EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPOG00000002555 (Gene tree)
Gene ID: 100720068
Gene Symbol: PABPC5
Alias: PABP5
Full Name: poly(A) binding protein cytoplasmic 5
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Minus strand
Length: 2101 bases
Position: chrDS562881.1:11568001-11570101
Accession: 100720068
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000015189	RRM_5	PF13893.6	4e-12	1	2
ENSCPOP00000015189	RRM_5	PF13893.6	4e-12	2	2
ENSCPOP00000015189	RRM_1	PF00076.22	2.4e-78	1	4
ENSCPOP00000015189	RRM_1	PF00076.22	2.4e-78	2	4
ENSCPOP00000015189	RRM_1	PF00076.22	2.4e-78	3	4
ENSCPOP00000015189	RRM_1	PF00076.22	2.4e-78	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000002589	PABPC5-201	1574	XM_003470963	ENSCPOP00000015189	382 (aa)	XP_003471011	H0VWW1

Gene Model

Click here to download ENSCPOG00000002555's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000002555's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPOG00000002555	PABPC5	94	64.052	ENSCPOG00000012917	PABPC1	54	64.052
ENSCPOG00000002555	PABPC5	94	35.802	ENSCPOG00000010472	ELAVL2	86	35.802
ENSCPOG00000002555	PABPC5	96	57.143	ENSCPOG00000033167	PABPC4L	96	57.022
ENSCPOG00000002555	PABPC5	93	58.163	ENSCPOG00000009525	-	98	57.812
ENSCPOG00000002555	PABPC5	96	57.025	ENSCPOG00000013633	PABPC1L	61	57.303
ENSCPOG00000002555	PABPC5	95	65.289	ENSCPOG00000009552	PABPC4	61	65.449

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000002555	PABPC5	99	94.488	ENSG00000174740	PABPC5	99	94.488	Homo_sapiens
ENSCPOG00000002555	PABPC5	99	93.963	ENSAMEG00000020114	PABPC5	100	93.963	Ailuropoda_melanoleuca
ENSCPOG00000002555	PABPC5	99	94.488	ENSANAG00000005063	PABPC5	99	94.488	Aotus_nancymaae
ENSCPOG00000002555	PABPC5	100	94.241	ENSBTAG00000019942	PABPC5	100	94.241	Bos_taurus
ENSCPOG00000002555	PABPC5	99	94.488	ENSCJAG00000003665	PABPC5	99	94.488	Callithrix_jacchus
ENSCPOG00000002555	PABPC5	100	93.455	ENSCAFG00000017452	PABPC5	100	93.455	Canis_familiaris
ENSCPOG00000002555	PABPC5	100	93.194	ENSCHIG00000019004	PABPC5	100	93.194	Capra_hircus
ENSCPOG00000002555	PABPC5	100	93.717	ENSTSYG00000036351	PABPC5	100	93.717	Carlito_syrichta
ENSCPOG00000002555	PABPC5	99	96.859	ENSCAPG00000010714	PABPC5	100	96.859	Cavia_aperea
ENSCPOG00000002555	PABPC5	99	94.488	ENSCCAG00000032154	PABPC5	99	94.488	Cebus_capucinus
ENSCPOG00000002555	PABPC5	99	94.488	ENSCATG00000043083	PABPC5	99	94.488	Cercocebus_atys
ENSCPOG00000002555	PABPC5	100	94.764	ENSCLAG00000000647	PABPC5	100	94.764	Chinchilla_lanigera
ENSCPOG00000002555	PABPC5	99	94.488	ENSCSAG00000000065	PABPC5	99	94.488	Chlorocebus_sabaeus
ENSCPOG00000002555	PABPC5	99	94.488	ENSCANG00000011473	PABPC5	99	94.488	Colobus_angolensis_palliatus
ENSCPOG00000002555	PABPC5	100	92.670	ENSCGRG00000018699	Pabpc5	100	92.670	Cricetulus_griseus_crigri
ENSCPOG00000002555	PABPC5	100	75.718	ENSETEG00000011832	PABPC5	100	75.718	Echinops_telfairi
ENSCPOG00000002555	PABPC5	100	94.241	ENSEASG00005014396	PABPC5	100	94.241	Equus_asinus_asinus
ENSCPOG00000002555	PABPC5	100	94.241	ENSECAG00000003452	PABPC5	100	94.241	Equus_caballus
ENSCPOG00000002555	PABPC5	100	93.717	ENSFCAG00000004998	PABPC5	100	93.717	Felis_catus
ENSCPOG00000002555	PABPC5	100	94.764	ENSFDAG00000000126	PABPC5	100	94.764	Fukomys_damarensis
ENSCPOG00000002555	PABPC5	99	94.488	ENSGGOG00000007622	PABPC5	99	94.488	Gorilla_gorilla
ENSCPOG00000002555	PABPC5	95	92.202	ENSJJAG00000011960	Pabpc5	100	92.202	Jaculus_jaculus
ENSCPOG00000002555	PABPC5	99	94.488	ENSMFAG00000024561	PABPC5	99	94.488	Macaca_fascicularis
ENSCPOG00000002555	PABPC5	99	94.488	ENSMMUG00000011562	PABPC5	99	94.488	Macaca_mulatta
ENSCPOG00000002555	PABPC5	99	94.488	ENSMNEG00000037604	PABPC5	99	94.488	Macaca_nemestrina
ENSCPOG00000002555	PABPC5	99	94.488	ENSMLEG00000028318	PABPC5	99	94.488	Mandrillus_leucophaeus
ENSCPOG00000002555	PABPC5	100	93.455	ENSMICG00000041706	PABPC5	100	93.455	Microcebus_murinus
ENSCPOG00000002555	PABPC5	100	92.147	ENSMOCG00000001554	Pabpc5	100	92.147	Microtus_ochrogaster
ENSCPOG00000002555	PABPC5	99	90.526	MGP_CAROLIEiJ_G0033367	Pabpc5	99	90.526	Mus_caroli
ENSCPOG00000002555	PABPC5	99	91.053	ENSMUSG00000034732	Pabpc5	99	91.053	Mus_musculus
ENSCPOG00000002555	PABPC5	100	91.361	MGP_PahariEiJ_G0031908	Pabpc5	100	91.361	Mus_pahari
ENSCPOG00000002555	PABPC5	99	91.053	MGP_SPRETEiJ_G0034533	Pabpc5	99	91.053	Mus_spretus
ENSCPOG00000002555	PABPC5	100	92.932	ENSMPUG00000018465	PABPC5	100	92.932	Mustela_putorius_furo
ENSCPOG00000002555	PABPC5	100	92.670	ENSMLUG00000008244	PABPC5	100	92.670	Myotis_lucifugus
ENSCPOG00000002555	PABPC5	95	91.284	ENSNGAG00000004371	Pabpc5	100	91.284	Nannospalax_galili
ENSCPOG00000002555	PABPC5	99	94.488	ENSNLEG00000035086	PABPC5	99	94.488	Nomascus_leucogenys
ENSCPOG00000002555	PABPC5	98	95.475	ENSOPRG00000000856	PABPC5	100	95.475	Ochotona_princeps
ENSCPOG00000002555	PABPC5	100	93.979	ENSOCUG00000010919	PABPC5	100	93.979	Oryctolagus_cuniculus
ENSCPOG00000002555	PABPC5	100	94.503	ENSOGAG00000006882	PABPC5	100	94.503	Otolemur_garnettii
ENSCPOG00000002555	PABPC5	100	93.455	ENSOARG00000010260	PABPC5	100	93.455	Ovis_aries
ENSCPOG00000002555	PABPC5	99	94.226	ENSPPAG00000007378	PABPC5	99	94.226	Pan_paniscus
ENSCPOG00000002555	PABPC5	100	93.717	ENSPPRG00000010742	PABPC5	100	93.717	Panthera_pardus
ENSCPOG00000002555	PABPC5	100	93.717	ENSPTIG00000001480	PABPC5	100	93.717	Panthera_tigris_altaica
ENSCPOG00000002555	PABPC5	99	94.488	ENSPTRG00000022078	PABPC5	99	94.488	Pan_troglodytes
ENSCPOG00000002555	PABPC5	99	94.488	ENSPANG00000018282	PABPC5	99	94.488	Papio_anubis
ENSCPOG00000002555	PABPC5	100	92.147	ENSPEMG00000000171	Pabpc5	100	92.147	Peromyscus_maniculatus_bairdii
ENSCPOG00000002555	PABPC5	99	94.488	ENSPPYG00000020526	PABPC5	99	94.488	Pongo_abelii
ENSCPOG00000002555	PABPC5	99	94.182	ENSPCAG00000015577	PABPC5	100	94.182	Procavia_capensis
ENSCPOG00000002555	PABPC5	100	93.717	ENSPCOG00000000676	PABPC5	100	93.717	Propithecus_coquereli
ENSCPOG00000002555	PABPC5	100	93.979	ENSPVAG00000006465	PABPC5	100	93.979	Pteropus_vampyrus
ENSCPOG00000002555	PABPC5	100	91.885	ENSRNOG00000003354	Pabpc5	100	91.885	Rattus_norvegicus
ENSCPOG00000002555	PABPC5	99	94.488	ENSRBIG00000011760	PABPC5	99	94.488	Rhinopithecus_bieti
ENSCPOG00000002555	PABPC5	99	94.488	ENSRROG00000036708	PABPC5	99	94.488	Rhinopithecus_roxellana
ENSCPOG00000002555	PABPC5	99	94.226	ENSSBOG00000008658	PABPC5	99	94.226	Saimiri_boliviensis_boliviensis
ENSCPOG00000002555	PABPC5	100	91.885	ENSSARG00000014012	PABPC5	100	91.885	Sorex_araneus
ENSCPOG00000002555	PABPC5	100	93.455	ENSSSCG00000040194	PABPC5	100	93.455	Sus_scrofa
ENSCPOG00000002555	PABPC5	100	95.026	ENSTBEG00000016482	PABPC5	100	95.026	Tupaia_belangeri
ENSCPOG00000002555	PABPC5	100	93.717	ENSUAMG00000013627	PABPC5	100	93.717	Ursus_americanus
ENSCPOG00000002555	PABPC5	100	93.455	ENSUMAG00000023934	PABPC5	100	93.455	Ursus_maritimus
ENSCPOG00000002555	PABPC5	100	93.717	ENSVPAG00000001063	PABPC5	100	93.717	Vicugna_pacos
ENSCPOG00000002555	PABPC5	100	93.717	ENSVVUG00000013172	PABPC5	100	93.717	Vulpes_vulpes