EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCPOG00000006824 (Gene tree)
Gene ID: 100724694
Gene Symbol: UPF3A
Alias: HUPF3A|RENT3A|UPF3
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Minus strand
Length: 22822 bases
Position: chrDS562860.1:13888364-13911185
Accession: 100724694
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000006151	Smg4_UPF3	PF03467.15	1.4e-46	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000006893	UPF3A-201	1293	XM_005007123	ENSCPOP00000006151	430 (aa)	XP_005007180	H0V8N8

Gene Model

Click here to download ENSCPOG00000006824's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000006824's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000006824	UPF3A	93	68.537	ENSG00000169062	UPF3A	99	68.269	Homo_sapiens
ENSCPOG00000006824	UPF3A	56	56.972	ENSAPOG00000012775	upf3b	54	62.550	Acanthochromis_polyacanthus
ENSCPOG00000006824	UPF3A	90	67.095	ENSAMEG00000004259	UPF3A	85	67.095	Ailuropoda_melanoleuca
ENSCPOG00000006824	UPF3A	56	56.574	ENSAOCG00000000706	upf3b	54	60.956	Amphiprion_ocellaris
ENSCPOG00000006824	UPF3A	56	57.371	ENSAPEG00000005545	upf3b	54	62.948	Amphiprion_percula
ENSCPOG00000006824	UPF3A	86	57.951	ENSATEG00000005843	upf3a	76	58.108	Anabas_testudineus
ENSCPOG00000006824	UPF3A	74	70.279	ENSACAG00000001540	UPF3A	77	70.279	Anolis_carolinensis
ENSCPOG00000006824	UPF3A	90	67.179	ENSANAG00000021713	UPF3A	82	67.179	Aotus_nancymaae
ENSCPOG00000006824	UPF3A	60	50.958	ENSANAG00000025598	-	55	53.232	Aotus_nancymaae
ENSCPOG00000006824	UPF3A	81	59.770	ENSAMXG00000002608	upf3a	74	59.770	Astyanax_mexicanus
ENSCPOG00000006824	UPF3A	55	33.721	WBGene00004882	smg-4	51	35.795	Caenorhabditis_elegans
ENSCPOG00000006824	UPF3A	85	71.003	ENSCJAG00000019102	UPF3A	83	70.000	Callithrix_jacchus
ENSCPOG00000006824	UPF3A	98	65.501	ENSCAFG00000006504	UPF3A	92	65.501	Canis_familiaris
ENSCPOG00000006824	UPF3A	98	65.734	ENSCAFG00020014268	UPF3A	90	65.734	Canis_lupus_dingo
ENSCPOG00000006824	UPF3A	96	61.151	ENSCHIG00000008682	UPF3A	83	60.859	Capra_hircus
ENSCPOG00000006824	UPF3A	70	66.337	ENSTSYG00000001918	UPF3A	79	66.337	Carlito_syrichta
ENSCPOG00000006824	UPF3A	93	68.069	ENSCCAG00000018406	UPF3A	86	68.069	Cebus_capucinus
ENSCPOG00000006824	UPF3A	93	66.829	ENSCATG00000029733	UPF3A	86	66.829	Cercocebus_atys
ENSCPOG00000006824	UPF3A	63	48.454	ENSCLAG00000003260	UPF3B	62	55.405	Chinchilla_lanigera
ENSCPOG00000006824	UPF3A	90	68.193	ENSCSAG00000017388	UPF3A	82	68.193	Chlorocebus_sabaeus
ENSCPOG00000006824	UPF3A	68	73.077	ENSCHOG00000006918	-	69	61.486	Choloepus_hoffmanni
ENSCPOG00000006824	UPF3A	90	71.134	ENSCGRG00001017387	Upf3a	89	71.134	Cricetulus_griseus_chok1gshd
ENSCPOG00000006824	UPF3A	90	70.619	ENSCGRG00000001468	Upf3a	89	70.619	Cricetulus_griseus_crigri
ENSCPOG00000006824	UPF3A	78	61.493	ENSCSEG00000005106	upf3a	75	58.904	Cynoglossus_semilaevis
ENSCPOG00000006824	UPF3A	53	61.925	ENSCSEG00000002046	upf3b	79	47.507	Cynoglossus_semilaevis
ENSCPOG00000006824	UPF3A	76	59.451	ENSCVAG00000022333	upf3a	69	59.451	Cyprinodon_variegatus
ENSCPOG00000006824	UPF3A	79	58.213	ENSDARG00000069297	upf3a	73	58.213	Danio_rerio
ENSCPOG00000006824	UPF3A	86	70.509	ENSDNOG00000034391	UPF3A	91	67.742	Dasypus_novemcinctus
ENSCPOG00000006824	UPF3A	87	60.053	ENSETEG00000010110	UPF3A	82	59.898	Echinops_telfairi
ENSCPOG00000006824	UPF3A	98	64.403	ENSEASG00005021884	UPF3A	88	64.403	Equus_asinus_asinus
ENSCPOG00000006824	UPF3A	94	63.971	ENSECAG00000017141	UPF3A	88	64.169	Equus_caballus
ENSCPOG00000006824	UPF3A	53	60.593	ENSELUG00000020389	upf3b	54	52.471	Esox_lucius
ENSCPOG00000006824	UPF3A	91	55.216	ENSELUG00000011050	upf3a	81	55.216	Esox_lucius
ENSCPOG00000006824	UPF3A	92	66.416	ENSFCAG00000014602	UPF3A	91	64.896	Felis_catus
ENSCPOG00000006824	UPF3A	57	60.236	ENSGMOG00000001621	upf3b	53	60.236	Gadus_morhua
ENSCPOG00000006824	UPF3A	75	53.541	ENSGMOG00000019615	upf3a	97	53.541	Gadus_morhua
ENSCPOG00000006824	UPF3A	77	60.177	ENSGAFG00000021170	upf3a	70	60.661	Gambusia_affinis
ENSCPOG00000006824	UPF3A	55	56.198	ENSGACG00000017435	upf3b	62	63.584	Gasterosteus_aculeatus
ENSCPOG00000006824	UPF3A	93	68.537	ENSGGOG00000015428	UPF3A	86	68.537	Gorilla_gorilla
ENSCPOG00000006824	UPF3A	78	56.891	ENSGGOG00000043074	-	65	61.682	Gorilla_gorilla
ENSCPOG00000006824	UPF3A	84	55.616	ENSGGOG00000041219	-	76	59.195	Gorilla_gorilla
ENSCPOG00000006824	UPF3A	100	81.671	ENSHGLG00000001544	UPF3A	100	81.671	Heterocephalus_glaber_female
ENSCPOG00000006824	UPF3A	100	81.671	ENSHGLG00100013244	UPF3A	100	81.671	Heterocephalus_glaber_male
ENSCPOG00000006824	UPF3A	60	59.091	ENSHCOG00000017004	upf3b	57	59.091	Hippocampus_comes
ENSCPOG00000006824	UPF3A	76	50.592	ENSHCOG00000013985	upf3a	69	71.951	Hippocampus_comes
ENSCPOG00000006824	UPF3A	79	60.767	ENSIPUG00000023450	upf3a	72	60.767	Ictalurus_punctatus
ENSCPOG00000006824	UPF3A	55	60.163	ENSIPUG00000019249	upf3b	80	41.927	Ictalurus_punctatus
ENSCPOG00000006824	UPF3A	52	73.568	ENSSTOG00000030282	-	95	73.568	Ictidomys_tridecemlineatus
ENSCPOG00000006824	UPF3A	85	57.065	ENSKMAG00000004381	upf3a	76	57.065	Kryptolebias_marmoratus
ENSCPOG00000006824	UPF3A	57	58.498	ENSLBEG00000028689	upf3b	55	54.217	Labrus_bergylta
ENSCPOG00000006824	UPF3A	50	44.444	ENSLACG00000006645	UPF3A	70	44.444	Latimeria_chalumnae
ENSCPOG00000006824	UPF3A	54	60.656	ENSLOCG00000015238	upf3b	60	54.167	Lepisosteus_oculatus
ENSCPOG00000006824	UPF3A	88	57.368	ENSLOCG00000002665	upf3a	79	57.368	Lepisosteus_oculatus
ENSCPOG00000006824	UPF3A	75	59.593	ENSLAFG00000023358	UPF3A	81	59.763	Loxodonta_africana
ENSCPOG00000006824	UPF3A	60	50.730	ENSLAFG00000001267	UPF3B	57	57.778	Loxodonta_africana
ENSCPOG00000006824	UPF3A	93	63.659	ENSMFAG00000045016	UPF3A	86	63.504	Macaca_fascicularis
ENSCPOG00000006824	UPF3A	93	64.461	ENSMMUG00000007449	UPF3A	85	64.303	Macaca_mulatta
ENSCPOG00000006824	UPF3A	92	61.985	ENSMNEG00000036402	UPF3A	82	61.836	Macaca_nemestrina
ENSCPOG00000006824	UPF3A	80	67.422	ENSMLEG00000014726	UPF3A	75	70.732	Mandrillus_leucophaeus
ENSCPOG00000006824	UPF3A	76	62.500	ENSMAMG00000018364	upf3a	66	62.500	Mastacembelus_armatus
ENSCPOG00000006824	UPF3A	70	70.588	ENSMGAG00000014837	UPF3A	76	70.588	Meleagris_gallopavo
ENSCPOG00000006824	UPF3A	60	53.933	ENSMAUG00000008705	Upf3b	63	57.895	Mesocricetus_auratus
ENSCPOG00000006824	UPF3A	73	76.997	ENSMOCG00000000550	Upf3a	88	76.997	Microtus_ochrogaster
ENSCPOG00000006824	UPF3A	76	60.976	ENSMMOG00000019751	upf3a	66	60.976	Mola_mola
ENSCPOG00000006824	UPF3A	75	74.233	ENSMODG00000003159	UPF3A	76	74.233	Monodelphis_domestica
ENSCPOG00000006824	UPF3A	90	68.814	MGP_CAROLIEiJ_G0030848	Upf3a	89	68.814	Mus_caroli
ENSCPOG00000006824	UPF3A	90	69.072	ENSMUSG00000038398	Upf3a	89	69.072	Mus_musculus
ENSCPOG00000006824	UPF3A	93	67.332	MGP_PahariEiJ_G0021311	Upf3a	89	69.072	Mus_pahari
ENSCPOG00000006824	UPF3A	90	69.072	MGP_SPRETEiJ_G0031958	Upf3a	89	69.072	Mus_spretus
ENSCPOG00000006824	UPF3A	96	66.348	ENSMPUG00000009139	UPF3A	86	66.348	Mustela_putorius_furo
ENSCPOG00000006824	UPF3A	81	66.102	ENSMLUG00000015905	UPF3A	84	66.102	Myotis_lucifugus
ENSCPOG00000006824	UPF3A	90	71.134	ENSNGAG00000019314	Upf3a	89	71.134	Nannospalax_galili
ENSCPOG00000006824	UPF3A	93	67.640	ENSNLEG00000007563	UPF3A	82	69.821	Nomascus_leucogenys
ENSCPOG00000006824	UPF3A	57	61.633	ENSOPRG00000008846	-	56	62.449	Ochotona_princeps
ENSCPOG00000006824	UPF3A	50	83.333	ENSODEG00000009176	-	86	83.333	Octodon_degus
ENSCPOG00000006824	UPF3A	76	59.821	ENSONIG00000006817	upf3a	76	55.080	Oreochromis_niloticus
ENSCPOG00000006824	UPF3A	75	62.883	ENSOANG00000006985	-	84	62.462	Ornithorhynchus_anatinus
ENSCPOG00000006824	UPF3A	88	57.143	ENSOCUG00000008450	UPF3A	78	57.289	Oryctolagus_cuniculus
ENSCPOG00000006824	UPF3A	78	59.172	ENSORLG00000010911	upf3a	70	59.172	Oryzias_latipes
ENSCPOG00000006824	UPF3A	60	48.679	ENSORLG00000001026	upf3b	59	50.368	Oryzias_latipes
ENSCPOG00000006824	UPF3A	60	49.057	ENSORLG00020003758	upf3b	52	60.927	Oryzias_latipes_hni
ENSCPOG00000006824	UPF3A	78	57.602	ENSORLG00020014317	upf3a	71	57.602	Oryzias_latipes_hni
ENSCPOG00000006824	UPF3A	60	49.057	ENSORLG00015012954	upf3b	59	50.735	Oryzias_latipes_hsok
ENSCPOG00000006824	UPF3A	55	51.452	ENSOMEG00000014736	upf3b	54	54.217	Oryzias_melastigma
ENSCPOG00000006824	UPF3A	78	58.209	ENSOMEG00000014425	upf3a	70	58.209	Oryzias_melastigma
ENSCPOG00000006824	UPF3A	95	66.747	ENSOGAG00000004788	UPF3A	100	66.747	Otolemur_garnettii
ENSCPOG00000006824	UPF3A	94	59.902	ENSOARG00000009004	UPF3A	79	62.565	Ovis_aries
ENSCPOG00000006824	UPF3A	93	67.237	ENSPPAG00000042267	UPF3A	86	67.237	Pan_paniscus
ENSCPOG00000006824	UPF3A	95	63.747	ENSPPRG00000025062	UPF3A	87	63.721	Panthera_pardus
ENSCPOG00000006824	UPF3A	79	56.977	ENSPTRG00000041835	-	75	57.184	Pan_troglodytes
ENSCPOG00000006824	UPF3A	79	57.759	ENSPTRG00000041187	-	77	57.759	Pan_troglodytes
ENSCPOG00000006824	UPF3A	84	56.438	ENSPTRG00000051640	-	80	56.438	Pan_troglodytes
ENSCPOG00000006824	UPF3A	93	67.805	ENSPTRG00000006073	UPF3A	86	67.805	Pan_troglodytes
ENSCPOG00000006824	UPF3A	93	66.993	ENSPANG00000004346	UPF3A	86	66.829	Papio_anubis
ENSCPOG00000006824	UPF3A	55	60.976	ENSPKIG00000019226	upf3b	75	64.957	Paramormyrops_kingsleyae
ENSCPOG00000006824	UPF3A	76	61.027	ENSPKIG00000004422	upf3a	71	61.610	Paramormyrops_kingsleyae
ENSCPOG00000006824	UPF3A	75	71.827	ENSPSIG00000007468	UPF3A	79	71.827	Pelodiscus_sinensis
ENSCPOG00000006824	UPF3A	60	51.698	ENSPEMG00000012352	Upf3b	65	55.414	Peromyscus_maniculatus_bairdii
ENSCPOG00000006824	UPF3A	90	70.876	ENSPEMG00000019968	-	89	70.876	Peromyscus_maniculatus_bairdii
ENSCPOG00000006824	UPF3A	72	66.667	ENSPCIG00000019590	-	90	70.616	Phascolarctos_cinereus
ENSCPOG00000006824	UPF3A	77	61.562	ENSPFOG00000013222	upf3a	70	61.562	Poecilia_formosa
ENSCPOG00000006824	UPF3A	77	59.459	ENSPLAG00000011960	upf3a	66	71.053	Poecilia_latipinna
ENSCPOG00000006824	UPF3A	93	68.049	ENSPPYG00000005536	UPF3A	86	68.049	Pongo_abelii
ENSCPOG00000006824	UPF3A	77	63.127	ENSPCAG00000013124	UPF3A	70	63.127	Procavia_capensis
ENSCPOG00000006824	UPF3A	98	62.763	ENSPVAG00000005656	UPF3A	89	62.763	Pteropus_vampyrus
ENSCPOG00000006824	UPF3A	55	55.785	ENSPNAG00000021528	upf3b	55	63.030	Pygocentrus_nattereri
ENSCPOG00000006824	UPF3A	79	61.062	ENSPNAG00000019532	upf3a	72	61.062	Pygocentrus_nattereri
ENSCPOG00000006824	UPF3A	97	66.826	ENSRNOG00000017397	Upf3a	100	66.826	Rattus_norvegicus
ENSCPOG00000006824	UPF3A	80	67.898	ENSRBIG00000034007	UPF3A	80	66.758	Rhinopithecus_bieti
ENSCPOG00000006824	UPF3A	78	68.622	ENSRROG00000012212	UPF3A	71	68.622	Rhinopithecus_roxellana
ENSCPOG00000006824	UPF3A	90	61.026	ENSSBOG00000029989	UPF3A	80	61.026	Saimiri_boliviensis_boliviensis
ENSCPOG00000006824	UPF3A	77	73.353	ENSSHAG00000009895	UPF3A	79	73.353	Sarcophilus_harrisii
ENSCPOG00000006824	UPF3A	62	53.676	ENSSFOG00015005614	upf3b	60	52.941	Scleropages_formosus
ENSCPOG00000006824	UPF3A	85	55.285	ENSSFOG00015021851	upf3a	76	55.285	Scleropages_formosus
ENSCPOG00000006824	UPF3A	57	60.156	ENSSMAG00000012913	upf3b	55	63.584	Scophthalmus_maximus
ENSCPOG00000006824	UPF3A	76	50.000	ENSSDUG00000009680	upf3a	67	74.312	Seriola_dumerili
ENSCPOG00000006824	UPF3A	81	57.307	ENSSARG00000007262	UPF3A	85	55.301	Sorex_araneus
ENSCPOG00000006824	UPF3A	56	61.847	ENSSPAG00000009989	upf3b	55	62.353	Stegastes_partitus
ENSCPOG00000006824	UPF3A	60	50.943	ENSSSCG00000012617	UPF3B	56	58.364	Sus_scrofa
ENSCPOG00000006824	UPF3A	97	63.962	ENSSSCG00000024679	UPF3A	80	71.254	Sus_scrofa
ENSCPOG00000006824	UPF3A	77	71.045	ENSTGUG00000009493	UPF3A	85	71.045	Taeniopygia_guttata
ENSCPOG00000006824	UPF3A	79	58.601	ENSTRUG00000012730	upf3a	72	58.309	Takifugu_rubripes
ENSCPOG00000006824	UPF3A	80	49.568	ENSTNIG00000014973	upf3a	87	49.856	Tetraodon_nigroviridis
ENSCPOG00000006824	UPF3A	68	59.459	ENSTBEG00000017186	-	93	59.459	Tupaia_belangeri
ENSCPOG00000006824	UPF3A	99	54.607	ENSTTRG00000015414	UPF3A	93	54.607	Tursiops_truncatus
ENSCPOG00000006824	UPF3A	79	68.035	ENSVPAG00000003525	UPF3A	85	68.035	Vicugna_pacos
ENSCPOG00000006824	UPF3A	96	64.115	ENSVVUG00000013538	UPF3A	84	64.115	Vulpes_vulpes
ENSCPOG00000006824	UPF3A	78	53.509	ENSXETG00000002572	upf3a	78	53.116	Xenopus_tropicalis
ENSCPOG00000006824	UPF3A	75	47.478	ENSXETG00000007440	upf3b	72	65.868	Xenopus_tropicalis
ENSCPOG00000006824	UPF3A	55	49.794	ENSXMAG00000013680	upf3b	55	49.200	Xiphophorus_maculatus
ENSCPOG00000006824	UPF3A	77	60.661	ENSXMAG00000013452	upf3a	70	60.661	Xiphophorus_maculatus