EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCPOG00000006251 (Gene tree)
Gene ID: 100726680
Gene Symbol: SND1
Alias: TDRD11|p100
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Plus strand
Length: 418748 bases
Position: chrDS562866.1:48339524-48758271
Accession: 100726680
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000005638	TUDOR	PF00567.24	5.1e-27	1	1
ENSCPOP00000005638	SNase	PF00565.17	2.7e-69	1	5
ENSCPOP00000005638	SNase	PF00565.17	2.7e-69	2	5
ENSCPOP00000005638	SNase	PF00565.17	2.7e-69	3	5
ENSCPOP00000005638	SNase	PF00565.17	2.7e-69	4	5
ENSCPOP00000005638	SNase	PF00565.17	2.7e-69	5	5

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000006316	SND1-201	3991	XM_003475164	ENSCPOP00000005638	910 (aa)	XP_003475212	H0V7D2

Gene Model

Click here to download ENSCPOG00000006251's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000006251's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000006251	SND1	100	97.912	ENSG00000197157	SND1	100	97.912	Homo_sapiens
ENSCPOG00000006251	SND1	100	83.662	ENSAPOG00000017599	snd1	99	84.538	Acanthochromis_polyacanthus
ENSCPOG00000006251	SND1	100	97.588	ENSAMEG00000004664	SND1	94	97.588	Ailuropoda_melanoleuca
ENSCPOG00000006251	SND1	98	81.971	ENSACIG00000003551	snd1	99	81.849	Amphilophus_citrinellus
ENSCPOG00000006251	SND1	100	83.443	ENSAOCG00000014166	snd1	99	84.316	Amphiprion_ocellaris
ENSCPOG00000006251	SND1	100	83.443	ENSAPEG00000007067	snd1	99	84.316	Amphiprion_percula
ENSCPOG00000006251	SND1	98	82.793	ENSATEG00000018475	snd1	88	84.036	Anabas_testudineus
ENSCPOG00000006251	SND1	100	98.352	ENSANAG00000034463	SND1	100	98.352	Aotus_nancymaae
ENSCPOG00000006251	SND1	99	82.967	ENSACLG00000022897	snd1	99	83.964	Astatotilapia_calliptera
ENSCPOG00000006251	SND1	99	83.938	ENSAMXG00000016318	snd1	98	84.521	Astyanax_mexicanus
ENSCPOG00000006251	SND1	100	98.571	ENSBTAG00000010692	SND1	100	98.571	Bos_taurus
ENSCPOG00000006251	SND1	98	46.652	WBGene00006626	tsn-1	98	47.091	Caenorhabditis_elegans
ENSCPOG00000006251	SND1	100	98.132	ENSCJAG00000017668	SND1	100	98.132	Callithrix_jacchus
ENSCPOG00000006251	SND1	100	98.022	ENSCAFG00000001700	SND1	100	98.022	Canis_familiaris
ENSCPOG00000006251	SND1	100	98.022	ENSCAFG00020021639	SND1	100	98.022	Canis_lupus_dingo
ENSCPOG00000006251	SND1	100	98.462	ENSCHIG00000023390	SND1	100	98.462	Capra_hircus
ENSCPOG00000006251	SND1	73	98.944	ENSTSYG00000004979	SND1	96	98.944	Carlito_syrichta
ENSCPOG00000006251	SND1	99	86.444	ENSCAPG00000010677	SND1	98	86.496	Cavia_aperea
ENSCPOG00000006251	SND1	100	98.462	ENSCCAG00000036847	SND1	100	98.462	Cebus_capucinus
ENSCPOG00000006251	SND1	100	98.132	ENSCATG00000035214	SND1	100	98.132	Cercocebus_atys
ENSCPOG00000006251	SND1	100	98.352	ENSCLAG00000011796	SND1	100	98.352	Chinchilla_lanigera
ENSCPOG00000006251	SND1	100	98.132	ENSCSAG00000010182	SND1	100	98.132	Chlorocebus_sabaeus
ENSCPOG00000006251	SND1	77	85.294	ENSCHOG00000002218	SND1	86	85.294	Choloepus_hoffmanni
ENSCPOG00000006251	SND1	100	91.538	ENSCPBG00000018094	SND1	98	92.489	Chrysemys_picta_bellii
ENSCPOG00000006251	SND1	98	57.032	ENSCING00000000524	-	98	57.032	Ciona_intestinalis
ENSCPOG00000006251	SND1	99	58.086	ENSCSAVG00000008807	-	99	58.232	Ciona_savignyi
ENSCPOG00000006251	SND1	100	98.132	ENSCANG00000035119	SND1	100	98.132	Colobus_angolensis_palliatus
ENSCPOG00000006251	SND1	100	97.033	ENSCGRG00001022514	Snd1	100	97.033	Cricetulus_griseus_chok1gshd
ENSCPOG00000006251	SND1	97	97.059	ENSCGRG00000012277	Snd1	99	97.059	Cricetulus_griseus_crigri
ENSCPOG00000006251	SND1	98	83.893	ENSCSEG00000008661	snd1	98	83.893	Cynoglossus_semilaevis
ENSCPOG00000006251	SND1	100	83.882	ENSCVAG00000010316	snd1	100	83.563	Cyprinodon_variegatus
ENSCPOG00000006251	SND1	100	83.790	ENSDARG00000006766	snd1	97	87.770	Danio_rerio
ENSCPOG00000006251	SND1	97	94.927	ENSDNOG00000006795	SND1	100	94.927	Dasypus_novemcinctus
ENSCPOG00000006251	SND1	100	98.352	ENSDORG00000000336	Snd1	100	98.352	Dipodomys_ordii
ENSCPOG00000006251	SND1	98	50.270	FBgn0035121	Tudor-SN	98	50.270	Drosophila_melanogaster
ENSCPOG00000006251	SND1	90	100.000	ENSETEG00000000375	SND1	92	100.000	Echinops_telfairi
ENSCPOG00000006251	SND1	57	67.568	ENSEBUG00000014201	-	84	75.956	Eptatretus_burgeri
ENSCPOG00000006251	SND1	100	96.436	ENSEASG00005008513	SND1	100	96.436	Equus_asinus_asinus
ENSCPOG00000006251	SND1	100	98.022	ENSECAG00000011451	SND1	100	98.022	Equus_caballus
ENSCPOG00000006251	SND1	100	86.374	ENSEEUG00000014737	SND1	100	86.374	Erinaceus_europaeus
ENSCPOG00000006251	SND1	99	81.908	ENSELUG00000001805	snd1	95	82.832	Esox_lucius
ENSCPOG00000006251	SND1	100	98.022	ENSFCAG00000008289	SND1	100	98.022	Felis_catus
ENSCPOG00000006251	SND1	100	98.352	ENSFDAG00000015881	SND1	100	98.352	Fukomys_damarensis
ENSCPOG00000006251	SND1	99	81.985	ENSFHEG00000004093	snd1	97	84.517	Fundulus_heteroclitus
ENSCPOG00000006251	SND1	64	73.446	ENSGMOG00000018932	snd1	64	73.446	Gadus_morhua
ENSCPOG00000006251	SND1	100	84.101	ENSGAFG00000008421	snd1	99	85.006	Gambusia_affinis
ENSCPOG00000006251	SND1	100	53.855	ENSGACG00000019793	snd1	98	54.314	Gasterosteus_aculeatus
ENSCPOG00000006251	SND1	100	98.132	ENSGGOG00000009614	SND1	100	98.132	Gorilla_gorilla
ENSCPOG00000006251	SND1	99	83.480	ENSHBUG00000019135	snd1	99	83.964	Haplochromis_burtoni
ENSCPOG00000006251	SND1	100	98.132	ENSHGLG00000003618	SND1	100	98.132	Heterocephalus_glaber_female
ENSCPOG00000006251	SND1	99	97.680	ENSHGLG00100012449	SND1	100	97.680	Heterocephalus_glaber_male
ENSCPOG00000006251	SND1	100	82.675	ENSHCOG00000005266	snd1	98	83.893	Hippocampus_comes
ENSCPOG00000006251	SND1	100	82.604	ENSIPUG00000013279	snd1	98	83.630	Ictalurus_punctatus
ENSCPOG00000006251	SND1	100	98.352	ENSSTOG00000002140	SND1	100	98.352	Ictidomys_tridecemlineatus
ENSCPOG00000006251	SND1	100	98.352	ENSJJAG00000009561	Snd1	100	98.352	Jaculus_jaculus
ENSCPOG00000006251	SND1	100	83.882	ENSKMAG00000016997	snd1	98	84.899	Kryptolebias_marmoratus
ENSCPOG00000006251	SND1	100	85.235	ENSLBEG00000013563	snd1	99	83.315	Labrus_bergylta
ENSCPOG00000006251	SND1	99	84.785	ENSLOCG00000015537	snd1	98	84.785	Lepisosteus_oculatus
ENSCPOG00000006251	SND1	100	97.253	ENSLAFG00000009696	SND1	100	97.253	Loxodonta_africana
ENSCPOG00000006251	SND1	100	98.132	ENSMFAG00000038114	SND1	100	98.132	Macaca_fascicularis
ENSCPOG00000006251	SND1	100	98.132	ENSMMUG00000015432	SND1	100	98.132	Macaca_mulatta
ENSCPOG00000006251	SND1	100	98.132	ENSMNEG00000039808	SND1	100	98.132	Macaca_nemestrina
ENSCPOG00000006251	SND1	100	98.022	ENSMLEG00000029040	SND1	100	98.022	Mandrillus_leucophaeus
ENSCPOG00000006251	SND1	99	83.572	ENSMAMG00000011739	snd1	98	84.263	Mastacembelus_armatus
ENSCPOG00000006251	SND1	99	82.967	ENSMZEG00005005681	snd1	99	83.964	Maylandia_zebra
ENSCPOG00000006251	SND1	100	98.132	ENSMICG00000000097	SND1	100	98.132	Microcebus_murinus
ENSCPOG00000006251	SND1	100	97.692	ENSMOCG00000005040	Snd1	100	97.692	Microtus_ochrogaster
ENSCPOG00000006251	SND1	100	83.224	ENSMMOG00000001795	snd1	99	84.093	Mola_mola
ENSCPOG00000006251	SND1	99	95.095	ENSMODG00000015182	SND1	99	95.095	Monodelphis_domestica
ENSCPOG00000006251	SND1	100	83.114	ENSMALG00000012071	snd1	98	83.929	Monopterus_albus
ENSCPOG00000006251	SND1	100	97.582	MGP_CAROLIEiJ_G0028159	Snd1	100	97.582	Mus_caroli
ENSCPOG00000006251	SND1	100	97.363	ENSMUSG00000001424	Snd1	100	97.363	Mus_musculus
ENSCPOG00000006251	SND1	100	97.582	MGP_PahariEiJ_G0021917	Snd1	100	98.314	Mus_pahari
ENSCPOG00000006251	SND1	100	97.582	MGP_SPRETEiJ_G0029159	Snd1	100	97.582	Mus_spretus
ENSCPOG00000006251	SND1	100	97.692	ENSMPUG00000006545	SND1	100	97.692	Mustela_putorius_furo
ENSCPOG00000006251	SND1	97	96.201	ENSMLUG00000017130	SND1	99	96.201	Myotis_lucifugus
ENSCPOG00000006251	SND1	100	97.912	ENSNGAG00000011186	Snd1	100	97.912	Nannospalax_galili
ENSCPOG00000006251	SND1	99	82.857	ENSNBRG00000006681	snd1	99	83.853	Neolamprologus_brichardi
ENSCPOG00000006251	SND1	100	98.022	ENSNLEG00000012263	SND1	99	99.325	Nomascus_leucogenys
ENSCPOG00000006251	SND1	91	100.000	ENSOPRG00000013405	SND1	91	100.000	Ochotona_princeps
ENSCPOG00000006251	SND1	100	98.462	ENSODEG00000011502	SND1	100	98.462	Octodon_degus
ENSCPOG00000006251	SND1	99	82.857	ENSONIG00000011481	snd1	96	83.853	Oreochromis_niloticus
ENSCPOG00000006251	SND1	98	93.919	ENSOANG00000000817	SND1	99	93.311	Ornithorhynchus_anatinus
ENSCPOG00000006251	SND1	100	97.363	ENSOCUG00000001620	SND1	100	97.363	Oryctolagus_cuniculus
ENSCPOG00000006251	SND1	98	83.687	ENSORLG00000015201	snd1	98	83.687	Oryzias_latipes
ENSCPOG00000006251	SND1	98	83.799	ENSORLG00020013991	snd1	98	83.799	Oryzias_latipes_hni
ENSCPOG00000006251	SND1	98	83.799	ENSORLG00015012436	snd1	98	83.799	Oryzias_latipes_hsok
ENSCPOG00000006251	SND1	100	82.895	ENSOMEG00000006406	snd1	98	84.116	Oryzias_melastigma
ENSCPOG00000006251	SND1	100	97.588	ENSOGAG00000013356	SND1	94	97.588	Otolemur_garnettii
ENSCPOG00000006251	SND1	97	95.593	ENSOARG00000002149	SND1	100	95.593	Ovis_aries
ENSCPOG00000006251	SND1	100	98.022	ENSPPAG00000042947	SND1	100	98.022	Pan_paniscus
ENSCPOG00000006251	SND1	100	98.022	ENSPPRG00000004494	SND1	100	98.022	Panthera_pardus
ENSCPOG00000006251	SND1	100	97.912	ENSPTIG00000014214	SND1	100	97.912	Panthera_tigris_altaica
ENSCPOG00000006251	SND1	100	98.022	ENSPTRG00000023911	SND1	100	98.022	Pan_troglodytes
ENSCPOG00000006251	SND1	97	98.077	ENSPANG00000011997	SND1	99	98.077	Papio_anubis
ENSCPOG00000006251	SND1	99	81.257	ENSPKIG00000023494	snd1	98	81.576	Paramormyrops_kingsleyae
ENSCPOG00000006251	SND1	92	82.515	ENSPMGG00000003629	snd1	100	82.515	Periophthalmus_magnuspinnatus
ENSCPOG00000006251	SND1	100	97.802	ENSPEMG00000010240	Snd1	100	97.802	Peromyscus_maniculatus_bairdii
ENSCPOG00000006251	SND1	97	73.559	ENSPMAG00000007915	-	99	73.559	Petromyzon_marinus
ENSCPOG00000006251	SND1	99	95.318	ENSPCIG00000011561	SND1	99	95.318	Phascolarctos_cinereus
ENSCPOG00000006251	SND1	100	83.553	ENSPFOG00000001557	snd1	99	84.427	Poecilia_formosa
ENSCPOG00000006251	SND1	100	83.553	ENSPLAG00000018459	snd1	96	84.427	Poecilia_latipinna
ENSCPOG00000006251	SND1	100	83.991	ENSPMEG00000006803	snd1	99	84.872	Poecilia_mexicana
ENSCPOG00000006251	SND1	100	83.882	ENSPREG00000002189	snd1	99	84.761	Poecilia_reticulata
ENSCPOG00000006251	SND1	93	98.015	ENSPPYG00000017972	SND1	100	98.015	Pongo_abelii
ENSCPOG00000006251	SND1	100	85.714	ENSPCAG00000011305	SND1	99	85.619	Procavia_capensis
ENSCPOG00000006251	SND1	100	97.912	ENSPCOG00000026791	SND1	100	97.912	Propithecus_coquereli
ENSCPOG00000006251	SND1	100	96.154	ENSPVAG00000013945	SND1	100	96.154	Pteropus_vampyrus
ENSCPOG00000006251	SND1	99	82.967	ENSPNYG00000000932	snd1	99	83.964	Pundamilia_nyererei
ENSCPOG00000006251	SND1	100	83.260	ENSPNAG00000001206	snd1	98	84.222	Pygocentrus_nattereri
ENSCPOG00000006251	SND1	99	97.467	ENSRNOG00000031173	Snd1	99	97.467	Rattus_norvegicus
ENSCPOG00000006251	SND1	73	99.060	ENSRBIG00000027782	-	93	99.240	Rhinopithecus_bieti
ENSCPOG00000006251	SND1	100	98.132	ENSRROG00000033020	SND1	100	98.132	Rhinopithecus_roxellana
ENSCPOG00000006251	SND1	100	98.352	ENSSBOG00000032461	SND1	100	98.352	Saimiri_boliviensis_boliviensis
ENSCPOG00000006251	SND1	98	92.342	ENSSHAG00000015359	SND1	100	92.342	Sarcophilus_harrisii
ENSCPOG00000006251	SND1	100	82.155	ENSSFOG00015001103	snd1	98	83.241	Scleropages_formosus
ENSCPOG00000006251	SND1	98	83.557	ENSSMAG00000001932	snd1	93	83.296	Scophthalmus_maximus
ENSCPOG00000006251	SND1	100	83.443	ENSSDUG00000002699	snd1	92	84.316	Seriola_dumerili
ENSCPOG00000006251	SND1	100	76.206	ENSSLDG00000001950	snd1	98	76.974	Seriola_lalandi_dorsalis
ENSCPOG00000006251	SND1	86	95.283	ENSSARG00000004877	SND1	92	95.283	Sorex_araneus
ENSCPOG00000006251	SND1	73	87.652	ENSSPUG00000017586	SND1	96	87.652	Sphenodon_punctatus
ENSCPOG00000006251	SND1	76	84.941	ENSSPAG00000021398	snd1	96	87.086	Stegastes_partitus
ENSCPOG00000006251	SND1	100	97.912	ENSSSCG00000016590	SND1	100	97.912	Sus_scrofa
ENSCPOG00000006251	SND1	99	83.755	ENSTRUG00000014067	snd1	98	83.333	Takifugu_rubripes
ENSCPOG00000006251	SND1	100	83.004	ENSTNIG00000011019	snd1	95	87.565	Tetraodon_nigroviridis
ENSCPOG00000006251	SND1	93	92.217	ENSTBEG00000003999	SND1	100	92.217	Tupaia_belangeri
ENSCPOG00000006251	SND1	100	93.626	ENSTTRG00000006059	SND1	100	93.626	Tursiops_truncatus
ENSCPOG00000006251	SND1	71	89.610	ENSUAMG00000002820	-	86	89.516	Ursus_americanus
ENSCPOG00000006251	SND1	91	97.719	ENSUAMG00000005604	-	93	97.719	Ursus_americanus
ENSCPOG00000006251	SND1	100	98.022	ENSUMAG00000005960	SND1	100	98.022	Ursus_maritimus
ENSCPOG00000006251	SND1	77	100.000	ENSVPAG00000008302	SND1	74	100.000	Vicugna_pacos
ENSCPOG00000006251	SND1	100	97.802	ENSVVUG00000007226	SND1	100	97.802	Vulpes_vulpes
ENSCPOG00000006251	SND1	97	84.407	ENSXETG00000023043	snd1	100	84.439	Xenopus_tropicalis
ENSCPOG00000006251	SND1	92	81.473	ENSXCOG00000013629	snd1	99	81.473	Xiphophorus_couchianus
ENSCPOG00000006251	SND1	100	84.101	ENSXMAG00000011469	snd1	99	84.983	Xiphophorus_maculatus