EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPOG00000006776 (Gene tree)
Gene ID: 100729921
Gene Symbol: SNRNP200
Alias: ASCC3L1|BRR2|HELIC2|KIAA0788|RP33|U5-200KD
Full Name: small nuclear ribonucleoprotein U5 subunit 200
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Plus strand
Length: 26144 bases
Position: chrDS562879.1:2463546-2489689
Accession: 100729921
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000006107	ResIII	PF04851.15	8.7e-26	1	2
ENSCPOP00000006107	ResIII	PF04851.15	8.7e-26	2	2
ENSCPOP00000006107	DEAD	PF00270.29	1.9e-52	1	2
ENSCPOP00000006107	DEAD	PF00270.29	1.9e-52	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000006845	SNRNP200-201	6845	XM_003471745	ENSCPOP00000006107	2136 (aa)	XP_003471793	H0V8J7

Gene Model

Click here to download ENSCPOG00000006776's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000006776's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPOG00000006776	SNRNP200	86	42.465	ENSCPOG00000013989	ASCC3	80	44.779
ENSCPOG00000006776	SNRNP200	66	32.371	ENSCPOG00000007421	HFM1	56	32.371

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000006776	SNRNP200	100	99.719	ENSG00000144028	SNRNP200	100	99.719	Homo_sapiens
ENSCPOG00000006776	SNRNP200	99	90.747	ENSAPOG00000010223	snrnp200	99	90.637	Acanthochromis_polyacanthus
ENSCPOG00000006776	SNRNP200	100	99.672	ENSAMEG00000008996	SNRNP200	100	99.672	Ailuropoda_melanoleuca
ENSCPOG00000006776	SNRNP200	97	90.096	ENSACIG00000001764	snrnp200	98	90.096	Amphilophus_citrinellus
ENSCPOG00000006776	SNRNP200	99	90.653	ENSAOCG00000024593	snrnp200	100	89.882	Amphiprion_ocellaris
ENSCPOG00000006776	SNRNP200	97	89.936	ENSAPEG00000012554	snrnp200	100	89.936	Amphiprion_percula
ENSCPOG00000006776	SNRNP200	99	90.512	ENSATEG00000022522	snrnp200	99	90.403	Anabas_testudineus
ENSCPOG00000006776	SNRNP200	99	97.595	ENSAPLG00000004313	SNRNP200	100	97.595	Anas_platyrhynchos
ENSCPOG00000006776	SNRNP200	99	97.264	ENSACAG00000000434	SNRNP200	100	97.264	Anolis_carolinensis
ENSCPOG00000006776	SNRNP200	100	95.149	ENSANAG00000036625	SNRNP200	100	95.569	Aotus_nancymaae
ENSCPOG00000006776	SNRNP200	99	90.371	ENSACLG00000011188	snrnp200	99	90.262	Astatotilapia_calliptera
ENSCPOG00000006776	SNRNP200	99	90.465	ENSAMXG00000005684	snrnp200	99	90.356	Astyanax_mexicanus
ENSCPOG00000006776	SNRNP200	100	99.204	ENSBTAG00000000848	SNRNP200	100	99.204	Bos_taurus
ENSCPOG00000006776	SNRNP200	100	99.672	ENSCJAG00000007514	SNRNP200	100	99.672	Callithrix_jacchus
ENSCPOG00000006776	SNRNP200	100	98.880	ENSCAFG00020019979	SNRNP200	100	99.708	Canis_lupus_dingo
ENSCPOG00000006776	SNRNP200	100	99.391	ENSCHIG00000020611	SNRNP200	100	99.391	Capra_hircus
ENSCPOG00000006776	SNRNP200	100	99.719	ENSTSYG00000010467	SNRNP200	100	99.719	Carlito_syrichta
ENSCPOG00000006776	SNRNP200	99	99.718	ENSCAPG00000017234	SNRNP200	99	99.718	Cavia_aperea
ENSCPOG00000006776	SNRNP200	100	99.672	ENSCCAG00000033962	SNRNP200	100	99.672	Cebus_capucinus
ENSCPOG00000006776	SNRNP200	100	99.719	ENSCATG00000015790	SNRNP200	100	99.719	Cercocebus_atys
ENSCPOG00000006776	SNRNP200	100	99.860	ENSCLAG00000004116	SNRNP200	100	99.860	Chinchilla_lanigera
ENSCPOG00000006776	SNRNP200	100	99.672	ENSCSAG00000017369	SNRNP200	100	99.672	Chlorocebus_sabaeus
ENSCPOG00000006776	SNRNP200	75	99.213	ENSCHOG00000012981	-	59	99.213	Choloepus_hoffmanni
ENSCPOG00000006776	SNRNP200	100	97.569	ENSCPBG00000022571	SNRNP200	100	97.569	Chrysemys_picta_bellii
ENSCPOG00000006776	SNRNP200	99	76.460	ENSCING00000005082	-	99	76.600	Ciona_intestinalis
ENSCPOG00000006776	SNRNP200	100	94.208	ENSCANG00000033932	SNRNP200	100	99.652	Colobus_angolensis_palliatus
ENSCPOG00000006776	SNRNP200	100	99.672	ENSCGRG00001022610	Snrnp200	100	99.672	Cricetulus_griseus_chok1gshd
ENSCPOG00000006776	SNRNP200	100	99.112	ENSCGRG00000016472	Snrnp200	100	99.112	Cricetulus_griseus_crigri
ENSCPOG00000006776	SNRNP200	100	89.841	ENSCSEG00000016399	snrnp200	100	89.841	Cynoglossus_semilaevis
ENSCPOG00000006776	SNRNP200	100	85.487	ENSCVAG00000017631	snrnp200	99	85.487	Cyprinodon_variegatus
ENSCPOG00000006776	SNRNP200	100	90.215	ENSDARG00000077536	snrnp200	99	90.215	Danio_rerio
ENSCPOG00000006776	SNRNP200	100	98.174	ENSDNOG00000011227	SNRNP200	100	98.174	Dasypus_novemcinctus
ENSCPOG00000006776	SNRNP200	100	96.961	ENSDORG00000005861	Snrnp200	100	96.961	Dipodomys_ordii
ENSCPOG00000006776	SNRNP200	100	74.255	FBgn0263599	l(3)72Ab	99	74.162	Drosophila_melanogaster
ENSCPOG00000006776	SNRNP200	95	99.311	ENSETEG00000000162	SNRNP200	74	99.311	Echinops_telfairi
ENSCPOG00000006776	SNRNP200	83	81.256	ENSEBUG00000016524	snrnp200	95	81.256	Eptatretus_burgeri
ENSCPOG00000006776	SNRNP200	100	98.648	ENSEASG00005001884	SNRNP200	100	98.648	Equus_asinus_asinus
ENSCPOG00000006776	SNRNP200	100	99.766	ENSECAG00000019675	SNRNP200	100	99.766	Equus_caballus
ENSCPOG00000006776	SNRNP200	88	100.000	ENSEEUG00000012178	SNRNP200	93	100.000	Erinaceus_europaeus
ENSCPOG00000006776	SNRNP200	99	90.700	ENSELUG00000018948	snrnp200	99	90.590	Esox_lucius
ENSCPOG00000006776	SNRNP200	100	99.719	ENSFCAG00000010699	SNRNP200	100	99.719	Felis_catus
ENSCPOG00000006776	SNRNP200	93	92.857	ENSFALG00000001368	-	95	92.857	Ficedula_albicollis
ENSCPOG00000006776	SNRNP200	100	99.813	ENSFDAG00000004683	SNRNP200	100	99.813	Fukomys_damarensis
ENSCPOG00000006776	SNRNP200	100	87.687	ENSFHEG00000003786	snrnp200	99	87.687	Fundulus_heteroclitus
ENSCPOG00000006776	SNRNP200	100	89.626	ENSGMOG00000004881	snrnp200	99	89.579	Gadus_morhua
ENSCPOG00000006776	SNRNP200	100	87.921	ENSGAFG00000010807	snrnp200	99	87.921	Gambusia_affinis
ENSCPOG00000006776	SNRNP200	100	89.865	ENSGACG00000011474	snrnp200	99	89.771	Gasterosteus_aculeatus
ENSCPOG00000006776	SNRNP200	95	97.481	ENSGAGG00000016069	SNRNP200	99	97.481	Gopherus_agassizii
ENSCPOG00000006776	SNRNP200	100	99.719	ENSGGOG00000005174	SNRNP200	100	99.719	Gorilla_gorilla
ENSCPOG00000006776	SNRNP200	97	87.620	ENSHBUG00000011322	snrnp200	99	87.667	Haplochromis_burtoni
ENSCPOG00000006776	SNRNP200	100	99.906	ENSHGLG00000006654	SNRNP200	100	99.906	Heterocephalus_glaber_female
ENSCPOG00000006776	SNRNP200	100	99.906	ENSHGLG00100018594	SNRNP200	100	99.906	Heterocephalus_glaber_male
ENSCPOG00000006776	SNRNP200	100	99.672	ENSSTOG00000016351	SNRNP200	100	99.672	Ictidomys_tridecemlineatus
ENSCPOG00000006776	SNRNP200	100	99.532	ENSJJAG00000023659	Snrnp200	100	99.532	Jaculus_jaculus
ENSCPOG00000006776	SNRNP200	100	87.401	ENSKMAG00000003665	snrnp200	99	87.401	Kryptolebias_marmoratus
ENSCPOG00000006776	SNRNP200	100	90.122	ENSLBEG00000021585	snrnp200	99	90.122	Labrus_bergylta
ENSCPOG00000006776	SNRNP200	82	94.607	ENSLACG00000000226	SNRNP200	99	94.607	Latimeria_chalumnae
ENSCPOG00000006776	SNRNP200	100	92.041	ENSLOCG00000015198	snrnp200	99	92.041	Lepisosteus_oculatus
ENSCPOG00000006776	SNRNP200	100	99.485	ENSLAFG00000015626	SNRNP200	100	99.485	Loxodonta_africana
ENSCPOG00000006776	SNRNP200	100	99.672	ENSMFAG00000040174	SNRNP200	100	99.672	Macaca_fascicularis
ENSCPOG00000006776	SNRNP200	100	99.672	ENSMMUG00000023261	SNRNP200	100	99.672	Macaca_mulatta
ENSCPOG00000006776	SNRNP200	100	99.625	ENSMNEG00000032398	SNRNP200	100	99.625	Macaca_nemestrina
ENSCPOG00000006776	SNRNP200	100	99.719	ENSMLEG00000019083	SNRNP200	100	99.719	Mandrillus_leucophaeus
ENSCPOG00000006776	SNRNP200	100	90.080	ENSMAMG00000007851	snrnp200	99	90.033	Mastacembelus_armatus
ENSCPOG00000006776	SNRNP200	97	87.620	ENSMZEG00005010787	snrnp200	99	87.667	Maylandia_zebra
ENSCPOG00000006776	SNRNP200	97	97.146	ENSMGAG00000001831	SNRNP200	100	97.146	Meleagris_gallopavo
ENSCPOG00000006776	SNRNP200	100	99.625	ENSMAUG00000011825	Snrnp200	100	99.625	Mesocricetus_auratus
ENSCPOG00000006776	SNRNP200	100	99.672	ENSMICG00000004710	SNRNP200	100	99.672	Microcebus_murinus
ENSCPOG00000006776	SNRNP200	100	97.051	ENSMOCG00000011814	Snrnp200	100	97.051	Microtus_ochrogaster
ENSCPOG00000006776	SNRNP200	99	88.868	ENSMMOG00000014167	snrnp200	99	88.764	Mola_mola
ENSCPOG00000006776	SNRNP200	100	98.830	ENSMODG00000008475	SNRNP200	100	98.830	Monodelphis_domestica
ENSCPOG00000006776	SNRNP200	99	90.653	ENSMALG00000001973	snrnp200	99	90.543	Monopterus_albus
ENSCPOG00000006776	SNRNP200	100	99.532	MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.532	Mus_caroli
ENSCPOG00000006776	SNRNP200	100	99.579	ENSMUSG00000003660	Snrnp200	100	99.579	Mus_musculus
ENSCPOG00000006776	SNRNP200	100	99.625	MGP_PahariEiJ_G0025695	Snrnp200	100	99.625	Mus_pahari
ENSCPOG00000006776	SNRNP200	100	99.579	MGP_SPRETEiJ_G0025170	Snrnp200	100	99.724	Mus_spretus
ENSCPOG00000006776	SNRNP200	100	99.625	ENSMPUG00000008949	SNRNP200	100	99.625	Mustela_putorius_furo
ENSCPOG00000006776	SNRNP200	100	95.272	ENSMLUG00000027511	-	100	95.272	Myotis_lucifugus
ENSCPOG00000006776	SNRNP200	100	98.971	ENSMLUG00000010493	SNRNP200	100	98.971	Myotis_lucifugus
ENSCPOG00000006776	SNRNP200	100	99.719	ENSNGAG00000021993	Snrnp200	100	99.719	Nannospalax_galili
ENSCPOG00000006776	SNRNP200	90	90.145	ENSNBRG00000017960	snrnp200	98	90.145	Neolamprologus_brichardi
ENSCPOG00000006776	SNRNP200	100	95.072	ENSNLEG00000000025	SNRNP200	100	95.137	Nomascus_leucogenys
ENSCPOG00000006776	SNRNP200	100	100.000	ENSMEUG00000010532	SNRNP200	79	100.000	Notamacropus_eugenii
ENSCPOG00000006776	SNRNP200	100	95.787	ENSOPRG00000015464	SNRNP200	100	95.787	Ochotona_princeps
ENSCPOG00000006776	SNRNP200	100	99.860	ENSODEG00000008366	SNRNP200	100	99.860	Octodon_degus
ENSCPOG00000006776	SNRNP200	99	90.371	ENSONIG00000010714	snrnp200	99	90.262	Oreochromis_niloticus
ENSCPOG00000006776	SNRNP200	100	99.579	ENSOCUG00000009864	SNRNP200	100	99.579	Oryctolagus_cuniculus
ENSCPOG00000006776	SNRNP200	100	90.169	ENSORLG00000012286	snrnp200	100	90.169	Oryzias_latipes
ENSCPOG00000006776	SNRNP200	100	90.215	ENSORLG00020004648	snrnp200	100	90.215	Oryzias_latipes_hni
ENSCPOG00000006776	SNRNP200	100	90.169	ENSORLG00015019114	snrnp200	100	90.185	Oryzias_latipes_hsok
ENSCPOG00000006776	SNRNP200	99	90.418	ENSOMEG00000011834	snrnp200	99	90.309	Oryzias_melastigma
ENSCPOG00000006776	SNRNP200	100	99.719	ENSOGAG00000006879	SNRNP200	100	99.719	Otolemur_garnettii
ENSCPOG00000006776	SNRNP200	100	98.362	ENSOARG00000013949	SNRNP200	100	98.362	Ovis_aries
ENSCPOG00000006776	SNRNP200	100	99.719	ENSPPAG00000041559	SNRNP200	100	99.719	Pan_paniscus
ENSCPOG00000006776	SNRNP200	100	99.719	ENSPPRG00000004435	SNRNP200	100	99.719	Panthera_pardus
ENSCPOG00000006776	SNRNP200	100	99.251	ENSPTIG00000006380	SNRNP200	100	99.251	Panthera_tigris_altaica
ENSCPOG00000006776	SNRNP200	100	99.719	ENSPTRG00000012230	SNRNP200	100	99.719	Pan_troglodytes
ENSCPOG00000006776	SNRNP200	100	99.672	ENSPANG00000006017	SNRNP200	100	99.672	Papio_anubis
ENSCPOG00000006776	SNRNP200	100	90.964	ENSPKIG00000014762	snrnp200	99	90.964	Paramormyrops_kingsleyae
ENSCPOG00000006776	SNRNP200	100	96.537	ENSPSIG00000008580	SNRNP200	100	96.537	Pelodiscus_sinensis
ENSCPOG00000006776	SNRNP200	100	98.783	ENSPCIG00000023050	SNRNP200	100	98.783	Phascolarctos_cinereus
ENSCPOG00000006776	SNRNP200	100	90.220	ENSPFOG00000015110	snrnp200	99	90.220	Poecilia_formosa
ENSCPOG00000006776	SNRNP200	97	90.055	ENSPLAG00000006711	snrnp200	99	90.055	Poecilia_latipinna
ENSCPOG00000006776	SNRNP200	97	90.000	ENSPMEG00000021166	snrnp200	99	90.000	Poecilia_mexicana
ENSCPOG00000006776	SNRNP200	100	90.309	ENSPREG00000008875	snrnp200	99	90.309	Poecilia_reticulata
ENSCPOG00000006776	SNRNP200	100	99.719	ENSPPYG00000012068	SNRNP200	100	99.719	Pongo_abelii
ENSCPOG00000006776	SNRNP200	97	97.436	ENSPCAG00000008536	SNRNP200	89	97.436	Procavia_capensis
ENSCPOG00000006776	SNRNP200	100	99.719	ENSPCOG00000024608	SNRNP200	100	99.719	Propithecus_coquereli
ENSCPOG00000006776	SNRNP200	96	100.000	ENSPVAG00000005860	SNRNP200	93	100.000	Pteropus_vampyrus
ENSCPOG00000006776	SNRNP200	99	85.855	ENSPNYG00000017476	snrnp200	99	85.761	Pundamilia_nyererei
ENSCPOG00000006776	SNRNP200	100	85.955	ENSPNAG00000010998	snrnp200	99	85.955	Pygocentrus_nattereri
ENSCPOG00000006776	SNRNP200	100	99.625	ENSRNOG00000012157	Snrnp200	100	99.625	Rattus_norvegicus
ENSCPOG00000006776	SNRNP200	100	99.719	ENSRBIG00000044690	-	100	99.719	Rhinopithecus_bieti
ENSCPOG00000006776	SNRNP200	100	99.719	ENSRROG00000037952	-	100	99.719	Rhinopithecus_roxellana
ENSCPOG00000006776	SNRNP200	100	99.672	ENSSBOG00000035471	SNRNP200	100	99.672	Saimiri_boliviensis_boliviensis
ENSCPOG00000006776	SNRNP200	97	98.694	ENSSHAG00000000758	SNRNP200	100	98.694	Sarcophilus_harrisii
ENSCPOG00000006776	SNRNP200	99	91.545	ENSSFOG00015018826	snrnp200	99	91.433	Scleropages_formosus
ENSCPOG00000006776	SNRNP200	99	90.324	ENSSMAG00000005463	snrnp200	99	90.215	Scophthalmus_maximus
ENSCPOG00000006776	SNRNP200	99	90.606	ENSSDUG00000021410	snrnp200	99	90.496	Seriola_dumerili
ENSCPOG00000006776	SNRNP200	99	90.559	ENSSLDG00000010884	snrnp200	99	90.449	Seriola_lalandi_dorsalis
ENSCPOG00000006776	SNRNP200	95	98.928	ENSSARG00000010728	SNRNP200	96	98.928	Sorex_araneus
ENSCPOG00000006776	SNRNP200	100	97.331	ENSSPUG00000003726	-	100	97.331	Sphenodon_punctatus
ENSCPOG00000006776	SNRNP200	99	90.653	ENSSPAG00000001842	snrnp200	99	90.543	Stegastes_partitus
ENSCPOG00000006776	SNRNP200	100	99.532	ENSSSCG00000008127	SNRNP200	100	99.532	Sus_scrofa
ENSCPOG00000006776	SNRNP200	99	87.914	ENSTGUG00000014475	-	100	87.914	Taeniopygia_guttata
ENSCPOG00000006776	SNRNP200	99	90.277	ENSTRUG00000001307	snrnp200	99	90.169	Takifugu_rubripes
ENSCPOG00000006776	SNRNP200	100	85.724	ENSTNIG00000004320	snrnp200	100	85.724	Tetraodon_nigroviridis
ENSCPOG00000006776	SNRNP200	82	99.495	ENSTBEG00000003329	-	67	99.495	Tupaia_belangeri
ENSCPOG00000006776	SNRNP200	100	99.345	ENSTTRG00000004983	SNRNP200	100	99.345	Tursiops_truncatus
ENSCPOG00000006776	SNRNP200	75	92.539	ENSUAMG00000008395	-	95	92.539	Ursus_americanus
ENSCPOG00000006776	SNRNP200	100	99.719	ENSUMAG00000012385	SNRNP200	100	99.719	Ursus_maritimus
ENSCPOG00000006776	SNRNP200	90	100.000	ENSVPAG00000006434	SNRNP200	69	100.000	Vicugna_pacos
ENSCPOG00000006776	SNRNP200	100	99.486	ENSVVUG00000026247	SNRNP200	100	99.486	Vulpes_vulpes
ENSCPOG00000006776	SNRNP200	100	94.203	ENSXETG00000001243	snrnp200	100	94.203	Xenopus_tropicalis
ENSCPOG00000006776	SNRNP200	97	90.310	ENSXMAG00000002058	snrnp200	98	90.310	Xiphophorus_maculatus