EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCPOG00000001780 (Gene tree)
Gene ID: 100713838
Gene Symbol: -
Alias: -
Full Name: pentatricopeptide repeat-containing protein 1%2C mitochondrial-like
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Plus strand
Length: 24229 bases
Position: chrDS562885.1:5449808-5474036
Accession: 100713838
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000001611	PPR	PF01535.20	5.6e-17	1	2
ENSCPOP00000001611	PPR	PF01535.20	5.6e-17	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000001801	-	2283	XM_005003705	ENSCPOP00000001611	705 (aa)	XP_005003762	H0UX11

Gene Model

Click here to download ENSCPOG00000001780's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000001780's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000001780	-	100	73.484	ENSG00000248919	ATP5MF-PTCD1	93	73.625	Homo_sapiens
ENSCPOG00000001780	-	100	73.484	ENSG00000106246	PTCD1	100	73.625	Homo_sapiens
ENSCPOG00000001780	-	84	46.745	ENSAPOG00000010679	ptcd1	88	46.745	Acanthochromis_polyacanthus
ENSCPOG00000001780	-	100	78.187	ENSAMEG00000006224	-	93	78.187	Ailuropoda_melanoleuca
ENSCPOG00000001780	-	89	48.276	ENSACIG00000017861	ptcd1	90	48.276	Amphilophus_citrinellus
ENSCPOG00000001780	-	85	46.546	ENSAOCG00000022617	ptcd1	88	46.546	Amphiprion_ocellaris
ENSCPOG00000001780	-	94	45.630	ENSAOCG00000020741	-	92	45.630	Amphiprion_ocellaris
ENSCPOG00000001780	-	94	46.006	ENSAPEG00000022632	ptcd1	92	46.006	Amphiprion_percula
ENSCPOG00000001780	-	87	49.349	ENSATEG00000007016	ptcd1	80	50.423	Anabas_testudineus
ENSCPOG00000001780	-	87	59.643	ENSAPLG00000006862	-	94	59.643	Anas_platyrhynchos
ENSCPOG00000001780	-	98	54.789	ENSACAG00000012871	-	92	54.789	Anolis_carolinensis
ENSCPOG00000001780	-	98	73.585	ENSANAG00000035790	-	100	73.585	Aotus_nancymaae
ENSCPOG00000001780	-	86	48.377	ENSACLG00000002824	ptcd1	80	49.241	Astatotilapia_calliptera
ENSCPOG00000001780	-	87	46.822	ENSAMXG00000037292	ptcd1	88	47.114	Astyanax_mexicanus
ENSCPOG00000001780	-	100	75.177	ENSBTAG00000020440	-	87	75.177	Bos_taurus
ENSCPOG00000001780	-	100	73.475	ENSCJAG00000015815	-	100	73.475	Callithrix_jacchus
ENSCPOG00000001780	-	100	76.977	ENSCAFG00000015055	-	93	76.977	Canis_familiaris
ENSCPOG00000001780	-	100	76.977	ENSCAFG00020014480	-	93	76.977	Canis_lupus_dingo
ENSCPOG00000001780	-	100	75.177	ENSCHIG00000027000	-	99	75.177	Capra_hircus
ENSCPOG00000001780	-	100	76.629	ENSTSYG00000029495	-	100	76.629	Carlito_syrichta
ENSCPOG00000001780	-	93	98.480	ENSCAPG00000014660	-	100	98.480	Cavia_aperea
ENSCPOG00000001780	-	100	72.663	ENSCCAG00000034025	-	100	72.663	Cebus_capucinus
ENSCPOG00000001780	-	99	73.609	ENSCATG00000040859	-	99	73.894	Cercocebus_atys
ENSCPOG00000001780	-	98	89.049	ENSCLAG00000006354	-	100	88.369	Chinchilla_lanigera
ENSCPOG00000001780	-	91	73.148	ENSCSAG00000017794	-	99	70.968	Chlorocebus_sabaeus
ENSCPOG00000001780	-	89	58.422	ENSCPBG00000020866	-	85	60.348	Chrysemys_picta_bellii
ENSCPOG00000001780	-	83	31.148	ENSCING00000007717	-	93	31.652	Ciona_intestinalis
ENSCPOG00000001780	-	99	73.963	ENSCANG00000023441	-	99	74.249	Colobus_angolensis_palliatus
ENSCPOG00000001780	-	100	73.975	ENSCGRG00001023686	Ptcd1	100	73.975	Cricetulus_griseus_chok1gshd
ENSCPOG00000001780	-	99	74.189	ENSCGRG00000015031	Ptcd1	100	74.189	Cricetulus_griseus_crigri
ENSCPOG00000001780	-	84	46.387	ENSCSEG00000002378	ptcd1	80	46.848	Cynoglossus_semilaevis
ENSCPOG00000001780	-	85	47.533	ENSCVAG00000015826	ptcd1	83	47.533	Cyprinodon_variegatus
ENSCPOG00000001780	-	86	47.317	ENSCVAG00000003621	ptcd1	90	46.916	Cyprinodon_variegatus
ENSCPOG00000001780	-	87	49.117	ENSDARG00000076176	ptcd1	88	49.271	Danio_rerio
ENSCPOG00000001780	-	100	74.225	ENSDNOG00000009957	-	100	74.225	Dasypus_novemcinctus
ENSCPOG00000001780	-	99	76.143	ENSDORG00000000740	Ptcd1	100	76.143	Dipodomys_ordii
ENSCPOG00000001780	-	91	40.230	ENSEBUG00000014515	ptcd1	99	41.794	Eptatretus_burgeri
ENSCPOG00000001780	-	100	78.732	ENSEASG00005002480	-	100	78.732	Equus_asinus_asinus
ENSCPOG00000001780	-	100	78.873	ENSECAG00000016617	-	100	78.873	Equus_caballus
ENSCPOG00000001780	-	96	44.023	ENSELUG00000016517	ptcd1	82	47.411	Esox_lucius
ENSCPOG00000001780	-	100	78.329	ENSFCAG00000015069	-	100	78.329	Felis_catus
ENSCPOG00000001780	-	93	57.771	ENSFALG00000013803	-	92	57.949	Ficedula_albicollis
ENSCPOG00000001780	-	100	83.121	ENSFDAG00000006393	-	100	83.121	Fukomys_damarensis
ENSCPOG00000001780	-	75	48.052	ENSFHEG00000012491	ptcd1	88	48.052	Fundulus_heteroclitus
ENSCPOG00000001780	-	86	46.393	ENSGMOG00000007639	ptcd1	95	46.393	Gadus_morhua
ENSCPOG00000001780	-	87	57.387	ENSGALG00000004711	-	88	57.698	Gallus_gallus
ENSCPOG00000001780	-	84	47.500	ENSGAFG00000013175	ptcd1	82	47.571	Gambusia_affinis
ENSCPOG00000001780	-	85	48.282	ENSGACG00000016607	ptcd1	91	48.282	Gasterosteus_aculeatus
ENSCPOG00000001780	-	82	59.593	ENSGAGG00000021832	-	84	60.739	Gopherus_agassizii
ENSCPOG00000001780	-	99	74.106	ENSGGOG00000015123	-	99	74.249	Gorilla_gorilla
ENSCPOG00000001780	-	86	48.701	ENSHBUG00000018275	ptcd1	80	49.578	Haplochromis_burtoni
ENSCPOG00000001780	-	100	85.127	ENSHGLG00000017621	-	100	85.127	Heterocephalus_glaber_female
ENSCPOG00000001780	-	100	85.127	ENSHGLG00100007218	-	100	85.127	Heterocephalus_glaber_male
ENSCPOG00000001780	-	83	46.701	ENSHCOG00000010784	ptcd1	82	46.939	Hippocampus_comes
ENSCPOG00000001780	-	100	78.028	ENSSTOG00000001682	-	100	78.028	Ictidomys_tridecemlineatus
ENSCPOG00000001780	-	100	74.504	ENSJJAG00000000319	Ptcd1	100	74.504	Jaculus_jaculus
ENSCPOG00000001780	-	84	48.662	ENSKMAG00000008708	ptcd1	80	48.818	Kryptolebias_marmoratus
ENSCPOG00000001780	-	92	45.068	ENSLBEG00000008061	ptcd1	88	45.220	Labrus_bergylta
ENSCPOG00000001780	-	91	54.058	ENSLACG00000011172	ptcd1	83	57.947	Latimeria_chalumnae
ENSCPOG00000001780	-	93	52.193	ENSLOCG00000004833	ptcd1	95	53.871	Lepisosteus_oculatus
ENSCPOG00000001780	-	100	71.308	ENSLAFG00000002588	-	100	71.730	Loxodonta_africana
ENSCPOG00000001780	-	99	73.752	ENSMFAG00000041324	-	99	74.037	Macaca_fascicularis
ENSCPOG00000001780	-	99	73.609	ENSMMUG00000030408	-	99	73.894	Macaca_mulatta
ENSCPOG00000001780	-	99	73.466	ENSMNEG00000043786	-	99	73.752	Macaca_nemestrina
ENSCPOG00000001780	-	99	55.635	ENSMLEG00000031179	-	99	57.775	Mandrillus_leucophaeus
ENSCPOG00000001780	-	95	47.222	ENSMAMG00000007623	ptcd1	91	47.222	Mastacembelus_armatus
ENSCPOG00000001780	-	86	48.377	ENSMZEG00005012722	ptcd1	80	49.241	Maylandia_zebra
ENSCPOG00000001780	-	98	55.508	ENSMGAG00000004211	-	92	55.415	Meleagris_gallopavo
ENSCPOG00000001780	-	100	76.271	ENSMICG00000017428	-	100	76.271	Microcebus_murinus
ENSCPOG00000001780	-	91	46.213	ENSMMOG00000020243	ptcd1	94	46.368	Mola_mola
ENSCPOG00000001780	-	97	60.138	ENSMODG00000001350	-	98	60.000	Monodelphis_domestica
ENSCPOG00000001780	-	86	48.940	ENSMALG00000018442	ptcd1	80	49.327	Monopterus_albus
ENSCPOG00000001780	-	99	75.178	MGP_CAROLIEiJ_G0028011	Ptcd1	99	75.321	Mus_caroli
ENSCPOG00000001780	-	99	74.893	ENSMUSG00000029624	Ptcd1	99	75.036	Mus_musculus
ENSCPOG00000001780	-	99	74.893	MGP_PahariEiJ_G0024580	Ptcd1	99	75.036	Mus_pahari
ENSCPOG00000001780	-	99	75.464	MGP_SPRETEiJ_G0029012	Ptcd1	99	75.606	Mus_spretus
ENSCPOG00000001780	-	100	76.771	ENSMPUG00000016518	-	100	77.479	Mustela_putorius_furo
ENSCPOG00000001780	-	100	78.732	ENSMLUG00000010994	-	94	78.873	Myotis_lucifugus
ENSCPOG00000001780	-	87	48.320	ENSNBRG00000010079	ptcd1	89	46.779	Neolamprologus_brichardi
ENSCPOG00000001780	-	99	76.471	ENSNLEG00000011060	-	99	76.471	Nomascus_leucogenys
ENSCPOG00000001780	-	97	61.571	ENSMEUG00000006930	-	99	61.571	Notamacropus_eugenii
ENSCPOG00000001780	-	89	74.941	ENSOPRG00000013647	-	89	74.941	Ochotona_princeps
ENSCPOG00000001780	-	83	48.316	ENSONIG00000003168	ptcd1	95	48.229	Oreochromis_niloticus
ENSCPOG00000001780	-	80	56.604	ENSOANG00000007728	-	74	56.604	Ornithorhynchus_anatinus
ENSCPOG00000001780	-	99	73.609	ENSOCUG00000010584	-	97	73.609	Oryctolagus_cuniculus
ENSCPOG00000001780	-	86	48.287	ENSORLG00000009275	ptcd1	83	48.990	Oryzias_latipes
ENSCPOG00000001780	-	86	47.798	ENSORLG00020000988	ptcd1	86	47.798	Oryzias_latipes_hni
ENSCPOG00000001780	-	86	47.308	ENSORLG00015010557	ptcd1	84	47.980	Oryzias_latipes_hsok
ENSCPOG00000001780	-	83	49.066	ENSOMEG00000020627	ptcd1	85	49.231	Oryzias_melastigma
ENSCPOG00000001780	-	98	74.175	ENSOGAG00000010877	-	99	74.175	Otolemur_garnettii
ENSCPOG00000001780	-	100	70.963	ENSOARG00000018676	-	100	70.963	Ovis_aries
ENSCPOG00000001780	-	100	73.550	ENSPPAG00000036024	-	100	73.833	Pan_paniscus
ENSCPOG00000001780	-	100	78.865	ENSPPRG00000003478	-	100	78.865	Panthera_pardus
ENSCPOG00000001780	-	100	73.550	ENSPTRG00000019452	-	100	73.833	Pan_troglodytes
ENSCPOG00000001780	-	99	73.752	ENSPANG00000016730	-	99	74.037	Papio_anubis
ENSCPOG00000001780	-	93	49.256	ENSPKIG00000014215	ptcd1	97	50.595	Paramormyrops_kingsleyae
ENSCPOG00000001780	-	85	58.265	ENSPSIG00000011184	-	100	58.689	Pelodiscus_sinensis
ENSCPOG00000001780	-	73	43.810	ENSPMAG00000009667	ptcd1	100	43.810	Petromyzon_marinus
ENSCPOG00000001780	-	97	60.858	ENSPCIG00000024778	-	97	61.134	Phascolarctos_cinereus
ENSCPOG00000001780	-	85	48.419	ENSPFOG00000004458	ptcd1	83	48.419	Poecilia_formosa
ENSCPOG00000001780	-	89	46.154	ENSPLAG00000011051	ptcd1	82	48.067	Poecilia_latipinna
ENSCPOG00000001780	-	85	48.253	ENSPMEG00000020547	ptcd1	83	48.253	Poecilia_mexicana
ENSCPOG00000001780	-	88	45.498	ENSPREG00000000059	ptcd1	82	47.148	Poecilia_reticulata
ENSCPOG00000001780	-	94	74.924	ENSPPYG00000017377	-	99	74.924	Pongo_abelii
ENSCPOG00000001780	-	81	80.282	ENSPCAG00000001852	-	89	80.282	Procavia_capensis
ENSCPOG00000001780	-	100	76.912	ENSPCOG00000018596	-	100	76.912	Propithecus_coquereli
ENSCPOG00000001780	-	67	84.000	ENSPVAG00000007529	-	72	84.000	Pteropus_vampyrus
ENSCPOG00000001780	-	86	48.214	ENSPNYG00000019993	ptcd1	80	49.410	Pundamilia_nyererei
ENSCPOG00000001780	-	88	50.794	ENSPNAG00000014931	ptcd1	90	49.764	Pygocentrus_nattereri
ENSCPOG00000001780	-	99	73.752	ENSRNOG00000000987	Ptcd1	99	73.894	Rattus_norvegicus
ENSCPOG00000001780	-	99	73.963	ENSRBIG00000043393	-	99	74.249	Rhinopithecus_bieti
ENSCPOG00000001780	-	99	73.820	ENSRROG00000036420	-	99	74.106	Rhinopithecus_roxellana
ENSCPOG00000001780	-	100	73.759	ENSSBOG00000024114	-	100	73.759	Saimiri_boliviensis_boliviensis
ENSCPOG00000001780	-	98	58.435	ENSSHAG00000011376	-	99	63.070	Sarcophilus_harrisii
ENSCPOG00000001780	-	88	54.304	ENSSFOG00015007909	ptcd1	85	54.348	Scleropages_formosus
ENSCPOG00000001780	-	87	45.920	ENSSMAG00000000218	ptcd1	94	46.216	Scophthalmus_maximus
ENSCPOG00000001780	-	97	45.166	ENSSDUG00000015671	ptcd1	96	46.381	Seriola_dumerili
ENSCPOG00000001780	-	95	45.468	ENSSLDG00000014261	ptcd1	95	45.322	Seriola_lalandi_dorsalis
ENSCPOG00000001780	-	94	55.378	ENSSPUG00000003540	-	92	55.539	Sphenodon_punctatus
ENSCPOG00000001780	-	88	47.930	ENSSPAG00000011049	ptcd1	84	47.930	Stegastes_partitus
ENSCPOG00000001780	-	92	77.761	ENSSSCG00000007622	-	99	77.074	Sus_scrofa
ENSCPOG00000001780	-	87	60.393	ENSTGUG00000007563	-	98	61.258	Taeniopygia_guttata
ENSCPOG00000001780	-	86	46.972	ENSTRUG00000013471	ptcd1	82	46.972	Takifugu_rubripes
ENSCPOG00000001780	-	84	49.003	ENSTNIG00000008271	ptcd1	83	49.577	Tetraodon_nigroviridis
ENSCPOG00000001780	-	100	74.189	ENSTBEG00000011021	-	100	74.189	Tupaia_belangeri
ENSCPOG00000001780	-	100	74.894	ENSTTRG00000003006	-	100	74.894	Tursiops_truncatus
ENSCPOG00000001780	-	100	78.187	ENSUAMG00000008049	-	100	78.187	Ursus_americanus
ENSCPOG00000001780	-	99	77.021	ENSVVUG00000008836	-	100	77.021	Vulpes_vulpes
ENSCPOG00000001780	-	84	55.241	ENSXETG00000009891	ptcd1	88	54.045	Xenopus_tropicalis
ENSCPOG00000001780	-	89	45.683	ENSXMAG00000015540	ptcd1	82	47.315	Xiphophorus_maculatus