EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCPOG00000003338 (Gene tree)
Gene ID: 100731691
Gene Symbol: SSB
Alias: LARP3|La|La/SSB
Full Name: Sjogren syndrome antigen B
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Minus strand
Length: 8125 bases
Position: chrDS562858.1:19666572-19674696
Accession: 100731691
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000003016	RRM_1	PF00076.22	2.1e-16	1	1
ENSCPOP00000027268	RRM_1	PF00076.22	2.4e-16	1	1
ENSCPOP00000003016	RRM_3	PF08777.11	7.7e-32	1	1
ENSCPOP00000027268	RRM_3	PF08777.11	8.3e-32	1	1
ENSCPOP00000003016	La	PF05383.17	4.6e-22	1	1
ENSCPOP00000027268	La	PF05383.17	5.4e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000003381	SSB-202	1170	-	ENSCPOP00000003016	390 (aa)	-	H0V0M5
ENSCPOT00000038094	SSB-201	1369	XM_003478645	ENSCPOP00000027268	405 (aa)	XP_003478693	A0A286XPF3

Gene Model

Click here to download ENSCPOG00000003338's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000003338's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000003338	SSB	100	95.588	ENSG00000138385	SSB	100	98.370	Homo_sapiens
ENSCPOG00000003338	SSB	98	55.473	ENSAPOG00000003448	ssb	100	55.911	Acanthochromis_polyacanthus
ENSCPOG00000003338	SSB	100	91.905	ENSAMEG00000010507	SSB	100	91.905	Ailuropoda_melanoleuca
ENSCPOG00000003338	SSB	92	58.556	ENSACIG00000001738	ssb	97	58.556	Amphilophus_citrinellus
ENSCPOG00000003338	SSB	98	55.721	ENSAOCG00000020398	ssb	100	56.404	Amphiprion_ocellaris
ENSCPOG00000003338	SSB	98	55.970	ENSAPEG00000020395	ssb	100	56.650	Amphiprion_percula
ENSCPOG00000003338	SSB	99	58.621	ENSATEG00000016884	ssb	100	59.113	Anabas_testudineus
ENSCPOG00000003338	SSB	100	71.663	ENSAPLG00000006109	SSB	100	73.131	Anas_platyrhynchos
ENSCPOG00000003338	SSB	100	68.049	ENSACAG00000017008	SSB	99	68.780	Anolis_carolinensis
ENSCPOG00000003338	SSB	100	86.173	ENSANAG00000027195	-	100	86.173	Aotus_nancymaae
ENSCPOG00000003338	SSB	99	54.950	ENSACLG00000010798	ssb	100	54.703	Astatotilapia_calliptera
ENSCPOG00000003338	SSB	98	55.392	ENSAMXG00000012606	ssb	100	56.901	Astyanax_mexicanus
ENSCPOG00000003338	SSB	100	95.309	ENSBTAG00000008716	SSB	100	95.309	Bos_taurus
ENSCPOG00000003338	SSB	74	34.967	WBGene00016653	C44E4.4	93	31.937	Caenorhabditis_elegans
ENSCPOG00000003338	SSB	100	95.309	ENSCJAG00000045073	SSB	100	95.309	Callithrix_jacchus
ENSCPOG00000003338	SSB	100	95.320	ENSCAFG00000012418	SSB	100	95.320	Canis_familiaris
ENSCPOG00000003338	SSB	100	95.320	ENSCAFG00020002900	SSB	100	95.320	Canis_lupus_dingo
ENSCPOG00000003338	SSB	100	89.383	ENSCHIG00000022196	-	100	89.383	Capra_hircus
ENSCPOG00000003338	SSB	100	95.309	ENSCHIG00000022624	-	100	95.309	Capra_hircus
ENSCPOG00000003338	SSB	100	96.049	ENSTSYG00000000097	SSB	100	96.049	Carlito_syrichta
ENSCPOG00000003338	SSB	100	96.049	ENSCCAG00000035147	SSB	100	96.049	Cebus_capucinus
ENSCPOG00000003338	SSB	100	71.111	ENSCATG00000042909	-	100	71.111	Cercocebus_atys
ENSCPOG00000003338	SSB	100	75.309	ENSCATG00000036701	SSB	100	75.309	Cercocebus_atys
ENSCPOG00000003338	SSB	100	98.272	ENSCLAG00000015617	-	100	98.272	Chinchilla_lanigera
ENSCPOG00000003338	SSB	100	95.802	ENSCSAG00000015200	SSB	89	95.802	Chlorocebus_sabaeus
ENSCPOG00000003338	SSB	98	87.154	ENSCSAG00000018390	-	100	87.154	Chlorocebus_sabaeus
ENSCPOG00000003338	SSB	100	95.556	ENSCHOG00000007763	SSB	100	95.556	Choloepus_hoffmanni
ENSCPOG00000003338	SSB	100	79.707	ENSCPBG00000006519	SSB	100	80.196	Chrysemys_picta_bellii
ENSCPOG00000003338	SSB	98	74.687	ENSCANG00000028838	-	95	74.687	Colobus_angolensis_palliatus
ENSCPOG00000003338	SSB	100	95.802	ENSCANG00000027695	SSB	100	95.802	Colobus_angolensis_palliatus
ENSCPOG00000003338	SSB	100	81.235	ENSCANG00000033240	-	100	81.235	Colobus_angolensis_palliatus
ENSCPOG00000003338	SSB	100	79.607	ENSCGRG00001024831	Ssb	100	81.327	Cricetulus_griseus_chok1gshd
ENSCPOG00000003338	SSB	100	79.607	ENSCGRG00000005387	Ssb	100	81.327	Cricetulus_griseus_crigri
ENSCPOG00000003338	SSB	98	57.250	ENSCSEG00000011599	ssb	99	58.000	Cynoglossus_semilaevis
ENSCPOG00000003338	SSB	99	58.477	ENSCVAG00000021558	ssb	100	58.968	Cyprinodon_variegatus
ENSCPOG00000003338	SSB	98	57.568	ENSDARG00000029252	ssb	99	57.960	Danio_rerio
ENSCPOG00000003338	SSB	100	95.802	ENSDNOG00000013450	SSB	100	95.802	Dasypus_novemcinctus
ENSCPOG00000003338	SSB	100	88.161	ENSDORG00000005543	Ssb	100	88.161	Dipodomys_ordii
ENSCPOG00000003338	SSB	85	34.706	FBgn0011638	La	92	35.040	Drosophila_melanogaster
ENSCPOG00000003338	SSB	58	94.527	ENSETEG00000004614	-	61	94.527	Echinops_telfairi
ENSCPOG00000003338	SSB	96	48.438	ENSEBUG00000001237	ssb	96	48.698	Eptatretus_burgeri
ENSCPOG00000003338	SSB	100	96.543	ENSEASG00005022835	SSB	100	96.543	Equus_asinus_asinus
ENSCPOG00000003338	SSB	100	96.790	ENSECAG00000018495	SSB	100	96.790	Equus_caballus
ENSCPOG00000003338	SSB	83	89.286	ENSEEUG00000008077	SSB	86	89.286	Erinaceus_europaeus
ENSCPOG00000003338	SSB	98	59.453	ENSELUG00000020929	ssb	100	59.951	Esox_lucius
ENSCPOG00000003338	SSB	100	95.074	ENSFCAG00000011601	SSB	100	95.074	Felis_catus
ENSCPOG00000003338	SSB	100	75.854	ENSFALG00000000930	SSB	100	77.017	Ficedula_albicollis
ENSCPOG00000003338	SSB	100	98.272	ENSFDAG00000000598	SSB	100	98.272	Fukomys_damarensis
ENSCPOG00000003338	SSB	72	55.853	ENSFHEG00000003268	ssb	98	55.063	Fundulus_heteroclitus
ENSCPOG00000003338	SSB	97	55.087	ENSGMOG00000002664	ssb	99	55.335	Gadus_morhua
ENSCPOG00000003338	SSB	100	76.528	ENSGALG00000009677	SSB	100	76.528	Gallus_gallus
ENSCPOG00000003338	SSB	99	56.650	ENSGAFG00000002749	ssb	100	56.897	Gambusia_affinis
ENSCPOG00000003338	SSB	99	54.854	ENSGACG00000005107	ssb	100	55.206	Gasterosteus_aculeatus
ENSCPOG00000003338	SSB	100	79.707	ENSGAGG00000007807	SSB	100	79.951	Gopherus_agassizii
ENSCPOG00000003338	SSB	100	78.765	ENSGGOG00000024891	-	100	78.765	Gorilla_gorilla
ENSCPOG00000003338	SSB	63	92.444	ENSGGOG00000023471	-	100	92.444	Gorilla_gorilla
ENSCPOG00000003338	SSB	99	54.455	ENSHBUG00000006584	ssb	100	54.208	Haplochromis_burtoni
ENSCPOG00000003338	SSB	100	96.602	ENSHGLG00000017580	-	100	96.602	Heterocephalus_glaber_female
ENSCPOG00000003338	SSB	100	88.395	ENSHGLG00000005832	-	100	88.395	Heterocephalus_glaber_female
ENSCPOG00000003338	SSB	100	89.435	ENSHGLG00000004478	-	100	89.435	Heterocephalus_glaber_female
ENSCPOG00000003338	SSB	100	83.704	ENSHGLG00100008767	-	100	83.704	Heterocephalus_glaber_male
ENSCPOG00000003338	SSB	100	96.602	ENSHGLG00100003084	-	100	96.602	Heterocephalus_glaber_male
ENSCPOG00000003338	SSB	98	55.919	ENSHCOG00000019011	ssb	99	56.171	Hippocampus_comes
ENSCPOG00000003338	SSB	97	59.204	ENSIPUG00000003681	SSB	99	59.653	Ictalurus_punctatus
ENSCPOG00000003338	SSB	100	97.037	ENSSTOG00000008416	SSB	100	97.037	Ictidomys_tridecemlineatus
ENSCPOG00000003338	SSB	100	81.928	ENSJJAG00000023158	-	100	81.928	Jaculus_jaculus
ENSCPOG00000003338	SSB	99	69.154	ENSJJAG00000016250	-	99	69.154	Jaculus_jaculus
ENSCPOG00000003338	SSB	99	56.897	ENSKMAG00000017317	ssb	100	57.389	Kryptolebias_marmoratus
ENSCPOG00000003338	SSB	98	53.980	ENSLBEG00000017345	ssb	100	54.926	Labrus_bergylta
ENSCPOG00000003338	SSB	99	67.813	ENSLACG00000014056	SSB	99	70.098	Latimeria_chalumnae
ENSCPOG00000003338	SSB	98	67.581	ENSLOCG00000007933	ssb	99	68.080	Lepisosteus_oculatus
ENSCPOG00000003338	SSB	75	69.868	ENSLAFG00000026721	-	99	69.868	Loxodonta_africana
ENSCPOG00000003338	SSB	100	86.730	ENSLAFG00000000867	-	100	89.573	Loxodonta_africana
ENSCPOG00000003338	SSB	100	79.753	ENSLAFG00000028909	-	100	79.753	Loxodonta_africana
ENSCPOG00000003338	SSB	100	96.049	ENSMFAG00000039066	SSB	100	96.049	Macaca_fascicularis
ENSCPOG00000003338	SSB	89	82.759	ENSMFAG00000041478	-	100	82.759	Macaca_fascicularis
ENSCPOG00000003338	SSB	100	96.049	ENSMMUG00000023051	SSB	100	96.049	Macaca_mulatta
ENSCPOG00000003338	SSB	100	80.988	ENSMMUG00000011724	-	97	80.988	Macaca_mulatta
ENSCPOG00000003338	SSB	99	66.998	ENSMMUG00000039889	-	100	67.246	Macaca_mulatta
ENSCPOG00000003338	SSB	100	83.415	ENSMNEG00000028321	SSB	85	99.130	Macaca_nemestrina
ENSCPOG00000003338	SSB	89	82.759	ENSMNEG00000034698	-	100	82.759	Macaca_nemestrina
ENSCPOG00000003338	SSB	100	68.395	ENSMLEG00000042644	-	100	68.395	Mandrillus_leucophaeus
ENSCPOG00000003338	SSB	100	96.049	ENSMLEG00000035717	SSB	100	96.049	Mandrillus_leucophaeus
ENSCPOG00000003338	SSB	99	59.360	ENSMAMG00000004800	ssb	100	59.852	Mastacembelus_armatus
ENSCPOG00000003338	SSB	99	54.950	ENSMZEG00005005749	ssb	100	54.703	Maylandia_zebra
ENSCPOG00000003338	SSB	100	76.471	ENSMGAG00000010328	SSB	99	77.561	Meleagris_gallopavo
ENSCPOG00000003338	SSB	99	96.774	ENSMICG00000028252	-	99	96.774	Microcebus_murinus
ENSCPOG00000003338	SSB	98	88.161	ENSMICG00000033304	-	98	87.629	Microcebus_murinus
ENSCPOG00000003338	SSB	100	70.960	ENSMODG00000019271	-	100	70.960	Monodelphis_domestica
ENSCPOG00000003338	SSB	100	67.677	ENSMODG00000007027	-	99	80.503	Monodelphis_domestica
ENSCPOG00000003338	SSB	100	79.759	ENSMODG00000008227	-	100	80.482	Monodelphis_domestica
ENSCPOG00000003338	SSB	90	59.128	ENSMALG00000008045	ssb	90	59.416	Monopterus_albus
ENSCPOG00000003338	SSB	100	79.036	MGP_CAROLIEiJ_G0023629	-	100	92.391	Mus_caroli
ENSCPOG00000003338	SSB	100	78.313	ENSMUSG00000068882	Ssb	100	92.391	Mus_musculus
ENSCPOG00000003338	SSB	100	78.313	MGP_PahariEiJ_G0025081	-	100	92.391	Mus_pahari
ENSCPOG00000003338	SSB	100	78.313	MGP_SPRETEiJ_G0024551	Ssb	100	92.391	Mus_spretus
ENSCPOG00000003338	SSB	100	95.556	ENSMPUG00000000785	SSB	100	95.556	Mustela_putorius_furo
ENSCPOG00000003338	SSB	100	91.190	ENSMLUG00000016316	SSB	100	91.190	Myotis_lucifugus
ENSCPOG00000003338	SSB	99	54.950	ENSNBRG00000012661	ssb	100	54.703	Neolamprologus_brichardi
ENSCPOG00000003338	SSB	100	96.296	ENSNLEG00000004958	SSB	100	96.296	Nomascus_leucogenys
ENSCPOG00000003338	SSB	100	69.270	ENSNLEG00000028754	-	100	69.773	Nomascus_leucogenys
ENSCPOG00000003338	SSB	61	89.516	ENSMEUG00000001650	-	100	89.516	Notamacropus_eugenii
ENSCPOG00000003338	SSB	72	75.862	ENSOPRG00000008475	-	100	75.862	Ochotona_princeps
ENSCPOG00000003338	SSB	93	91.534	ENSODEG00000004202	-	100	91.534	Octodon_degus
ENSCPOG00000003338	SSB	99	54.703	ENSONIG00000008776	ssb	100	54.455	Oreochromis_niloticus
ENSCPOG00000003338	SSB	100	85.185	ENSOANG00000008543	SSB	100	85.185	Ornithorhynchus_anatinus
ENSCPOG00000003338	SSB	100	96.296	ENSOCUG00000010396	SSB	100	96.296	Oryctolagus_cuniculus
ENSCPOG00000003338	SSB	99	58.128	ENSORLG00000017208	ssb	100	58.374	Oryzias_latipes
ENSCPOG00000003338	SSB	99	58.374	ENSORLG00020022574	ssb	100	58.621	Oryzias_latipes_hni
ENSCPOG00000003338	SSB	99	57.882	ENSORLG00015016592	ssb	100	58.128	Oryzias_latipes_hsok
ENSCPOG00000003338	SSB	98	58.105	ENSOMEG00000003193	ssb	100	59.012	Oryzias_melastigma
ENSCPOG00000003338	SSB	100	90.047	ENSOGAG00000029768	SSB	100	90.047	Otolemur_garnettii
ENSCPOG00000003338	SSB	100	94.815	ENSOARG00000002906	SSB	100	94.815	Ovis_aries
ENSCPOG00000003338	SSB	100	95.588	ENSPPAG00000042673	SSB	100	95.588	Pan_paniscus
ENSCPOG00000003338	SSB	100	77.778	ENSPPAG00000032427	-	100	86.822	Pan_paniscus
ENSCPOG00000003338	SSB	97	74.365	ENSPPAG00000006189	-	96	78.226	Pan_paniscus
ENSCPOG00000003338	SSB	100	95.074	ENSPPRG00000006599	SSB	100	95.074	Panthera_pardus
ENSCPOG00000003338	SSB	100	94.828	ENSPTIG00000011021	SSB	97	94.828	Panthera_tigris_altaica
ENSCPOG00000003338	SSB	100	95.588	ENSPTRG00000012620	SSB	100	95.588	Pan_troglodytes
ENSCPOG00000003338	SSB	100	74.074	ENSPTRG00000042880	-	100	74.074	Pan_troglodytes
ENSCPOG00000003338	SSB	100	69.821	ENSPANG00000034126	-	100	70.332	Papio_anubis
ENSCPOG00000003338	SSB	100	96.049	ENSPANG00000007440	SSB	100	96.049	Papio_anubis
ENSCPOG00000003338	SSB	98	66.667	ENSPANG00000031877	-	95	66.667	Papio_anubis
ENSCPOG00000003338	SSB	98	62.594	ENSPKIG00000019325	ssb	99	63.457	Paramormyrops_kingsleyae
ENSCPOG00000003338	SSB	100	76.528	ENSPSIG00000002265	SSB	93	77.017	Pelodiscus_sinensis
ENSCPOG00000003338	SSB	84	55.331	ENSPMGG00000020075	ssb	90	55.718	Periophthalmus_magnuspinnatus
ENSCPOG00000003338	SSB	82	50.769	ENSPMAG00000002982	ssb	100	46.512	Petromyzon_marinus
ENSCPOG00000003338	SSB	100	84.483	ENSPCIG00000028591	-	100	84.729	Phascolarctos_cinereus
ENSCPOG00000003338	SSB	99	57.635	ENSPFOG00000009650	ssb	100	57.882	Poecilia_formosa
ENSCPOG00000003338	SSB	99	57.389	ENSPLAG00000020498	ssb	100	57.635	Poecilia_latipinna
ENSCPOG00000003338	SSB	99	57.143	ENSPMEG00000001051	ssb	100	57.635	Poecilia_mexicana
ENSCPOG00000003338	SSB	94	57.552	ENSPREG00000003708	ssb	99	57.812	Poecilia_reticulata
ENSCPOG00000003338	SSB	100	96.296	ENSPPYG00000012919	SSB	100	96.296	Pongo_abelii
ENSCPOG00000003338	SSB	95	90.862	ENSPCAG00000010276	SSB	100	90.862	Procavia_capensis
ENSCPOG00000003338	SSB	100	84.691	ENSPCOG00000023189	-	100	84.691	Propithecus_coquereli
ENSCPOG00000003338	SSB	100	92.840	ENSPCOG00000015741	-	100	92.840	Propithecus_coquereli
ENSCPOG00000003338	SSB	87	95.763	ENSPVAG00000006615	SSB	100	95.763	Pteropus_vampyrus
ENSCPOG00000003338	SSB	99	54.950	ENSPNYG00000006444	ssb	100	54.703	Pundamilia_nyererei
ENSCPOG00000003338	SSB	98	57.143	ENSPNAG00000011708	ssb	100	58.252	Pygocentrus_nattereri
ENSCPOG00000003338	SSB	100	79.851	ENSRNOG00000011606	AABR07061825.1	100	79.851	Rattus_norvegicus
ENSCPOG00000003338	SSB	100	79.277	ENSRNOG00000007998	Ssb	100	79.277	Rattus_norvegicus
ENSCPOG00000003338	SSB	100	69.212	ENSRBIG00000029918	-	100	69.212	Rhinopithecus_bieti
ENSCPOG00000003338	SSB	100	80.299	ENSRBIG00000041972	SSB	88	99.130	Rhinopithecus_bieti
ENSCPOG00000003338	SSB	94	79.683	ENSRBIG00000041232	-	98	79.683	Rhinopithecus_bieti
ENSCPOG00000003338	SSB	89	87.569	ENSRBIG00000041608	-	98	87.569	Rhinopithecus_bieti
ENSCPOG00000003338	SSB	100	95.802	ENSRROG00000040346	SSB	100	95.802	Rhinopithecus_roxellana
ENSCPOG00000003338	SSB	98	80.808	ENSRROG00000031684	-	100	80.808	Rhinopithecus_roxellana
ENSCPOG00000003338	SSB	100	79.064	ENSRROG00000007149	-	100	79.064	Rhinopithecus_roxellana
ENSCPOG00000003338	SSB	98	86.000	ENSRROG00000034102	-	98	85.930	Rhinopithecus_roxellana
ENSCPOG00000003338	SSB	100	96.296	ENSSBOG00000027204	SSB	100	96.296	Saimiri_boliviensis_boliviensis
ENSCPOG00000003338	SSB	100	83.990	ENSSHAG00000018062	SSB	100	84.236	Sarcophilus_harrisii
ENSCPOG00000003338	SSB	99	64.548	ENSSFOG00015000550	ssb	100	65.037	Scleropages_formosus
ENSCPOG00000003338	SSB	98	55.208	ENSSMAG00000013885	ssb	99	57.447	Scophthalmus_maximus
ENSCPOG00000003338	SSB	99	57.882	ENSSDUG00000020117	ssb	100	58.128	Seriola_dumerili
ENSCPOG00000003338	SSB	99	57.069	ENSSLDG00000002525	ssb	100	57.069	Seriola_lalandi_dorsalis
ENSCPOG00000003338	SSB	95	86.423	ENSSARG00000007747	SSB	100	86.423	Sorex_araneus
ENSCPOG00000003338	SSB	100	77.641	ENSSPUG00000012112	SSB	100	77.641	Sphenodon_punctatus
ENSCPOG00000003338	SSB	99	56.158	ENSSPAG00000005696	ssb	100	56.650	Stegastes_partitus
ENSCPOG00000003338	SSB	98	78.086	ENSSSCG00000015938	SSB	98	78.643	Sus_scrofa
ENSCPOG00000003338	SSB	100	77.017	ENSTGUG00000007942	SSB	100	77.017	Taeniopygia_guttata
ENSCPOG00000003338	SSB	99	56.931	ENSTRUG00000017839	ssb	100	57.531	Takifugu_rubripes
ENSCPOG00000003338	SSB	92	58.967	ENSTNIG00000000915	ssb	100	60.054	Tetraodon_nigroviridis
ENSCPOG00000003338	SSB	83	99.130	ENSTBEG00000009056	SSB	82	99.130	Tupaia_belangeri
ENSCPOG00000003338	SSB	100	94.828	ENSTTRG00000002152	SSB	100	94.828	Tursiops_truncatus
ENSCPOG00000003338	SSB	93	96.552	ENSUAMG00000027833	SSB	99	96.552	Ursus_americanus
ENSCPOG00000003338	SSB	100	95.813	ENSUMAG00000013907	SSB	100	95.813	Ursus_maritimus
ENSCPOG00000003338	SSB	100	95.062	ENSVPAG00000007183	SSB	100	95.062	Vicugna_pacos
ENSCPOG00000003338	SSB	100	95.320	ENSVVUG00000016573	SSB	78	95.320	Vulpes_vulpes
ENSCPOG00000003338	SSB	100	58.645	ENSXETG00000025402	ssb	100	60.373	Xenopus_tropicalis
ENSCPOG00000003338	SSB	94	55.614	ENSXCOG00000019109	ssb	99	55.875	Xiphophorus_couchianus
ENSCPOG00000003338	SSB	99	56.897	ENSXMAG00000004888	ssb	100	57.143	Xiphophorus_maculatus