EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPOG00000007421 (Gene tree)
Gene ID: 100718544
Gene Symbol: HFM1
Alias: FLJ36760|FLJ39011|MER3|SEC63D1
Full Name: HFM1%2C ATP dependent DNA helicase homolog
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Minus strand
Length: 83150 bases
Position: chrDS562857.1:17270555-17353704
Accession: 100718544
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000006694	ResIII	PF04851.15	2e-11	1	1
ENSCPOP00000006694	DEAD	PF00270.29	2e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000007493	HFM1-201	4203	XM_003478930	ENSCPOP00000006694	1400 (aa)	-	H0VA28

Gene Model

Click here to download ENSCPOG00000007421's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000007421's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPOG00000007421	HFM1	56	32.371	ENSCPOG00000006776	SNRNP200	66	32.371

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000007421	HFM1	99	78.984	ENSG00000162669	HFM1	99	78.984	Homo_sapiens
ENSCPOG00000007421	HFM1	60	65.550	ENSAPOG00000005304	hfm1	94	65.550	Acanthochromis_polyacanthus
ENSCPOG00000007421	HFM1	99	79.555	ENSAMEG00000000432	HFM1	99	79.555	Ailuropoda_melanoleuca
ENSCPOG00000007421	HFM1	72	59.496	ENSACIG00000021553	hfm1	91	59.496	Amphilophus_citrinellus
ENSCPOG00000007421	HFM1	60	65.588	ENSAOCG00000022839	hfm1	96	67.803	Amphiprion_ocellaris
ENSCPOG00000007421	HFM1	60	65.348	ENSAPEG00000014316	hfm1	96	67.975	Amphiprion_percula
ENSCPOG00000007421	HFM1	68	63.223	ENSATEG00000019181	hfm1	80	62.295	Anabas_testudineus
ENSCPOG00000007421	HFM1	99	58.607	ENSAPLG00000013639	HFM1	99	58.607	Anas_platyrhynchos
ENSCPOG00000007421	HFM1	99	76.618	ENSANAG00000029513	HFM1	99	76.618	Aotus_nancymaae
ENSCPOG00000007421	HFM1	66	63.558	ENSACLG00000009033	hfm1	97	64.720	Astatotilapia_calliptera
ENSCPOG00000007421	HFM1	68	65.436	ENSAMXG00000006108	hfm1	67	65.436	Astyanax_mexicanus
ENSCPOG00000007421	HFM1	99	78.234	ENSBTAG00000020856	HFM1	99	78.234	Bos_taurus
ENSCPOG00000007421	HFM1	99	77.561	ENSCJAG00000001843	HFM1	99	77.561	Callithrix_jacchus
ENSCPOG00000007421	HFM1	99	79.083	ENSCAFG00000020187	HFM1	99	79.083	Canis_familiaris
ENSCPOG00000007421	HFM1	99	78.312	ENSTSYG00000014250	HFM1	99	78.312	Carlito_syrichta
ENSCPOG00000007421	HFM1	99	77.561	ENSCCAG00000033206	HFM1	99	77.561	Cebus_capucinus
ENSCPOG00000007421	HFM1	99	78.427	ENSCATG00000030987	HFM1	99	78.427	Cercocebus_atys
ENSCPOG00000007421	HFM1	99	85.095	ENSCLAG00000005173	HFM1	99	85.095	Chinchilla_lanigera
ENSCPOG00000007421	HFM1	67	90.789	ENSCHOG00000011824	-	77	90.789	Choloepus_hoffmanni
ENSCPOG00000007421	HFM1	50	53.621	ENSCSAVG00000005094	-	100	53.621	Ciona_savignyi
ENSCPOG00000007421	HFM1	99	70.250	ENSCGRG00001016995	Hfm1	99	70.250	Cricetulus_griseus_chok1gshd
ENSCPOG00000007421	HFM1	99	74.234	ENSCGRG00000017181	Hfm1	99	74.234	Cricetulus_griseus_crigri
ENSCPOG00000007421	HFM1	73	59.429	ENSCSEG00000017659	hfm1	94	59.164	Cynoglossus_semilaevis
ENSCPOG00000007421	HFM1	51	68.303	ENSCVAG00000005075	hfm1	86	68.303	Cyprinodon_variegatus
ENSCPOG00000007421	HFM1	79	54.807	ENSDARG00000104288	hfm1	97	54.717	Danio_rerio
ENSCPOG00000007421	HFM1	99	74.039	ENSDNOG00000004776	HFM1	99	74.039	Dasypus_novemcinctus
ENSCPOG00000007421	HFM1	99	74.535	ENSDORG00000014661	Hfm1	99	74.535	Dipodomys_ordii
ENSCPOG00000007421	HFM1	73	82.444	ENSEASG00005015424	HFM1	99	82.444	Equus_asinus_asinus
ENSCPOG00000007421	HFM1	99	76.617	ENSECAG00000024039	HFM1	99	76.617	Equus_caballus
ENSCPOG00000007421	HFM1	64	67.143	ENSELUG00000018944	hfm1	97	67.143	Esox_lucius
ENSCPOG00000007421	HFM1	99	79.778	ENSFCAG00000029116	HFM1	99	79.778	Felis_catus
ENSCPOG00000007421	HFM1	99	58.555	ENSFALG00000001781	HFM1	99	59.025	Ficedula_albicollis
ENSCPOG00000007421	HFM1	99	81.898	ENSFDAG00000020816	HFM1	99	81.898	Fukomys_damarensis
ENSCPOG00000007421	HFM1	68	60.271	ENSGMOG00000017436	hfm1	100	60.271	Gadus_morhua
ENSCPOG00000007421	HFM1	73	60.135	ENSGAFG00000018093	hfm1	94	65.591	Gambusia_affinis
ENSCPOG00000007421	HFM1	68	60.892	ENSGACG00000015686	hfm1	100	60.892	Gasterosteus_aculeatus
ENSCPOG00000007421	HFM1	99	79.123	ENSGGOG00000038524	HFM1	99	79.123	Gorilla_gorilla
ENSCPOG00000007421	HFM1	66	64.530	ENSHBUG00000007309	hfm1	97	59.249	Haplochromis_burtoni
ENSCPOG00000007421	HFM1	58	63.838	ENSHCOG00000019632	hfm1	97	63.838	Hippocampus_comes
ENSCPOG00000007421	HFM1	74	61.708	ENSIPUG00000017020	hfm1	92	65.955	Ictalurus_punctatus
ENSCPOG00000007421	HFM1	99	76.059	ENSJJAG00000017198	Hfm1	99	76.059	Jaculus_jaculus
ENSCPOG00000007421	HFM1	64	61.973	ENSKMAG00000002282	hfm1	91	61.973	Kryptolebias_marmoratus
ENSCPOG00000007421	HFM1	73	59.238	ENSLBEG00000006759	hfm1	97	64.405	Labrus_bergylta
ENSCPOG00000007421	HFM1	72	66.226	ENSLACG00000010698	HFM1	100	66.321	Latimeria_chalumnae
ENSCPOG00000007421	HFM1	74	63.992	ENSLOCG00000004931	hfm1	96	64.218	Lepisosteus_oculatus
ENSCPOG00000007421	HFM1	53	86.156	ENSLAFG00000015903	-	100	86.156	Loxodonta_africana
ENSCPOG00000007421	HFM1	99	75.798	ENSMFAG00000003649	HFM1	99	75.798	Macaca_fascicularis
ENSCPOG00000007421	HFM1	99	78.149	ENSMMUG00000006819	HFM1	99	78.149	Macaca_mulatta
ENSCPOG00000007421	HFM1	56	69.409	ENSMAMG00000004623	hfm1	97	65.538	Mastacembelus_armatus
ENSCPOG00000007421	HFM1	66	63.558	ENSMZEG00005004679	hfm1	97	64.720	Maylandia_zebra
ENSCPOG00000007421	HFM1	56	76.569	ENSMGAG00000008437	HFM1	97	76.569	Meleagris_gallopavo
ENSCPOG00000007421	HFM1	99	73.556	ENSMAUG00000018858	Hfm1	99	73.556	Mesocricetus_auratus
ENSCPOG00000007421	HFM1	99	78.860	ENSMICG00000037935	HFM1	99	78.860	Microcebus_murinus
ENSCPOG00000007421	HFM1	99	72.892	ENSMOCG00000014812	Hfm1	99	72.892	Microtus_ochrogaster
ENSCPOG00000007421	HFM1	64	63.341	ENSMMOG00000006148	hfm1	95	64.186	Mola_mola
ENSCPOG00000007421	HFM1	66	63.169	ENSMALG00000002401	hfm1	94	65.584	Monopterus_albus
ENSCPOG00000007421	HFM1	94	68.874	MGP_CAROLIEiJ_G0027496	Hfm1	99	68.874	Mus_caroli
ENSCPOG00000007421	HFM1	99	73.937	ENSMUSG00000043410	Hfm1	99	73.937	Mus_musculus
ENSCPOG00000007421	HFM1	99	73.240	MGP_PahariEiJ_G0017268	Hfm1	99	73.240	Mus_pahari
ENSCPOG00000007421	HFM1	99	73.519	MGP_SPRETEiJ_G0028495	Hfm1	99	73.519	Mus_spretus
ENSCPOG00000007421	HFM1	99	75.809	ENSMPUG00000004594	HFM1	99	75.809	Mustela_putorius_furo
ENSCPOG00000007421	HFM1	99	76.540	ENSMLUG00000010200	HFM1	99	76.540	Myotis_lucifugus
ENSCPOG00000007421	HFM1	70	58.477	ENSNBRG00000002910	hfm1	97	65.212	Neolamprologus_brichardi
ENSCPOG00000007421	HFM1	99	75.330	ENSNLEG00000010285	HFM1	99	75.330	Nomascus_leucogenys
ENSCPOG00000007421	HFM1	85	62.931	ENSMEUG00000015788	HFM1	84	62.931	Notamacropus_eugenii
ENSCPOG00000007421	HFM1	84	75.726	ENSOPRG00000013916	HFM1	84	75.726	Ochotona_princeps
ENSCPOG00000007421	HFM1	73	60.840	ENSONIG00000010590	hfm1	99	60.812	Oreochromis_niloticus
ENSCPOG00000007421	HFM1	58	64.901	ENSORLG00000026844	hfm1	99	64.901	Oryzias_latipes
ENSCPOG00000007421	HFM1	69	56.122	ENSORLG00020002951	hfm1	78	55.939	Oryzias_latipes_hni
ENSCPOG00000007421	HFM1	69	62.041	ENSOMEG00000016474	hfm1	68	62.041	Oryzias_melastigma
ENSCPOG00000007421	HFM1	87	82.587	ENSOGAG00000032369	HFM1	100	82.587	Otolemur_garnettii
ENSCPOG00000007421	HFM1	99	77.832	ENSOARG00000015812	HFM1	99	77.832	Ovis_aries
ENSCPOG00000007421	HFM1	94	81.339	ENSPPAG00000024582	HFM1	99	81.339	Pan_paniscus
ENSCPOG00000007421	HFM1	99	79.778	ENSPPRG00000003270	HFM1	99	79.778	Panthera_pardus
ENSCPOG00000007421	HFM1	99	79.569	ENSPTIG00000018881	HFM1	99	79.569	Panthera_tigris_altaica
ENSCPOG00000007421	HFM1	99	78.984	ENSPTRG00000000948	HFM1	99	78.984	Pan_troglodytes
ENSCPOG00000007421	HFM1	99	78.288	ENSPANG00000009838	HFM1	99	78.288	Papio_anubis
ENSCPOG00000007421	HFM1	64	67.753	ENSPKIG00000003810	hfm1	95	67.995	Paramormyrops_kingsleyae
ENSCPOG00000007421	HFM1	59	65.375	ENSPMGG00000011059	hfm1	99	65.375	Periophthalmus_magnuspinnatus
ENSCPOG00000007421	HFM1	99	74.774	ENSPEMG00000022852	Hfm1	99	74.774	Peromyscus_maniculatus_bairdii
ENSCPOG00000007421	HFM1	99	63.098	ENSPCIG00000014233	HFM1	99	63.098	Phascolarctos_cinereus
ENSCPOG00000007421	HFM1	72	61.312	ENSPFOG00000017194	hfm1	100	61.312	Poecilia_formosa
ENSCPOG00000007421	HFM1	73	62.089	ENSPLAG00000000571	hfm1	92	62.089	Poecilia_latipinna
ENSCPOG00000007421	HFM1	73	61.992	ENSPMEG00000019475	hfm1	93	61.992	Poecilia_mexicana
ENSCPOG00000007421	HFM1	73	61.667	ENSPREG00000007803	hfm1	94	65.431	Poecilia_reticulata
ENSCPOG00000007421	HFM1	99	78.706	ENSPPYG00000001163	HFM1	99	78.706	Pongo_abelii
ENSCPOG00000007421	HFM1	71	76.271	ENSPCAG00000004289	-	70	75.000	Procavia_capensis
ENSCPOG00000007421	HFM1	99	71.268	ENSPVAG00000009713	HFM1	99	71.338	Pteropus_vampyrus
ENSCPOG00000007421	HFM1	66	63.451	ENSPNYG00000001795	hfm1	97	64.720	Pundamilia_nyererei
ENSCPOG00000007421	HFM1	60	67.453	ENSPNAG00000010865	hfm1	84	67.453	Pygocentrus_nattereri
ENSCPOG00000007421	HFM1	99	72.683	ENSRNOG00000023299	Hfm1	99	72.683	Rattus_norvegicus
ENSCPOG00000007421	HFM1	99	78.288	ENSRROG00000045569	HFM1	99	78.288	Rhinopithecus_roxellana
ENSCPOG00000007421	HFM1	99	75.860	ENSSBOG00000027456	HFM1	99	75.860	Saimiri_boliviensis_boliviensis
ENSCPOG00000007421	HFM1	61	69.017	ENSSHAG00000014616	-	98	69.017	Sarcophilus_harrisii
ENSCPOG00000007421	HFM1	87	55.943	ENSSFOG00015020129	hfm1	82	55.775	Scleropages_formosus
ENSCPOG00000007421	HFM1	64	64.653	ENSSMAG00000006907	hfm1	86	64.653	Scophthalmus_maximus
ENSCPOG00000007421	HFM1	59	65.375	ENSSDUG00000011424	hfm1	93	65.375	Seriola_dumerili
ENSCPOG00000007421	HFM1	59	65.422	ENSSLDG00000016386	hfm1	92	65.422	Seriola_lalandi_dorsalis
ENSCPOG00000007421	HFM1	70	57.937	ENSSPAG00000001023	hfm1	94	66.067	Stegastes_partitus
ENSCPOG00000007421	HFM1	99	75.185	ENSSSCG00000006912	HFM1	99	77.892	Sus_scrofa
ENSCPOG00000007421	HFM1	68	74.817	ENSTGUG00000006172	HFM1	100	74.817	Taeniopygia_guttata
ENSCPOG00000007421	HFM1	99	77.053	ENSTTRG00000013933	HFM1	99	77.053	Tursiops_truncatus
ENSCPOG00000007421	HFM1	93	77.630	ENSVPAG00000011331	HFM1	92	77.551	Vicugna_pacos
ENSCPOG00000007421	HFM1	72	82.081	ENSVVUG00000020760	HFM1	100	82.081	Vulpes_vulpes
ENSCPOG00000007421	HFM1	60	66.307	ENSXMAG00000004178	hfm1	93	66.307	Xiphophorus_maculatus