EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCPOG00000002263 (Gene tree)
Gene ID: 100732149
Gene Symbol: PARN
Alias: DAN
Full Name: poly(A)-specific ribonuclease
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Minus strand
Length: 154868 bases
Position: chrDS562859.1:33235763-33390630
Accession: 100732149
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000002054	R3H	PF01424.22	2.6e-05	1	1
ENSCPOP00000022282	R3H	PF01424.22	2.9e-05	1	1
ENSCPOP00000002054	RNA_bind	PF08675.11	2.1e-32	1	1
ENSCPOP00000022282	RNA_bind	PF08675.11	2.3e-32	1	1
ENSCPOP00000022282	CAF1	PF04857.20	3.1e-89	1	1
ENSCPOP00000002054	CAF1	PF04857.20	1.5e-70	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000002295	PARN-202	1815	-	ENSCPOP00000002054	604 (aa)	-	H0UY53
ENSCPOT00000043478	PARN-201	2065	XM_003477767	ENSCPOP00000022282	637 (aa)	XP_003477815	A0A286XA21

Gene Model

Click here to download ENSCPOG00000002263's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000002263's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000002263	PARN	100	91.080	ENSG00000140694	PARN	100	98.305	Homo_sapiens
ENSCPOG00000002263	PARN	100	88.732	ENSAMEG00000011208	PARN	100	88.732	Ailuropoda_melanoleuca
ENSCPOG00000002263	PARN	85	76.291	ENSACIG00000000619	parn	83	76.291	Amphilophus_citrinellus
ENSCPOG00000002263	PARN	92	71.912	ENSAOCG00000003465	parn	84	71.912	Amphiprion_ocellaris
ENSCPOG00000002263	PARN	74	76.744	ENSAPEG00000010661	parn	91	76.744	Amphiprion_percula
ENSCPOG00000002263	PARN	99	68.196	ENSATEG00000004661	parn	88	70.418	Anabas_testudineus
ENSCPOG00000002263	PARN	99	81.962	ENSAPLG00000013914	PARN	99	81.962	Anas_platyrhynchos
ENSCPOG00000002263	PARN	100	77.419	ENSACAG00000004973	PARN	100	77.370	Anolis_carolinensis
ENSCPOG00000002263	PARN	100	89.828	ENSANAG00000031516	PARN	100	98.305	Aotus_nancymaae
ENSCPOG00000002263	PARN	91	73.801	ENSACLG00000004742	parn	84	73.801	Astatotilapia_calliptera
ENSCPOG00000002263	PARN	91	70.812	ENSAMXG00000012390	parn	93	70.812	Astyanax_mexicanus
ENSCPOG00000002263	PARN	100	87.147	ENSBTAG00000018097	PARN	100	89.428	Bos_taurus
ENSCPOG00000002263	PARN	100	90.610	ENSCJAG00000015866	PARN	100	98.305	Callithrix_jacchus
ENSCPOG00000002263	PARN	100	89.028	ENSCAFG00000018795	PARN	100	89.028	Canis_familiaris
ENSCPOG00000002263	PARN	100	89.028	ENSCAFG00020024126	PARN	100	89.028	Canis_lupus_dingo
ENSCPOG00000002263	PARN	100	90.125	ENSCHIG00000018143	PARN	100	90.125	Capra_hircus
ENSCPOG00000002263	PARN	74	68.319	ENSCAPG00000007984	PARN	78	68.319	Cavia_aperea
ENSCPOG00000002263	PARN	100	90.297	ENSCCAG00000030367	PARN	100	98.305	Cebus_capucinus
ENSCPOG00000002263	PARN	90	95.943	ENSCATG00000041368	PARN	100	98.305	Cercocebus_atys
ENSCPOG00000002263	PARN	52	35.172	ENSCATG00000033196	PNLDC1	70	35.172	Cercocebus_atys
ENSCPOG00000002263	PARN	100	94.349	ENSCLAG00000015406	PARN	99	94.349	Chinchilla_lanigera
ENSCPOG00000002263	PARN	100	91.080	ENSCSAG00000008142	PARN	100	91.080	Chlorocebus_sabaeus
ENSCPOG00000002263	PARN	99	73.534	ENSCHOG00000007014	PARN	100	73.534	Choloepus_hoffmanni
ENSCPOG00000002263	PARN	88	82.155	ENSCPBG00000006609	PARN	94	84.261	Chrysemys_picta_bellii
ENSCPOG00000002263	PARN	80	44.278	ENSCING00000010142	-	99	44.278	Ciona_intestinalis
ENSCPOG00000002263	PARN	100	78.875	ENSCANG00000028849	-	100	98.305	Colobus_angolensis_palliatus
ENSCPOG00000002263	PARN	58	33.571	ENSCGRG00001011981	-	76	33.571	Cricetulus_griseus_chok1gshd
ENSCPOG00000002263	PARN	100	84.531	ENSCGRG00001012096	Parn	100	84.531	Cricetulus_griseus_chok1gshd
ENSCPOG00000002263	PARN	100	84.531	ENSCGRG00000004939	Parn	100	84.531	Cricetulus_griseus_crigri
ENSCPOG00000002263	PARN	91	71.138	ENSCSEG00000002064	parn	100	64.706	Cynoglossus_semilaevis
ENSCPOG00000002263	PARN	91	72.945	ENSCVAG00000014848	parn	83	72.945	Cyprinodon_variegatus
ENSCPOG00000002263	PARN	100	63.623	ENSDARG00000102634	parn	100	59.259	Danio_rerio
ENSCPOG00000002263	PARN	100	90.282	ENSDNOG00000000833	PARN	100	90.282	Dasypus_novemcinctus
ENSCPOG00000002263	PARN	74	91.635	ENSETEG00000014828	-	69	91.635	Echinops_telfairi
ENSCPOG00000002263	PARN	100	89.028	ENSEASG00005011400	PARN	100	89.028	Equus_asinus_asinus
ENSCPOG00000002263	PARN	100	88.558	ENSECAG00000017792	PARN	100	88.558	Equus_caballus
ENSCPOG00000002263	PARN	86	81.900	ENSEEUG00000010370	PARN	86	81.900	Erinaceus_europaeus
ENSCPOG00000002263	PARN	90	71.256	ENSELUG00000013139	parn	75	71.256	Esox_lucius
ENSCPOG00000002263	PARN	100	90.125	ENSFCAG00000044961	PARN	100	94.915	Felis_catus
ENSCPOG00000002263	PARN	99	81.458	ENSFALG00000003911	PARN	98	81.458	Ficedula_albicollis
ENSCPOG00000002263	PARN	100	93.407	ENSFDAG00000009234	PARN	100	93.407	Fukomys_damarensis
ENSCPOG00000002263	PARN	90	69.479	ENSFHEG00000013738	parn	92	77.966	Fundulus_heteroclitus
ENSCPOG00000002263	PARN	83	75.746	ENSGMOG00000003231	parn	97	75.746	Gadus_morhua
ENSCPOG00000002263	PARN	100	80.062	ENSGALG00000003091	PARN	100	80.062	Gallus_gallus
ENSCPOG00000002263	PARN	90	72.806	ENSGAFG00000011061	parn	84	72.175	Gambusia_affinis
ENSCPOG00000002263	PARN	83	76.119	ENSGACG00000019501	parn	100	68.062	Gasterosteus_aculeatus
ENSCPOG00000002263	PARN	51	77.301	ENSGAGG00000023281	PARN	83	77.301	Gopherus_agassizii
ENSCPOG00000002263	PARN	97	91.465	ENSGGOG00000025224	PARN	100	98.305	Gorilla_gorilla
ENSCPOG00000002263	PARN	91	73.801	ENSHBUG00000017906	parn	90	76.164	Haplochromis_burtoni
ENSCPOG00000002263	PARN	100	93.878	ENSHGLG00000010886	PARN	100	93.878	Heterocephalus_glaber_female
ENSCPOG00000002263	PARN	100	93.878	ENSHGLG00100014659	PARN	100	93.878	Heterocephalus_glaber_male
ENSCPOG00000002263	PARN	82	72.779	ENSHCOG00000008683	parn	91	72.779	Hippocampus_comes
ENSCPOG00000002263	PARN	84	65.291	ENSIPUG00000012401	parn	79	65.291	Ictalurus_punctatus
ENSCPOG00000002263	PARN	100	90.267	ENSSTOG00000007519	PARN	100	90.267	Ictidomys_tridecemlineatus
ENSCPOG00000002263	PARN	100	87.304	ENSJJAG00000023049	Parn	100	87.304	Jaculus_jaculus
ENSCPOG00000002263	PARN	91	73.333	ENSKMAG00000009462	parn	83	73.333	Kryptolebias_marmoratus
ENSCPOG00000002263	PARN	92	72.148	ENSLBEG00000009167	parn	90	72.148	Labrus_bergylta
ENSCPOG00000002263	PARN	79	77.778	ENSLACG00000004207	PARN	100	76.887	Latimeria_chalumnae
ENSCPOG00000002263	PARN	92	75.000	ENSLOCG00000000715	parn	85	74.660	Lepisosteus_oculatus
ENSCPOG00000002263	PARN	100	89.342	ENSLAFG00000015036	PARN	100	89.342	Loxodonta_africana
ENSCPOG00000002263	PARN	100	86.250	ENSMFAG00000044852	PARN	100	98.305	Macaca_fascicularis
ENSCPOG00000002263	PARN	100	90.923	ENSMMUG00000018849	PARN	100	98.305	Macaca_mulatta
ENSCPOG00000002263	PARN	100	91.080	ENSMNEG00000045108	PARN	100	98.305	Macaca_nemestrina
ENSCPOG00000002263	PARN	100	90.923	ENSMLEG00000031743	PARN	100	98.305	Mandrillus_leucophaeus
ENSCPOG00000002263	PARN	90	72.712	ENSMAMG00000006939	parn	82	72.712	Mastacembelus_armatus
ENSCPOG00000002263	PARN	91	73.801	ENSMZEG00005013590	parn	90	75.933	Maylandia_zebra
ENSCPOG00000002263	PARN	95	80.460	ENSMGAG00000001004	PARN	95	80.460	Meleagris_gallopavo
ENSCPOG00000002263	PARN	100	78.858	ENSMAUG00000008025	Parn	100	78.858	Mesocricetus_auratus
ENSCPOG00000002263	PARN	52	33.562	ENSMAUG00000012298	Pnldc1	68	33.562	Mesocricetus_auratus
ENSCPOG00000002263	PARN	100	91.379	ENSMICG00000016053	PARN	100	96.610	Microcebus_murinus
ENSCPOG00000002263	PARN	78	89.676	ENSMOCG00000022211	Parn	100	89.676	Microtus_ochrogaster
ENSCPOG00000002263	PARN	100	63.752	ENSMMOG00000011333	parn	87	74.953	Mola_mola
ENSCPOG00000002263	PARN	78	92.137	ENSMODG00000004915	PARN	99	92.137	Monodelphis_domestica
ENSCPOG00000002263	PARN	83	77.654	ENSMALG00000019426	parn	91	77.654	Monopterus_albus
ENSCPOG00000002263	PARN	100	84.326	MGP_CAROLIEiJ_G0020466	Parn	100	84.326	Mus_caroli
ENSCPOG00000002263	PARN	100	83.856	ENSMUSG00000022685	Parn	100	91.463	Mus_musculus
ENSCPOG00000002263	PARN	100	84.013	MGP_PahariEiJ_G0016172	Parn	100	84.013	Mus_pahari
ENSCPOG00000002263	PARN	100	84.013	MGP_SPRETEiJ_G0021361	Parn	100	84.013	Mus_spretus
ENSCPOG00000002263	PARN	100	89.655	ENSMPUG00000014464	PARN	100	89.655	Mustela_putorius_furo
ENSCPOG00000002263	PARN	77	92.105	ENSMLUG00000005414	PARN	100	92.105	Myotis_lucifugus
ENSCPOG00000002263	PARN	83	75.514	ENSNBRG00000006805	parn	90	75.514	Neolamprologus_brichardi
ENSCPOG00000002263	PARN	100	90.610	ENSNLEG00000010241	PARN	100	98.305	Nomascus_leucogenys
ENSCPOG00000002263	PARN	85	91.892	ENSMEUG00000008178	-	84	91.892	Notamacropus_eugenii
ENSCPOG00000002263	PARN	99	84.469	ENSOPRG00000012187	PARN	100	84.469	Ochotona_princeps
ENSCPOG00000002263	PARN	100	89.127	ENSODEG00000001617	PARN	100	89.127	Octodon_degus
ENSCPOG00000002263	PARN	100	68.558	ENSONIG00000000151	parn	100	68.098	Oreochromis_niloticus
ENSCPOG00000002263	PARN	59	79.630	ENSOANG00000020155	-	97	79.474	Ornithorhynchus_anatinus
ENSCPOG00000002263	PARN	99	89.873	ENSOCUG00000000322	PARN	99	89.873	Oryctolagus_cuniculus
ENSCPOG00000002263	PARN	91	71.966	ENSORLG00020010313	parn	85	71.966	Oryzias_latipes_hni
ENSCPOG00000002263	PARN	91	71.282	ENSORLG00015000300	parn	85	71.282	Oryzias_latipes_hsok
ENSCPOG00000002263	PARN	91	71.380	ENSOMEG00000019555	parn	97	67.421	Oryzias_melastigma
ENSCPOG00000002263	PARN	77	91.919	ENSOGAG00000014626	PARN	100	91.919	Otolemur_garnettii
ENSCPOG00000002263	PARN	77	94.939	ENSOARG00000007574	PARN	100	94.939	Ovis_aries
ENSCPOG00000002263	PARN	100	91.080	ENSPPAG00000031438	PARN	100	98.305	Pan_paniscus
ENSCPOG00000002263	PARN	100	89.969	ENSPPRG00000018583	PARN	100	94.915	Panthera_pardus
ENSCPOG00000002263	PARN	100	90.125	ENSPTIG00000012135	PARN	100	94.915	Panthera_tigris_altaica
ENSCPOG00000002263	PARN	100	90.767	ENSPTRG00000007792	PARN	100	98.305	Pan_troglodytes
ENSCPOG00000002263	PARN	100	87.793	ENSPANG00000020099	PARN	100	98.305	Papio_anubis
ENSCPOG00000002263	PARN	91	71.724	ENSPKIG00000022807	parn	90	67.521	Paramormyrops_kingsleyae
ENSCPOG00000002263	PARN	95	83.471	ENSPSIG00000014804	PARN	100	80.936	Pelodiscus_sinensis
ENSCPOG00000002263	PARN	81	76.070	ENSPMGG00000014431	parn	74	74.579	Periophthalmus_magnuspinnatus
ENSCPOG00000002263	PARN	100	82.316	ENSPEMG00000018439	Parn	100	82.316	Peromyscus_maniculatus_bairdii
ENSCPOG00000002263	PARN	81	67.115	ENSPMAG00000003956	parn	99	67.115	Petromyzon_marinus
ENSCPOG00000002263	PARN	66	85.106	ENSPCIG00000001259	PARN	91	89.831	Phascolarctos_cinereus
ENSCPOG00000002263	PARN	91	72.384	ENSPFOG00000012823	parn	84	71.501	Poecilia_formosa
ENSCPOG00000002263	PARN	91	72.556	ENSPLAG00000006395	parn	84	71.669	Poecilia_latipinna
ENSCPOG00000002263	PARN	91	72.556	ENSPMEG00000007711	parn	84	72.420	Poecilia_mexicana
ENSCPOG00000002263	PARN	91	72.384	ENSPREG00000000147	parn	84	72.250	Poecilia_reticulata
ENSCPOG00000002263	PARN	100	90.484	ENSPPYG00000007123	PARN	100	90.484	Pongo_abelii
ENSCPOG00000002263	PARN	95	79.504	ENSPCAG00000001741	PARN	100	79.504	Procavia_capensis
ENSCPOG00000002263	PARN	100	88.401	ENSPCOG00000019292	PARN	100	96.610	Propithecus_coquereli
ENSCPOG00000002263	PARN	99	86.212	ENSPVAG00000002547	PARN	100	86.212	Pteropus_vampyrus
ENSCPOG00000002263	PARN	91	73.801	ENSPNYG00000006835	parn	90	73.184	Pundamilia_nyererei
ENSCPOG00000002263	PARN	78	75.150	ENSPNAG00000018905	parn	83	75.150	Pygocentrus_nattereri
ENSCPOG00000002263	PARN	100	81.887	ENSRNOG00000002912	Parn	97	87.755	Rattus_norvegicus
ENSCPOG00000002263	PARN	52	86.186	ENSRBIG00000018726	PARN	100	86.186	Rhinopithecus_bieti
ENSCPOG00000002263	PARN	52	86.186	ENSRROG00000011162	-	100	86.186	Rhinopithecus_roxellana
ENSCPOG00000002263	PARN	100	88.732	ENSSBOG00000034726	PARN	100	98.305	Saimiri_boliviensis_boliviensis
ENSCPOG00000002263	PARN	65	91.847	ENSSHAG00000008493	PARN	93	91.847	Sarcophilus_harrisii
ENSCPOG00000002263	PARN	62	30.073	ENSSHAG00000015192	PNLDC1	65	30.073	Sarcophilus_harrisii
ENSCPOG00000002263	PARN	96	70.704	ENSSFOG00015014165	parn	88	76.083	Scleropages_formosus
ENSCPOG00000002263	PARN	90	70.984	ENSSMAG00000000685	parn	100	61.728	Scophthalmus_maximus
ENSCPOG00000002263	PARN	91	72.081	ENSSDUG00000014555	parn	84	72.081	Seriola_dumerili
ENSCPOG00000002263	PARN	81	88.018	ENSSARG00000014339	PARN	100	77.029	Sorex_araneus
ENSCPOG00000002263	PARN	100	83.229	ENSSPUG00000007719	PARN	100	83.229	Sphenodon_punctatus
ENSCPOG00000002263	PARN	92	73.142	ENSSPAG00000007095	parn	92	69.580	Stegastes_partitus
ENSCPOG00000002263	PARN	100	88.715	ENSSSCG00000007878	PARN	89	88.715	Sus_scrofa
ENSCPOG00000002263	PARN	99	81.487	ENSTGUG00000004971	PARN	99	81.487	Taeniopygia_guttata
ENSCPOG00000002263	PARN	55	31.198	ENSTGUG00000011418	PNLDC1	68	31.198	Taeniopygia_guttata
ENSCPOG00000002263	PARN	100	67.957	ENSTNIG00000008252	parn	100	68.111	Tetraodon_nigroviridis
ENSCPOG00000002263	PARN	91	76.166	ENSTBEG00000010407	PARN	100	76.166	Tupaia_belangeri
ENSCPOG00000002263	PARN	99	85.261	ENSTTRG00000002843	PARN	100	85.261	Tursiops_truncatus
ENSCPOG00000002263	PARN	68	80.963	ENSUAMG00000008283	PARN	90	80.963	Ursus_americanus
ENSCPOG00000002263	PARN	100	89.185	ENSUMAG00000004527	PARN	100	89.185	Ursus_maritimus
ENSCPOG00000002263	PARN	94	87.793	ENSVPAG00000008968	PARN	97	87.793	Vicugna_pacos
ENSCPOG00000002263	PARN	100	89.498	ENSVVUG00000019509	PARN	100	89.498	Vulpes_vulpes
ENSCPOG00000002263	PARN	100	73.281	ENSXETG00000010994	parn	100	82.129	Xenopus_tropicalis
ENSCPOG00000002263	PARN	90	69.707	ENSXCOG00000015990	parn	96	69.153	Xiphophorus_couchianus
ENSCPOG00000002263	PARN	92	72.420	ENSXMAG00000014783	parn	84	72.420	Xiphophorus_maculatus