99	59.346	ENSMUSG00000024561	Mbd1	100	61.890	Mus_musculus
ENSCPOG00000001671	MBD1	100	59.443	MGP_PahariEiJ_G0019128	Mbd1	100	60.836	Mus_pahari
ENSCPOG00000001671	MBD1	98	59.906	MGP_SPRETEiJ_G0023304	Mbd1	99	61.356	Mus_spretus
ENSCPOG00000001671	MBD1	99	70.949	ENSMPUG00000008843	MBD1	98	67.294	Mustela_putorius_furo
ENSCPOG00000001671	MBD1	97	71.068	ENSMLUG00000008286	MBD1	97	66.912	Myotis_lucifugus
ENSCPOG00000001671	MBD1	98	58.906	ENSNGAG00000011412	Mbd1	100	59.607	Nannospalax_galili
ENSCPOG00000001671	MBD1	100	73.456	ENSNLEG00000011661	-	100	73.623	Nomascus_leucogenys
ENSCPOG00000001671	MBD1	98	56.550	ENSNLEG00000032711	-	88	56.314	Nomascus_leucogenys
ENSCPOG00000001671	MBD1	100	62.305	ENSOPRG00000007647	MBD1	100	58.488	Ochotona_princeps
ENSCPOG00000001671	MBD1	99	69.231	ENSODEG00000018451	MBD1	100	71.515	Octodon_degus
ENSCPOG00000001671	MBD1	63	31.605	ENSONIG00000020289	mbd1b	55	32.609	Oreochromis_niloticus
ENSCPOG00000001671	MBD1	84	38.869	ENSOANG00000014593	-	100	37.782	Ornithorhynchus_anatinus
ENSCPOG00000001671	MBD1	96	71.257	ENSOCUG00000006554	MBD1	100	68.843	Oryctolagus_cuniculus
ENSCPOG00000001671	MBD1	98	69.737	ENSOGAG00000003784	MBD1	97	66.667	Otolemur_garnettii
ENSCPOG00000001671	MBD1	97	70.728	ENSOARG00000004218	MBD1	95	67.452	Ovis_aries
ENSCPOG00000001671	MBD1	100	73.053	ENSPPAG00000038886	MBD1	100	68.981	Pan_paniscus
ENSCPOG00000001671	MBD1	100	71.215	ENSPPRG00000021387	MBD1	100	72.712	Panthera_pardus
ENSCPOG00000001671	MBD1	100	71.273	ENSPTIG00000021231	MBD1	98	71.838	Panthera_tigris_altaica
ENSCPOG00000001671	MBD1	100	73.053	ENSPTRG00000010021	MBD1	96	73.604	Pan_troglodytes
ENSCPOG00000001671	MBD1	99	73.266	ENSPANG00000010867	MBD1	96	73.435	Papio_anubis
ENSCPOG00000001671	MBD1	99	51.969	ENSPEMG00000022630	Mbd1	100	48.961	Peromyscus_maniculatus_bairdii
ENSCPOG00000001671	MBD1	96	41.352	ENSPCIG00000027937	-	79	41.325	Phascolarctos_cinereus
ENSCPOG00000001671	MBD1	51	52.308	ENSPFOG00000007511	mbd1b	51	32.701	Poecilia_formosa
ENSCPOG00000001671	MBD1	67	32.941	ENSPLAG00000021258	mbd1b	51	32.701	Poecilia_latipinna
ENSCPOG00000001671	MBD1	67	32.941	ENSPMEG00000024145	mbd1b	51	32.701	Poecilia_mexicana
ENSCPOG00000001671	MBD1	67	32.941	ENSPREG00000021805	mbd1b	51	32.701	Poecilia_reticulata
ENSCPOG00000001671	MBD1	100	72.897	ENSPPYG00000009158	MBD1	91	68.827	Pongo_abelii
ENSCPOG00000001671	MBD1	86	75.828	ENSPCAG00000001648	MBD1	86	75.828	Procavia_capensis
ENSCPOG00000001671	MBD1	91	85.778	ENSPCOG00000012450	MBD1	100	85.778	Propithecus_coquereli
ENSCPOG00000001671	MBD1	99	52.792	ENSRNOG00000024104	Mbd1	100	53.228	Rattus_norvegicus
ENSCPOG00000001671	MBD1	100	73.623	ENSRBIG00000041294	MBD1	100	73.623	Rhinopithecus_bieti
ENSCPOG00000001671	MBD1	100	72.586	ENSRROG00000032517	MBD1	96	72.927	Rhinopithecus_roxellana
ENSCPOG00000001671	MBD1	98	73.549	ENSSBOG00000027169	MBD1	92	72.205	Saimiri_boliviensis_boliviensis
ENSCPOG00000001671	MBD1	100	69.626	ENSSSCG00000004516	MBD1	100	67.559	Sus_scrofa
ENSCPOG00000001671	MBD1	63	32.134	ENSTRUG00000013422	mbd1b	50	32.867	Takifugu_rubripes
ENSCPOG00000001671	MBD1	75	80.833	ENSTBEG00000012651	-	68	81.013	Tupaia_belangeri
ENSCPOG00000001671	MBD1	100	68.012	ENSTTRG00000015523	MBD1	100	70.186	Tursiops_truncatus
ENSCPOG00000001671	MBD1	96	69.956	ENSUAMG00000004752	MBD1	100	66.472	Ursus_americanus
ENSCPOG00000001671	MBD1	100	70.807	ENSUMAG00000002947	MBD1	100	67.077	Ursus_maritimus
ENSCPOG00000001671	MBD1	67	32.941	ENSXMAG00000005628	mbd1b	51	32.701	Xiphophorus_maculatus