EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCPOG00000001783 (Gene tree)
Gene ID: 100722077
Gene Symbol: CPSF4
Alias: CPSF30|NAR
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Minus strand
Length: 15684 bases
Position: chrDS562885.1:5434113-5449796
Accession: 100722077
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000029099	zf-CCCH	PF00642.24	1.5e-20	1	2
ENSCPOP00000029099	zf-CCCH	PF00642.24	1.5e-20	2	2
ENSCPOP00000001614	zf-CCCH	PF00642.24	1.2e-15	1	2
ENSCPOP00000001614	zf-CCCH	PF00642.24	1.2e-15	2	2
ENSCPOP00000001614	zf-CCHC	PF00098.23	2.7e-06	1	1
ENSCPOP00000029099	zf-CCHC	PF00098.23	3.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000032069	CPSF4-201	1846	XM_003470017	ENSCPOP00000029099	244 (aa)	XP_003470065	A0A286XUE3
ENSCPOT00000001804	CPSF4-202	636	-	ENSCPOP00000001614	211 (aa)	-	H0UX14

Gene Model

Click here to download ENSCPOG00000001783's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000001783's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000001783	CPSF4	100	99.180	ENSG00000160917	CPSF4	100	100.000	Homo_sapiens
ENSCPOG00000001783	CPSF4	64	68.927	ENSAPOG00000004921	cpsf4	100	68.927	Acanthochromis_polyacanthus
ENSCPOG00000001783	CPSF4	100	90.706	ENSAMEG00000006252	CPSF4	100	90.706	Ailuropoda_melanoleuca
ENSCPOG00000001783	CPSF4	100	87.295	ENSACIG00000009248	cpsf4	100	87.295	Amphilophus_citrinellus
ENSCPOG00000001783	CPSF4	100	81.509	ENSAOCG00000019616	cpsf4	100	81.509	Amphiprion_ocellaris
ENSCPOG00000001783	CPSF4	100	81.509	ENSAPEG00000011679	cpsf4	100	81.509	Amphiprion_percula
ENSCPOG00000001783	CPSF4	100	85.200	ENSATEG00000007010	cpsf4	100	85.425	Anabas_testudineus
ENSCPOG00000001783	CPSF4	100	83.271	ENSACAG00000012941	CPSF4	89	82.900	Anolis_carolinensis
ENSCPOG00000001783	CPSF4	100	99.052	ENSANAG00000021360	CPSF4	100	99.052	Aotus_nancymaae
ENSCPOG00000001783	CPSF4	100	80.738	ENSACLG00000010374	cpsf4	100	80.738	Astatotilapia_calliptera
ENSCPOG00000001783	CPSF4	100	85.782	ENSAMXG00000031647	cpsf4	100	86.256	Astyanax_mexicanus
ENSCPOG00000001783	CPSF4	100	98.770	ENSBTAG00000002090	CPSF4	100	98.770	Bos_taurus
ENSCPOG00000001783	CPSF4	100	99.052	ENSCJAG00000015826	CPSF4	100	99.052	Callithrix_jacchus
ENSCPOG00000001783	CPSF4	100	99.057	ENSCAFG00000015036	CPSF4	100	99.057	Canis_familiaris
ENSCPOG00000001783	CPSF4	100	91.469	ENSCAFG00020014462	CPSF4	100	91.469	Canis_lupus_dingo
ENSCPOG00000001783	CPSF4	100	99.052	ENSCHIG00000014313	CPSF4	100	99.052	Capra_hircus
ENSCPOG00000001783	CPSF4	88	92.593	ENSTSYG00000008195	-	99	92.000	Carlito_syrichta
ENSCPOG00000001783	CPSF4	100	90.612	ENSTSYG00000014604	-	100	90.612	Carlito_syrichta
ENSCPOG00000001783	CPSF4	100	99.180	ENSTSYG00000005712	-	100	99.180	Carlito_syrichta
ENSCPOG00000001783	CPSF4	76	100.000	ENSCAPG00000013881	CPSF4	82	100.000	Cavia_aperea
ENSCPOG00000001783	CPSF4	100	99.052	ENSCCAG00000028291	CPSF4	100	99.052	Cebus_capucinus
ENSCPOG00000001783	CPSF4	100	99.052	ENSCATG00000038440	CPSF4	100	99.052	Cercocebus_atys
ENSCPOG00000001783	CPSF4	100	99.526	ENSCLAG00000007050	CPSF4	100	99.526	Chinchilla_lanigera
ENSCPOG00000001783	CPSF4	100	89.963	ENSCSAG00000017795	CPSF4	100	89.963	Chlorocebus_sabaeus
ENSCPOG00000001783	CPSF4	68	80.723	ENSCPBG00000010269	-	100	80.723	Chrysemys_picta_bellii
ENSCPOG00000001783	CPSF4	78	81.944	ENSCPBG00000020869	CPSF4	100	81.481	Chrysemys_picta_bellii
ENSCPOG00000001783	CPSF4	96	56.299	ENSCING00000021080	-	97	56.299	Ciona_intestinalis
ENSCPOG00000001783	CPSF4	96	52.650	ENSCSAVG00000011469	-	97	42.349	Ciona_savignyi
ENSCPOG00000001783	CPSF4	100	99.052	ENSCANG00000019384	CPSF4	100	99.052	Colobus_angolensis_palliatus
ENSCPOG00000001783	CPSF4	100	100.000	ENSCGRG00001024184	Cpsf4	100	100.000	Cricetulus_griseus_chok1gshd
ENSCPOG00000001783	CPSF4	100	100.000	ENSCGRG00000013892	Cpsf4	100	100.000	Cricetulus_griseus_crigri
ENSCPOG00000001783	CPSF4	100	84.834	ENSCSEG00000019055	cpsf4	100	84.834	Cynoglossus_semilaevis
ENSCPOG00000001783	CPSF4	100	80.377	ENSCVAG00000016528	cpsf4	100	80.377	Cyprinodon_variegatus
ENSCPOG00000001783	CPSF4	100	79.336	ENSDARG00000020217	cpsf4	100	79.705	Danio_rerio
ENSCPOG00000001783	CPSF4	100	90.335	ENSDNOG00000006344	CPSF4	100	90.335	Dasypus_novemcinctus
ENSCPOG00000001783	CPSF4	79	88.018	ENSDORG00000000742	Cpsf4	100	88.018	Dipodomys_ordii
ENSCPOG00000001783	CPSF4	100	51.505	FBgn0015621	Clp	99	53.082	Drosophila_melanogaster
ENSCPOG00000001783	CPSF4	77	100.000	ENSETEG00000002608	CPSF4	70	100.000	Echinops_telfairi
ENSCPOG00000001783	CPSF4	99	71.774	ENSEBUG00000012552	cpsf4	98	70.161	Eptatretus_burgeri
ENSCPOG00000001783	CPSF4	100	100.000	ENSEASG00005002487	CPSF4	100	100.000	Equus_asinus_asinus
ENSCPOG00000001783	CPSF4	100	100.000	ENSECAG00000007525	CPSF4	100	100.000	Equus_caballus
ENSCPOG00000001783	CPSF4	68	100.000	ENSEEUG00000002158	CPSF4	73	100.000	Erinaceus_europaeus
ENSCPOG00000001783	CPSF4	100	79.412	ENSELUG00000011481	cpsf4	100	79.412	Esox_lucius
ENSCPOG00000001783	CPSF4	100	100.000	ENSFCAG00000015070	CPSF4	100	100.000	Felis_catus
ENSCPOG00000001783	CPSF4	68	56.977	ENSFALG00000012906	-	100	56.977	Ficedula_albicollis
ENSCPOG00000001783	CPSF4	100	94.672	ENSFALG00000013799	CPSF4	100	94.672	Ficedula_albicollis
ENSCPOG00000001783	CPSF4	88	98.919	ENSFDAG00000014092	CPSF4	100	98.919	Fukomys_damarensis
ENSCPOG00000001783	CPSF4	100	80.377	ENSFHEG00000010880	cpsf4	100	80.377	Fundulus_heteroclitus
ENSCPOG00000001783	CPSF4	100	80.233	ENSGMOG00000002330	cpsf4	100	80.233	Gadus_morhua
ENSCPOG00000001783	CPSF4	99	33.043	ENSGALG00000004441	-	98	37.640	Gallus_gallus
ENSCPOG00000001783	CPSF4	100	94.672	ENSGALG00000004714	CPSF4	100	94.672	Gallus_gallus
ENSCPOG00000001783	CPSF4	100	80.303	ENSGAFG00000010580	cpsf4	100	80.303	Gambusia_affinis
ENSCPOG00000001783	CPSF4	100	82.283	ENSGACG00000007792	cpsf4	100	82.283	Gasterosteus_aculeatus
ENSCPOG00000001783	CPSF4	75	76.923	ENSGAGG00000020579	-	92	81.212	Gopherus_agassizii
ENSCPOG00000001783	CPSF4	100	84.758	ENSGAGG00000021835	CPSF4	100	84.387	Gopherus_agassizii
ENSCPOG00000001783	CPSF4	100	99.052	ENSGGOG00000015131	CPSF4	100	99.052	Gorilla_gorilla
ENSCPOG00000001783	CPSF4	100	80.000	ENSHBUG00000013699	cpsf4	100	80.000	Haplochromis_burtoni
ENSCPOG00000001783	CPSF4	100	99.526	ENSHGLG00000017150	CPSF4	100	99.526	Heterocephalus_glaber_female
ENSCPOG00000001783	CPSF4	100	71.090	ENSHGLG00100017302	-	100	68.720	Heterocephalus_glaber_male
ENSCPOG00000001783	CPSF4	83	97.159	ENSHGLG00100009215	-	100	97.159	Heterocephalus_glaber_male
ENSCPOG00000001783	CPSF4	100	79.623	ENSHCOG00000004397	cpsf4	100	79.623	Hippocampus_comes
ENSCPOG00000001783	CPSF4	100	78.229	ENSIPUG00000017147	cpsf4	100	80.074	Ictalurus_punctatus
ENSCPOG00000001783	CPSF4	100	100.000	ENSSTOG00000001688	CPSF4	100	100.000	Ictidomys_tridecemlineatus
ENSCPOG00000001783	CPSF4	100	99.526	ENSJJAG00000019426	Cpsf4	100	99.526	Jaculus_jaculus
ENSCPOG00000001783	CPSF4	100	78.491	ENSKMAG00000015642	cpsf4	100	78.491	Kryptolebias_marmoratus
ENSCPOG00000001783	CPSF4	100	65.854	ENSLACG00000018470	-	100	64.082	Latimeria_chalumnae
ENSCPOG00000001783	CPSF4	100	82.963	ENSLACG00000010938	CPSF4	100	82.963	Latimeria_chalumnae
ENSCPOG00000001783	CPSF4	100	81.784	ENSLOCG00000004814	cpsf4	100	84.387	Lepisosteus_oculatus
ENSCPOG00000001783	CPSF4	100	90.335	ENSLAFG00000000159	CPSF4	100	98.758	Loxodonta_africana
ENSCPOG00000001783	CPSF4	100	99.052	ENSMFAG00000001462	CPSF4	100	99.052	Macaca_fascicularis
ENSCPOG00000001783	CPSF4	100	99.052	ENSMMUG00000019191	CPSF4	100	99.052	Macaca_mulatta
ENSCPOG00000001783	CPSF4	100	99.052	ENSMNEG00000032306	CPSF4	100	99.052	Macaca_nemestrina
ENSCPOG00000001783	CPSF4	100	99.052	ENSMLEG00000034721	CPSF4	100	99.052	Mandrillus_leucophaeus
ENSCPOG00000001783	CPSF4	100	80.827	ENSMAMG00000006244	cpsf4	100	80.827	Mastacembelus_armatus
ENSCPOG00000001783	CPSF4	100	80.000	ENSMZEG00005007515	cpsf4	100	80.000	Maylandia_zebra
ENSCPOG00000001783	CPSF4	86	94.286	ENSMGAG00000004235	CPSF4	100	94.286	Meleagris_gallopavo
ENSCPOG00000001783	CPSF4	100	100.000	ENSMAUG00000021253	Cpsf4	100	100.000	Mesocricetus_auratus
ENSCPOG00000001783	CPSF4	100	99.052	ENSMICG00000017429	CPSF4	100	99.052	Microcebus_murinus
ENSCPOG00000001783	CPSF4	100	100.000	ENSMOCG00000014901	Cpsf4	100	100.000	Microtus_ochrogaster
ENSCPOG00000001783	CPSF4	100	84.834	ENSMMOG00000001813	cpsf4	100	84.834	Mola_mola
ENSCPOG00000001783	CPSF4	100	88.104	ENSMODG00000001367	CPSF4	100	88.104	Monodelphis_domestica
ENSCPOG00000001783	CPSF4	100	82.022	ENSMALG00000012611	cpsf4	100	81.273	Monopterus_albus
ENSCPOG00000001783	CPSF4	100	100.000	MGP_CAROLIEiJ_G0028012	Cpsf4	100	100.000	Mus_caroli
ENSCPOG00000001783	CPSF4	100	100.000	ENSMUSG00000029625	Cpsf4	100	100.000	Mus_musculus
ENSCPOG00000001783	CPSF4	100	100.000	MGP_PahariEiJ_G0024581	Cpsf4	100	100.000	Mus_pahari
ENSCPOG00000001783	CPSF4	100	99.590	MGP_SPRETEiJ_G0029013	Cpsf4	100	99.590	Mus_spretus
ENSCPOG00000001783	CPSF4	100	90.706	ENSMPUG00000016508	CPSF4	100	90.706	Mustela_putorius_furo
ENSCPOG00000001783	CPSF4	86	98.571	ENSMLUG00000010980	CPSF4	100	98.571	Myotis_lucifugus
ENSCPOG00000001783	CPSF4	100	99.526	ENSNGAG00000001567	Cpsf4	100	99.526	Nannospalax_galili
ENSCPOG00000001783	CPSF4	90	79.253	ENSNBRG00000003943	cpsf4	98	79.253	Neolamprologus_brichardi
ENSCPOG00000001783	CPSF4	100	99.180	ENSNLEG00000011074	CPSF4	100	99.180	Nomascus_leucogenys
ENSCPOG00000001783	CPSF4	100	88.104	ENSMEUG00000006955	CPSF4	100	88.104	Notamacropus_eugenii
ENSCPOG00000001783	CPSF4	100	89.963	ENSOPRG00000013663	CPSF4	100	89.963	Ochotona_princeps
ENSCPOG00000001783	CPSF4	98	84.583	ENSODEG00000018283	-	91	84.583	Octodon_degus
ENSCPOG00000001783	CPSF4	100	100.000	ENSODEG00000011181	-	100	100.000	Octodon_degus
ENSCPOG00000001783	CPSF4	100	73.563	ENSODEG00000009779	-	100	73.563	Octodon_degus
ENSCPOG00000001783	CPSF4	100	80.000	ENSONIG00000008495	cpsf4	100	80.000	Oreochromis_niloticus
ENSCPOG00000001783	CPSF4	86	85.897	ENSOANG00000007729	CPSF4	100	85.897	Ornithorhynchus_anatinus
ENSCPOG00000001783	CPSF4	100	54.317	ENSOANG00000009568	-	100	52.878	Ornithorhynchus_anatinus
ENSCPOG00000001783	CPSF4	100	89.963	ENSOCUG00000002437	CPSF4	70	89.963	Oryctolagus_cuniculus
ENSCPOG00000001783	CPSF4	100	80.377	ENSORLG00000022798	cpsf4	100	80.377	Oryzias_latipes
ENSCPOG00000001783	CPSF4	100	80.377	ENSORLG00020008548	cpsf4	100	80.377	Oryzias_latipes_hni
ENSCPOG00000001783	CPSF4	100	80.000	ENSORLG00015019575	cpsf4	100	80.000	Oryzias_latipes_hsok
ENSCPOG00000001783	CPSF4	100	83.886	ENSOMEG00000005176	cpsf4	100	83.886	Oryzias_melastigma
ENSCPOG00000001783	CPSF4	100	90.335	ENSOGAG00000010884	CPSF4	100	90.335	Otolemur_garnettii
ENSCPOG00000001783	CPSF4	100	78.388	ENSOARG00000018668	CPSF4	100	77.289	Ovis_aries
ENSCPOG00000001783	CPSF4	100	98.578	ENSPPAG00000043355	CPSF4	100	98.578	Pan_paniscus
ENSCPOG00000001783	CPSF4	100	100.000	ENSPPRG00000003134	CPSF4	100	100.000	Panthera_pardus
ENSCPOG00000001783	CPSF4	87	99.457	ENSPTIG00000005604	CPSF4	87	99.457	Panthera_tigris_altaica
ENSCPOG00000001783	CPSF4	100	98.578	ENSPTRG00000019453	CPSF4	100	98.578	Pan_troglodytes
ENSCPOG00000001783	CPSF4	100	99.052	ENSPANG00000023123	CPSF4	100	99.052	Papio_anubis
ENSCPOG00000001783	CPSF4	100	80.292	ENSPKIG00000014278	cpsf4	100	80.292	Paramormyrops_kingsleyae
ENSCPOG00000001783	CPSF4	79	65.306	ENSPSIG00000018198	-	100	65.285	Pelodiscus_sinensis
ENSCPOG00000001783	CPSF4	78	81.481	ENSPSIG00000011229	CPSF4	100	81.019	Pelodiscus_sinensis
ENSCPOG00000001783	CPSF4	100	80.738	ENSPMGG00000017735	cpsf4	100	78.862	Periophthalmus_magnuspinnatus
ENSCPOG00000001783	CPSF4	100	100.000	ENSPEMG00000004508	Cpsf4	100	100.000	Peromyscus_maniculatus_bairdii
ENSCPOG00000001783	CPSF4	100	88.104	ENSPCIG00000024776	CPSF4	100	88.104	Phascolarctos_cinereus
ENSCPOG00000001783	CPSF4	100	80.303	ENSPFOG00000014912	cpsf4	100	80.303	Poecilia_formosa
ENSCPOG00000001783	CPSF4	100	79.675	ENSPLAG00000009599	cpsf4	100	79.268	Poecilia_latipinna
ENSCPOG00000001783	CPSF4	100	80.303	ENSPMEG00000009790	cpsf4	100	80.303	Poecilia_mexicana
ENSCPOG00000001783	CPSF4	100	79.545	ENSPREG00000018166	cpsf4	100	77.099	Poecilia_reticulata
ENSCPOG00000001783	CPSF4	86	87.607	ENSPPYG00000017378	CPSF4	100	87.607	Pongo_abelii
ENSCPOG00000001783	CPSF4	100	89.591	ENSPCAG00000001892	CPSF4	100	89.591	Procavia_capensis
ENSCPOG00000001783	CPSF4	100	99.526	ENSPCOG00000012771	CPSF4	100	99.526	Propithecus_coquereli
ENSCPOG00000001783	CPSF4	100	84.015	ENSPVAG00000007531	CPSF4	100	84.015	Pteropus_vampyrus
ENSCPOG00000001783	CPSF4	100	80.000	ENSPNYG00000018559	cpsf4	100	80.000	Pundamilia_nyererei
ENSCPOG00000001783	CPSF4	100	81.852	ENSPNAG00000003736	cpsf4	100	81.852	Pygocentrus_nattereri
ENSCPOG00000001783	CPSF4	100	100.000	ENSRNOG00000000985	Cpsf4	100	100.000	Rattus_norvegicus
ENSCPOG00000001783	CPSF4	83	98.864	ENSRBIG00000033886	CPSF4	100	98.864	Rhinopithecus_bieti
ENSCPOG00000001783	CPSF4	100	99.180	ENSRROG00000040431	CPSF4	100	99.180	Rhinopithecus_roxellana
ENSCPOG00000001783	CPSF4	100	99.052	ENSSBOG00000020493	CPSF4	100	99.052	Saimiri_boliviensis_boliviensis
ENSCPOG00000001783	CPSF4	100	88.104	ENSSHAG00000011533	CPSF4	100	88.104	Sarcophilus_harrisii
ENSCPOG00000001783	CPSF4	100	81.522	ENSSFOG00015007883	cpsf4	100	81.522	Scleropages_formosus
ENSCPOG00000001783	CPSF4	100	86.122	ENSSMAG00000006374	cpsf4	100	86.122	Scophthalmus_maximus
ENSCPOG00000001783	CPSF4	100	80.899	ENSSDUG00000018887	cpsf4	100	80.899	Seriola_dumerili
ENSCPOG00000001783	CPSF4	100	80.899	ENSSLDG00000019078	cpsf4	100	81.648	Seriola_lalandi_dorsalis
ENSCPOG00000001783	CPSF4	86	88.889	ENSSARG00000012416	CPSF4	100	88.889	Sorex_araneus
ENSCPOG00000001783	CPSF4	100	85.502	ENSSPUG00000003549	CPSF4	100	84.015	Sphenodon_punctatus
ENSCPOG00000001783	CPSF4	95	64.807	ENSSPUG00000014803	-	97	64.135	Sphenodon_punctatus
ENSCPOG00000001783	CPSF4	100	87.705	ENSSPAG00000006174	cpsf4	100	87.705	Stegastes_partitus
ENSCPOG00000001783	CPSF4	100	99.590	ENSSSCG00000026896	CPSF4	100	99.590	Sus_scrofa
ENSCPOG00000001783	CPSF4	100	93.496	ENSTGUG00000007552	CPSF4	100	93.496	Taeniopygia_guttata
ENSCPOG00000001783	CPSF4	100	79.087	ENSTRUG00000024220	cpsf4	100	79.087	Takifugu_rubripes
ENSCPOG00000001783	CPSF4	100	78.707	ENSTNIG00000006265	cpsf4	100	79.468	Tetraodon_nigroviridis
ENSCPOG00000001783	CPSF4	86	76.923	ENSTBEG00000011406	CPSF4	100	77.350	Tupaia_belangeri
ENSCPOG00000001783	CPSF4	100	78.439	ENSTTRG00000003007	CPSF4	100	78.439	Tursiops_truncatus
ENSCPOG00000001783	CPSF4	91	99.550	ENSUAMG00000008051	CPSF4	85	99.550	Ursus_americanus
ENSCPOG00000001783	CPSF4	100	99.590	ENSUMAG00000009474	CPSF4	100	99.590	Ursus_maritimus
ENSCPOG00000001783	CPSF4	100	99.590	ENSVVUG00000008824	CPSF4	100	99.590	Vulpes_vulpes
ENSCPOG00000001783	CPSF4	99	61.278	ENSXETG00000004641	cpsf4l	99	60.526	Xenopus_tropicalis
ENSCPOG00000001783	CPSF4	100	79.928	ENSXETG00000009892	cpsf4	100	81.362	Xenopus_tropicalis
ENSCPOG00000001783	CPSF4	100	84.360	ENSXCOG00000016040	cpsf4	100	84.360	Xiphophorus_couchianus
ENSCPOG00000001783	CPSF4	100	80.303	ENSXMAG00000024670	cpsf4	100	80.303	Xiphophorus_maculatus