EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCPOG00000004773 (Gene tree)
Gene ID: 100721537
Gene Symbol: SRBD1
Alias: FLJ10379
Full Name: S1 RNA binding domain 1
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Minus strand
Length: 227488 bases
Position: chrDS562873.1:29387826-29615313
Accession: 100721537
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000004296	S1	PF00575.23	2.1e-08	1	1
ENSCPOP00000032311	S1	PF00575.23	2.1e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000033041	SRBD1-201	3111	XM_003473064	ENSCPOP00000032311	986 (aa)	XP_003473112	A0A286Y473
ENSCPOT00000004824	SRBD1-202	2922	-	ENSCPOP00000004296	973 (aa)	-	H0V3X4

Gene Model

Click here to download ENSCPOG00000004773's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000004773's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000004773	SRBD1	100	87.249	ENSG00000068784	SRBD1	100	87.249	Homo_sapiens
ENSCPOG00000004773	SRBD1	98	52.467	ENSAPOG00000005103	si:ch211-117n7.8	98	52.467	Acanthochromis_polyacanthus
ENSCPOG00000004773	SRBD1	100	89.829	ENSAMEG00000005993	SRBD1	100	89.405	Ailuropoda_melanoleuca
ENSCPOG00000004773	SRBD1	95	53.605	ENSACIG00000009875	si:ch211-117n7.8	96	53.910	Amphilophus_citrinellus
ENSCPOG00000004773	SRBD1	99	52.395	ENSAOCG00000024718	si:ch211-117n7.8	99	52.590	Amphiprion_ocellaris
ENSCPOG00000004773	SRBD1	96	53.767	ENSAPEG00000002645	si:ch211-117n7.8	99	53.767	Amphiprion_percula
ENSCPOG00000004773	SRBD1	85	57.042	ENSATEG00000010844	si:ch211-117n7.8	99	52.295	Anabas_testudineus
ENSCPOG00000004773	SRBD1	100	70.916	ENSAPLG00000006313	SRBD1	100	70.945	Anas_platyrhynchos
ENSCPOG00000004773	SRBD1	100	87.450	ENSANAG00000025573	SRBD1	100	87.450	Aotus_nancymaae
ENSCPOG00000004773	SRBD1	95	52.960	ENSACLG00000024219	si:ch211-117n7.8	94	53.161	Astatotilapia_calliptera
ENSCPOG00000004773	SRBD1	86	61.164	ENSAMXG00000004294	SRBD1	93	57.495	Astyanax_mexicanus
ENSCPOG00000004773	SRBD1	94	93.038	ENSBTAG00000007508	SRBD1	99	93.038	Bos_taurus
ENSCPOG00000004773	SRBD1	100	86.647	ENSCJAG00000000727	SRBD1	100	86.647	Callithrix_jacchus
ENSCPOG00000004773	SRBD1	100	89.839	ENSCAFG00000002554	SRBD1	100	89.839	Canis_familiaris
ENSCPOG00000004773	SRBD1	100	87.210	ENSCAFG00020026284	SRBD1	99	92.482	Canis_lupus_dingo
ENSCPOG00000004773	SRBD1	100	86.633	ENSCHIG00000016535	SRBD1	98	87.337	Capra_hircus
ENSCPOG00000004773	SRBD1	100	89.368	ENSTSYG00000012797	SRBD1	100	89.268	Carlito_syrichta
ENSCPOG00000004773	SRBD1	100	87.651	ENSCCAG00000025589	SRBD1	100	87.651	Cebus_capucinus
ENSCPOG00000004773	SRBD1	100	87.952	ENSCATG00000039530	SRBD1	100	87.952	Cercocebus_atys
ENSCPOG00000004773	SRBD1	100	94.467	ENSCLAG00000008623	SRBD1	100	94.467	Chinchilla_lanigera
ENSCPOG00000004773	SRBD1	100	88.153	ENSCSAG00000013350	SRBD1	100	88.153	Chlorocebus_sabaeus
ENSCPOG00000004773	SRBD1	88	94.118	ENSCHOG00000003805	SRBD1	87	94.118	Choloepus_hoffmanni
ENSCPOG00000004773	SRBD1	100	73.541	ENSCPBG00000005677	SRBD1	100	73.865	Chrysemys_picta_bellii
ENSCPOG00000004773	SRBD1	79	42.894	ENSCING00000005950	-	99	42.894	Ciona_intestinalis
ENSCPOG00000004773	SRBD1	80	43.223	ENSCSAVG00000000861	-	99	43.223	Ciona_savignyi
ENSCPOG00000004773	SRBD1	99	87.626	ENSCANG00000016307	SRBD1	99	87.626	Colobus_angolensis_palliatus
ENSCPOG00000004773	SRBD1	100	85.410	ENSCGRG00001000513	Srbd1	100	85.410	Cricetulus_griseus_chok1gshd
ENSCPOG00000004773	SRBD1	100	85.410	ENSCGRG00000002283	Srbd1	100	85.410	Cricetulus_griseus_crigri
ENSCPOG00000004773	SRBD1	86	56.163	ENSCSEG00000000856	si:ch211-117n7.8	86	56.279	Cynoglossus_semilaevis
ENSCPOG00000004773	SRBD1	85	57.801	ENSCVAG00000020212	si:ch211-117n7.8	90	57.801	Cyprinodon_variegatus
ENSCPOG00000004773	SRBD1	100	88.388	ENSDNOG00000018686	SRBD1	100	88.388	Dasypus_novemcinctus
ENSCPOG00000004773	SRBD1	100	87.576	ENSDORG00000010468	Srbd1	100	87.576	Dipodomys_ordii
ENSCPOG00000004773	SRBD1	80	36.262	FBgn0051156	CG31156	79	37.107	Drosophila_melanogaster
ENSCPOG00000004773	SRBD1	89	83.607	ENSETEG00000000739	SRBD1	92	83.607	Echinops_telfairi
ENSCPOG00000004773	SRBD1	74	47.554	ENSEBUG00000008902	si:ch211-117n7.8	96	47.862	Eptatretus_burgeri
ENSCPOG00000004773	SRBD1	100	86.546	ENSEASG00005003132	SRBD1	97	92.357	Equus_asinus_asinus
ENSCPOG00000004773	SRBD1	100	89.859	ENSECAG00000013865	SRBD1	98	89.859	Equus_caballus
ENSCPOG00000004773	SRBD1	96	54.890	ENSELUG00000012592	si:ch211-117n7.8	91	54.735	Esox_lucius
ENSCPOG00000004773	SRBD1	100	89.960	ENSFCAG00000005101	SRBD1	100	89.960	Felis_catus
ENSCPOG00000004773	SRBD1	100	69.184	ENSFALG00000012966	SRBD1	100	69.184	Ficedula_albicollis
ENSCPOG00000004773	SRBD1	98	92.437	ENSFDAG00000016670	SRBD1	99	92.437	Fukomys_damarensis
ENSCPOG00000004773	SRBD1	95	53.983	ENSFHEG00000019480	si:ch211-117n7.8	93	53.983	Fundulus_heteroclitus
ENSCPOG00000004773	SRBD1	50	53.241	ENSGMOG00000018010	-	100	53.241	Gadus_morhua
ENSCPOG00000004773	SRBD1	100	70.964	ENSGALG00000009990	SRBD1	100	71.486	Gallus_gallus
ENSCPOG00000004773	SRBD1	98	51.714	ENSGAFG00000019664	si:ch211-117n7.8	97	52.337	Gambusia_affinis
ENSCPOG00000004773	SRBD1	63	60.064	ENSGACG00000010794	si:ch211-117n7.8	100	60.640	Gasterosteus_aculeatus
ENSCPOG00000004773	SRBD1	85	80.719	ENSGAGG00000006166	SRBD1	99	80.792	Gopherus_agassizii
ENSCPOG00000004773	SRBD1	97	87.732	ENSGGOG00000005910	SRBD1	100	87.719	Gorilla_gorilla
ENSCPOG00000004773	SRBD1	95	47.279	ENSHBUG00000013207	si:ch211-117n7.8	96	47.594	Haplochromis_burtoni
ENSCPOG00000004773	SRBD1	99	92.740	ENSHGLG00000018153	-	99	92.740	Heterocephalus_glaber_female
ENSCPOG00000004773	SRBD1	99	92.638	ENSHGLG00100015183	-	99	92.638	Heterocephalus_glaber_male
ENSCPOG00000004773	SRBD1	87	60.698	ENSIPUG00000009661	srbd1	99	55.355	Ictalurus_punctatus
ENSCPOG00000004773	SRBD1	100	91.423	ENSSTOG00000005898	SRBD1	100	91.423	Ictidomys_tridecemlineatus
ENSCPOG00000004773	SRBD1	100	80.285	ENSJJAG00000022244	Srbd1	100	80.285	Jaculus_jaculus
ENSCPOG00000004773	SRBD1	85	56.856	ENSKMAG00000003473	si:ch211-117n7.8	84	56.856	Kryptolebias_marmoratus
ENSCPOG00000004773	SRBD1	95	53.782	ENSLBEG00000027518	si:ch211-117n7.8	93	53.782	Labrus_bergylta
ENSCPOG00000004773	SRBD1	86	70.602	ENSLACG00000009790	SRBD1	100	70.602	Latimeria_chalumnae
ENSCPOG00000004773	SRBD1	95	60.000	ENSLOCG00000016360	si:ch211-117n7.8	99	57.560	Lepisosteus_oculatus
ENSCPOG00000004773	SRBD1	100	88.253	ENSMFAG00000042026	SRBD1	100	88.253	Macaca_fascicularis
ENSCPOG00000004773	SRBD1	100	88.052	ENSMMUG00000003490	SRBD1	100	88.052	Macaca_mulatta
ENSCPOG00000004773	SRBD1	100	85.542	ENSMNEG00000034701	SRBD1	100	85.542	Macaca_nemestrina
ENSCPOG00000004773	SRBD1	100	87.851	ENSMLEG00000000745	SRBD1	100	87.851	Mandrillus_leucophaeus
ENSCPOG00000004773	SRBD1	83	56.326	ENSMAMG00000021921	si:ch211-117n7.8	99	50.000	Mastacembelus_armatus
ENSCPOG00000004773	SRBD1	96	52.789	ENSMZEG00005027369	si:ch211-117n7.8	94	53.161	Maylandia_zebra
ENSCPOG00000004773	SRBD1	81	75.594	ENSMGAG00000010273	SRBD1	100	75.469	Meleagris_gallopavo
ENSCPOG00000004773	SRBD1	80	86.364	ENSMAUG00000013916	Srbd1	99	84.431	Mesocricetus_auratus
ENSCPOG00000004773	SRBD1	100	89.859	ENSMICG00000007835	SRBD1	100	89.859	Microcebus_murinus
ENSCPOG00000004773	SRBD1	100	84.264	ENSMOCG00000018716	Srbd1	100	84.264	Microtus_ochrogaster
ENSCPOG00000004773	SRBD1	84	57.297	ENSMMOG00000007507	si:ch211-117n7.8	87	57.297	Mola_mola
ENSCPOG00000004773	SRBD1	99	51.721	ENSMALG00000001562	si:ch211-117n7.8	99	51.819	Monopterus_albus
ENSCPOG00000004773	SRBD1	100	82.724	MGP_CAROLIEiJ_G0021934	Srbd1	99	84.641	Mus_caroli
ENSCPOG00000004773	SRBD1	100	83.130	ENSMUSG00000024135	Srbd1	100	83.130	Mus_musculus
ENSCPOG00000004773	SRBD1	100	81.809	MGP_PahariEiJ_G0020924	Srbd1	100	81.809	Mus_pahari
ENSCPOG00000004773	SRBD1	100	83.028	MGP_SPRETEiJ_G0022850	Srbd1	100	83.028	Mus_spretus
ENSCPOG00000004773	SRBD1	100	85.843	ENSMLUG00000007039	SRBD1	100	85.843	Myotis_lucifugus
ENSCPOG00000004773	SRBD1	100	83.513	ENSNGAG00000011893	Srbd1	100	83.513	Nannospalax_galili
ENSCPOG00000004773	SRBD1	85	56.325	ENSNBRG00000012873	si:ch211-117n7.8	96	52.804	Neolamprologus_brichardi
ENSCPOG00000004773	SRBD1	100	87.349	ENSNLEG00000016877	SRBD1	100	87.349	Nomascus_leucogenys
ENSCPOG00000004773	SRBD1	100	90.853	ENSODEG00000012095	SRBD1	100	90.853	Octodon_degus
ENSCPOG00000004773	SRBD1	99	51.167	ENSONIG00000000945	si:ch211-117n7.8	100	57.983	Oreochromis_niloticus
ENSCPOG00000004773	SRBD1	100	91.019	ENSOCUG00000015385	SRBD1	100	91.019	Oryctolagus_cuniculus
ENSCPOG00000004773	SRBD1	86	53.900	ENSORLG00000004427	si:ch211-117n7.8	84	53.900	Oryzias_latipes
ENSCPOG00000004773	SRBD1	86	56.345	ENSORLG00020012792	si:ch211-117n7.8	84	56.628	Oryzias_latipes_hni
ENSCPOG00000004773	SRBD1	86	56.577	ENSORLG00015018598	si:ch211-117n7.8	84	56.577	Oryzias_latipes_hsok
ENSCPOG00000004773	SRBD1	96	52.787	ENSOMEG00000012229	si:ch211-117n7.8	93	53.046	Oryzias_melastigma
ENSCPOG00000004773	SRBD1	100	84.020	ENSOGAG00000001076	SRBD1	100	84.020	Otolemur_garnettii
ENSCPOG00000004773	SRBD1	100	82.233	ENSOARG00000005958	SRBD1	100	82.913	Ovis_aries
ENSCPOG00000004773	SRBD1	100	87.149	ENSPPAG00000038442	SRBD1	100	87.651	Pan_paniscus
ENSCPOG00000004773	SRBD1	100	89.859	ENSPPRG00000003449	SRBD1	100	89.859	Panthera_pardus
ENSCPOG00000004773	SRBD1	100	89.960	ENSPTIG00000012495	SRBD1	100	89.960	Panthera_tigris_altaica
ENSCPOG00000004773	SRBD1	100	87.048	ENSPTRG00000011889	SRBD1	100	87.550	Pan_troglodytes
ENSCPOG00000004773	SRBD1	100	87.851	ENSPANG00000008063	SRBD1	100	87.851	Papio_anubis
ENSCPOG00000004773	SRBD1	96	55.532	ENSPKIG00000021973	si:ch211-117n7.8	99	53.636	Paramormyrops_kingsleyae
ENSCPOG00000004773	SRBD1	100	73.259	ENSPSIG00000008992	SRBD1	100	73.790	Pelodiscus_sinensis
ENSCPOG00000004773	SRBD1	84	55.266	ENSPMGG00000013348	si:ch211-117n7.8	99	50.858	Periophthalmus_magnuspinnatus
ENSCPOG00000004773	SRBD1	100	83.135	ENSPEMG00000020684	Srbd1	100	83.135	Peromyscus_maniculatus_bairdii
ENSCPOG00000004773	SRBD1	98	52.218	ENSPFOG00000010650	si:ch211-117n7.8	97	52.218	Poecilia_formosa
ENSCPOG00000004773	SRBD1	98	52.270	ENSPLAG00000002141	si:ch211-117n7.8	97	52.270	Poecilia_latipinna
ENSCPOG00000004773	SRBD1	96	54.000	ENSPMEG00000018537	si:ch211-117n7.8	93	54.000	Poecilia_mexicana
ENSCPOG00000004773	SRBD1	96	53.319	ENSPREG00000003258	si:ch211-117n7.8	93	53.319	Poecilia_reticulata
ENSCPOG00000004773	SRBD1	100	80.587	ENSPPYG00000012444	SRBD1	99	80.019	Pongo_abelii
ENSCPOG00000004773	SRBD1	82	82.773	ENSPCAG00000005629	SRBD1	86	82.773	Procavia_capensis
ENSCPOG00000004773	SRBD1	100	76.400	ENSPCOG00000017669	SRBD1	100	75.651	Propithecus_coquereli
ENSCPOG00000004773	SRBD1	100	78.614	ENSPVAG00000001782	SRBD1	100	78.614	Pteropus_vampyrus
ENSCPOG00000004773	SRBD1	95	50.691	ENSPNYG00000000508	si:ch211-117n7.8	96	51.012	Pundamilia_nyererei
ENSCPOG00000004773	SRBD1	96	57.733	ENSPNAG00000013492	SRBD1	94	57.733	Pygocentrus_nattereri
ENSCPOG00000004773	SRBD1	100	81.929	ENSRNOG00000014720	Srbd1	99	82.234	Rattus_norvegicus
ENSCPOG00000004773	SRBD1	99	87.726	ENSRBIG00000033486	SRBD1	99	87.726	Rhinopithecus_bieti
ENSCPOG00000004773	SRBD1	99	87.726	ENSRROG00000041599	SRBD1	99	87.726	Rhinopithecus_roxellana
ENSCPOG00000004773	SRBD1	100	87.249	ENSSBOG00000024982	SRBD1	100	87.249	Saimiri_boliviensis_boliviensis
ENSCPOG00000004773	SRBD1	84	60.168	ENSSFOG00015001128	si:ch211-117n7.8	90	60.168	Scleropages_formosus
ENSCPOG00000004773	SRBD1	84	57.945	ENSSMAG00000018256	si:ch211-117n7.8	82	58.115	Scophthalmus_maximus
ENSCPOG00000004773	SRBD1	84	57.757	ENSSLDG00000023189	si:ch211-117n7.8	83	57.757	Seriola_lalandi_dorsalis
ENSCPOG00000004773	SRBD1	100	78.463	ENSSARG00000009740	SRBD1	100	78.463	Sorex_araneus
ENSCPOG00000004773	SRBD1	90	75.959	ENSSPUG00000010475	SRBD1	100	73.633	Sphenodon_punctatus
ENSCPOG00000004773	SRBD1	89	53.898	ENSSPAG00000008092	-	96	52.088	Stegastes_partitus
ENSCPOG00000004773	SRBD1	100	87.450	ENSSSCG00000008445	SRBD1	97	91.304	Sus_scrofa
ENSCPOG00000004773	SRBD1	84	77.590	ENSTGUG00000003878	SRBD1	100	77.590	Taeniopygia_guttata
ENSCPOG00000004773	SRBD1	99	51.115	ENSTRUG00000007080	si:ch211-117n7.8	93	57.193	Takifugu_rubripes
ENSCPOG00000004773	SRBD1	99	49.854	ENSTNIG00000007464	si:ch211-117n7.8	99	49.854	Tetraodon_nigroviridis
ENSCPOG00000004773	SRBD1	76	96.809	ENSTBEG00000004556	SRBD1	76	96.809	Tupaia_belangeri
ENSCPOG00000004773	SRBD1	93	91.542	ENSTTRG00000011871	SRBD1	93	91.787	Tursiops_truncatus
ENSCPOG00000004773	SRBD1	100	90.131	ENSUAMG00000008126	SRBD1	100	88.526	Ursus_americanus
ENSCPOG00000004773	SRBD1	100	90.131	ENSUMAG00000012902	SRBD1	98	90.131	Ursus_maritimus
ENSCPOG00000004773	SRBD1	91	89.922	ENSVPAG00000006825	SRBD1	99	89.922	Vicugna_pacos
ENSCPOG00000004773	SRBD1	100	89.124	ENSVVUG00000005389	SRBD1	100	89.728	Vulpes_vulpes
ENSCPOG00000004773	SRBD1	100	52.718	ENSXETG00000002760	srbd1	100	53.043	Xenopus_tropicalis
ENSCPOG00000004773	SRBD1	95	53.530	ENSXMAG00000016861	si:ch211-117n7.8	93	53.530	Xiphophorus_maculatus