EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPOG00000008109 (Gene tree)
Gene ID: 100721666
Gene Symbol: SBNO1
Alias: FLJ10701|FLJ10833|MOP3|Sno
Full Name: strawberry notch homolog 1
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Plus strand
Length: 59338 bases
Position: chrDS562970.1:365626-424963
Accession: 100721666
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000023070	ResIII	PF04851.15	6.9e-08	1	1
ENSCPOP00000007292	ResIII	PF04851.15	8.1e-08	1	1
ENSCPOP00000027945	ResIII	PF04851.15	8.1e-08	1	1
ENSCPOP00000029931	ResIII	PF04851.15	8.1e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000039868	SBNO1-203	7281	XM_013144742	ENSCPOP00000027945	1391 (aa)	XP_013000196	H0VBK9
ENSCPOT00000043270	SBNO1-201	4730	XM_003462908	ENSCPOP00000029931	1391 (aa)	XP_003462956	H0VBK9
ENSCPOT00000040605	SBNO1-204	3810	-	ENSCPOP00000023070	1269 (aa)	-	A0A286XCD8
ENSCPOT00000008184	SBNO1-202	4325	XM_005000441	ENSCPOP00000007292	1391 (aa)	XP_005000498	H0VBK9

Gene Model

Click here to download ENSCPOG00000008109's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000008109's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPOG00000008109	SBNO1	83	57.573	ENSCPOG00000007477	SBNO2	71	68.481

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000008109	SBNO1	99	99.277	ENSG00000139697	SBNO1	100	96.911	Homo_sapiens
ENSCPOG00000008109	SBNO1	84	83.393	ENSAPOG00000003196	sbno1	98	80.911	Acanthochromis_polyacanthus
ENSCPOG00000008109	SBNO1	100	98.221	ENSAMEG00000015151	SBNO1	100	97.206	Ailuropoda_melanoleuca
ENSCPOG00000008109	SBNO1	99	82.105	ENSACIG00000008088	sbno1	95	82.105	Amphilophus_citrinellus
ENSCPOG00000008109	SBNO1	99	82.679	ENSAOCG00000014859	sbno1	94	82.679	Amphiprion_ocellaris
ENSCPOG00000008109	SBNO1	99	82.679	ENSAPEG00000006069	sbno1	94	82.679	Amphiprion_percula
ENSCPOG00000008109	SBNO1	99	84.991	ENSATEG00000006667	sbno1	95	84.991	Anabas_testudineus
ENSCPOG00000008109	SBNO1	99	94.756	ENSAPLG00000015674	SBNO1	100	91.810	Anas_platyrhynchos
ENSCPOG00000008109	SBNO1	100	93.548	ENSACAG00000015441	SBNO1	84	93.885	Anolis_carolinensis
ENSCPOG00000008109	SBNO1	100	97.865	ENSANAG00000029958	-	99	98.734	Aotus_nancymaae
ENSCPOG00000008109	SBNO1	99	74.425	ENSACLG00000024913	sbno1	99	74.767	Astatotilapia_calliptera
ENSCPOG00000008109	SBNO1	99	87.027	ENSAMXG00000019473	sbno1	95	87.027	Astyanax_mexicanus
ENSCPOG00000008109	SBNO1	99	97.861	ENSBTAG00000020505	SBNO1	99	97.486	Bos_taurus
ENSCPOG00000008109	SBNO1	99	99.096	ENSCJAG00000016599	SBNO1	100	96.770	Callithrix_jacchus
ENSCPOG00000008109	SBNO1	99	98.919	ENSCAFG00000007503	SBNO1	100	97.276	Canis_familiaris
ENSCPOG00000008109	SBNO1	100	97.402	ENSCAFG00020015363	SBNO1	100	97.402	Canis_lupus_dingo
ENSCPOG00000008109	SBNO1	99	98.732	ENSCHIG00000008382	SBNO1	99	98.732	Capra_hircus
ENSCPOG00000008109	SBNO1	99	99.458	ENSTSYG00000012749	SBNO1	100	97.272	Carlito_syrichta
ENSCPOG00000008109	SBNO1	97	100.000	ENSCAPG00000000384	SBNO1	100	99.925	Cavia_aperea
ENSCPOG00000008109	SBNO1	100	94.005	ENSCCAG00000035316	SBNO1	100	92.919	Cebus_capucinus
ENSCPOG00000008109	SBNO1	97	99.277	ENSCATG00000008239	SBNO1	98	99.277	Cercocebus_atys
ENSCPOG00000008109	SBNO1	100	99.640	ENSCLAG00000008995	SBNO1	100	99.640	Chinchilla_lanigera
ENSCPOG00000008109	SBNO1	84	98.043	ENSCSAG00000002064	SBNO1	100	98.100	Chlorocebus_sabaeus
ENSCPOG00000008109	SBNO1	95	99.024	ENSCHOG00000008814	SBNO1	91	99.024	Choloepus_hoffmanni
ENSCPOG00000008109	SBNO1	100	94.624	ENSCPBG00000025968	SBNO1	99	91.744	Chrysemys_picta_bellii
ENSCPOG00000008109	SBNO1	100	91.535	ENSCANG00000042688	-	100	91.463	Colobus_angolensis_palliatus
ENSCPOG00000008109	SBNO1	100	97.323	ENSCGRG00001017470	Sbno1	100	97.323	Cricetulus_griseus_chok1gshd
ENSCPOG00000008109	SBNO1	100	97.323	ENSCGRG00000004756	Sbno1	100	97.323	Cricetulus_griseus_crigri
ENSCPOG00000008109	SBNO1	99	83.363	ENSCSEG00000011919	sbno1	95	83.363	Cynoglossus_semilaevis
ENSCPOG00000008109	SBNO1	99	83.303	ENSCVAG00000007038	sbno1	95	83.303	Cyprinodon_variegatus
ENSCPOG00000008109	SBNO1	99	86.438	ENSDARG00000099080	sbno1	95	86.438	Danio_rerio
ENSCPOG00000008109	SBNO1	100	94.607	ENSDNOG00000017147	SBNO1	98	96.711	Dasypus_novemcinctus
ENSCPOG00000008109	SBNO1	100	97.865	ENSDORG00000015261	Sbno1	99	96.835	Dipodomys_ordii
ENSCPOG00000008109	SBNO1	92	99.275	ENSETEG00000005620	SBNO1	88	98.582	Echinops_telfairi
ENSCPOG00000008109	SBNO1	72	84.729	ENSEBUG00000013823	sbno1	85	84.729	Eptatretus_burgeri
ENSCPOG00000008109	SBNO1	54	95.906	ENSEASG00005012595	-	91	97.459	Equus_asinus_asinus
ENSCPOG00000008109	SBNO1	100	98.399	ENSECAG00000006127	SBNO1	100	97.631	Equus_caballus
ENSCPOG00000008109	SBNO1	83	99.451	ENSEEUG00000003793	SBNO1	83	99.451	Erinaceus_europaeus
ENSCPOG00000008109	SBNO1	99	86.667	ENSELUG00000002886	sbno1	95	86.667	Esox_lucius
ENSCPOG00000008109	SBNO1	99	98.396	ENSFCAG00000015331	SBNO1	99	97.629	Felis_catus
ENSCPOG00000008109	SBNO1	99	94.937	ENSFALG00000009273	SBNO1	100	91.744	Ficedula_albicollis
ENSCPOG00000008109	SBNO1	99	96.619	ENSFDAG00000014232	SBNO1	99	96.619	Fukomys_damarensis
ENSCPOG00000008109	SBNO1	99	83.483	ENSFHEG00000007360	sbno1	95	83.483	Fundulus_heteroclitus
ENSCPOG00000008109	SBNO1	96	84.404	ENSGMOG00000018229	sbno1	94	84.404	Gadus_morhua
ENSCPOG00000008109	SBNO1	87	96.447	ENSGALG00000003392	SBNO1	99	91.870	Gallus_gallus
ENSCPOG00000008109	SBNO1	99	83.662	ENSGAFG00000003960	sbno1	95	83.662	Gambusia_affinis
ENSCPOG00000008109	SBNO1	96	84.672	ENSGACG00000015633	sbno1	94	84.672	Gasterosteus_aculeatus
ENSCPOG00000008109	SBNO1	100	94.803	ENSGAGG00000001065	SBNO1	99	95.118	Gopherus_agassizii
ENSCPOG00000008109	SBNO1	100	98.399	ENSGGOG00000015000	SBNO1	100	99.281	Gorilla_gorilla
ENSCPOG00000008109	SBNO1	99	68.741	ENSHBUG00000011910	sbno1	99	69.094	Haplochromis_burtoni
ENSCPOG00000008109	SBNO1	100	99.640	ENSHGLG00000014165	-	99	99.638	Heterocephalus_glaber_female
ENSCPOG00000008109	SBNO1	91	85.178	ENSHCOG00000003246	sbno1	95	85.178	Hippocampus_comes
ENSCPOG00000008109	SBNO1	99	86.151	ENSIPUG00000015830	Sbno1	93	89.516	Ictalurus_punctatus
ENSCPOG00000008109	SBNO1	100	98.399	ENSSTOG00000023221	SBNO1	99	99.458	Ictidomys_tridecemlineatus
ENSCPOG00000008109	SBNO1	100	97.865	ENSJJAG00000001741	Sbno1	100	96.913	Jaculus_jaculus
ENSCPOG00000008109	SBNO1	99	84.545	ENSKMAG00000009696	sbno1	95	84.545	Kryptolebias_marmoratus
ENSCPOG00000008109	SBNO1	99	85.533	ENSLBEG00000007623	sbno1	95	85.533	Labrus_bergylta
ENSCPOG00000008109	SBNO1	99	81.916	ENSLACG00000017227	SBNO1	93	90.885	Latimeria_chalumnae
ENSCPOG00000008109	SBNO1	99	88.669	ENSLOCG00000005725	sbno1	95	88.669	Lepisosteus_oculatus
ENSCPOG00000008109	SBNO1	99	98.373	ENSLAFG00000002135	SBNO1	100	96.554	Loxodonta_africana
ENSCPOG00000008109	SBNO1	100	98.221	ENSMFAG00000031429	SBNO1	100	96.698	Macaca_fascicularis
ENSCPOG00000008109	SBNO1	100	98.221	ENSMMUG00000011496	SBNO1	100	96.767	Macaca_mulatta
ENSCPOG00000008109	SBNO1	99	99.277	ENSMLEG00000033260	SBNO1	99	99.277	Mandrillus_leucophaeus
ENSCPOG00000008109	SBNO1	99	85.172	ENSMAMG00000005473	sbno1	95	85.172	Mastacembelus_armatus
ENSCPOG00000008109	SBNO1	99	95.118	ENSMGAG00000003274	SBNO1	100	91.810	Meleagris_gallopavo
ENSCPOG00000008109	SBNO1	52	97.273	ENSMAUG00000004834	-	99	97.273	Mesocricetus_auratus
ENSCPOG00000008109	SBNO1	100	96.401	ENSMICG00000006573	-	100	96.401	Microcebus_murinus
ENSCPOG00000008109	SBNO1	100	97.480	ENSMOCG00000009390	Sbno1	100	97.480	Microtus_ochrogaster
ENSCPOG00000008109	SBNO1	99	84.107	ENSMMOG00000008691	sbno1	94	84.107	Mola_mola
ENSCPOG00000008109	SBNO1	99	97.101	ENSMODG00000012470	SBNO1	98	94.109	Monodelphis_domestica
ENSCPOG00000008109	SBNO1	99	83.485	ENSMALG00000001056	sbno1	95	83.485	Monopterus_albus
ENSCPOG00000008109	SBNO1	99	99.094	MGP_CAROLIEiJ_G0027749	Sbno1	99	96.974	Mus_caroli
ENSCPOG00000008109	SBNO1	99	99.094	ENSMUSG00000038095	Sbno1	99	97.277	Mus_musculus
ENSCPOG00000008109	SBNO1	99	98.564	MGP_PahariEiJ_G0024329	Sbno1	99	96.974	Mus_pahari
ENSCPOG00000008109	SBNO1	99	99.094	MGP_SPRETEiJ_G0028747	Sbno1	99	97.277	Mus_spretus
ENSCPOG00000008109	SBNO1	100	98.399	ENSMPUG00000001658	SBNO1	100	97.487	Mustela_putorius_furo
ENSCPOG00000008109	SBNO1	99	98.553	ENSMLUG00000017159	SBNO1	100	96.913	Myotis_lucifugus
ENSCPOG00000008109	SBNO1	99	99.096	ENSNGAG00000012620	Sbno1	98	99.211	Nannospalax_galili
ENSCPOG00000008109	SBNO1	99	74.228	ENSNBRG00000019189	sbno1	99	74.427	Neolamprologus_brichardi
ENSCPOG00000008109	SBNO1	100	93.869	ENSNLEG00000001502	SBNO1	100	93.386	Nomascus_leucogenys
ENSCPOG00000008109	SBNO1	60	95.699	ENSMEUG00000008768	-	86	93.814	Notamacropus_eugenii
ENSCPOG00000008109	SBNO1	99	97.473	ENSOPRG00000011054	SBNO1	100	93.759	Ochotona_princeps
ENSCPOG00000008109	SBNO1	100	99.640	ENSODEG00000009997	SBNO1	100	98.818	Octodon_degus
ENSCPOG00000008109	SBNO1	99	83.574	ENSONIG00000015348	sbno1	99	75.421	Oreochromis_niloticus
ENSCPOG00000008109	SBNO1	98	96.045	ENSOCUG00000002441	SBNO1	95	95.547	Oryctolagus_cuniculus
ENSCPOG00000008109	SBNO1	99	83.002	ENSORLG00000001593	sbno1	95	83.002	Oryzias_latipes
ENSCPOG00000008109	SBNO1	99	83.002	ENSORLG00020015216	sbno1	95	83.002	Oryzias_latipes_hni
ENSCPOG00000008109	SBNO1	99	83.183	ENSORLG00015002726	sbno1	95	83.183	Oryzias_latipes_hsok
ENSCPOG00000008109	SBNO1	99	83.303	ENSOMEG00000019313	sbno1	99	75.599	Oryzias_melastigma
ENSCPOG00000008109	SBNO1	52	94.251	ENSOGAG00000010781	-	99	94.251	Otolemur_garnettii
ENSCPOG00000008109	SBNO1	99	98.732	ENSOARG00000004404	SBNO1	99	97.272	Ovis_aries
ENSCPOG00000008109	SBNO1	100	98.221	ENSPPAG00000024635	SBNO1	99	99.096	Pan_paniscus
ENSCPOG00000008109	SBNO1	99	98.396	ENSPPRG00000022092	SBNO1	99	97.629	Panthera_pardus
ENSCPOG00000008109	SBNO1	100	98.399	ENSPTIG00000017803	SBNO1	100	97.487	Panthera_tigris_altaica
ENSCPOG00000008109	SBNO1	100	98.399	ENSPTRG00000005597	SBNO1	99	99.277	Pan_troglodytes
ENSCPOG00000008109	SBNO1	99	99.277	ENSPANG00000011640	SBNO1	99	99.277	Papio_anubis
ENSCPOG00000008109	SBNO1	99	86.486	ENSPKIG00000001441	sbno1	95	86.486	Paramormyrops_kingsleyae
ENSCPOG00000008109	SBNO1	91	91.216	ENSPSIG00000009256	-	100	87.714	Pelodiscus_sinensis
ENSCPOG00000008109	SBNO1	99	94.424	ENSPSIG00000009572	-	100	91.345	Pelodiscus_sinensis
ENSCPOG00000008109	SBNO1	100	97.165	ENSPEMG00000016087	Sbno1	100	97.165	Peromyscus_maniculatus_bairdii
ENSCPOG00000008109	SBNO1	99	96.739	ENSPCIG00000010985	SBNO1	99	93.683	Phascolarctos_cinereus
ENSCPOG00000008109	SBNO1	99	83.662	ENSPFOG00000005069	sbno1	95	83.662	Poecilia_formosa
ENSCPOG00000008109	SBNO1	99	83.662	ENSPLAG00000015015	sbno1	95	83.662	Poecilia_latipinna
ENSCPOG00000008109	SBNO1	99	83.662	ENSPMEG00000021212	sbno1	95	83.662	Poecilia_mexicana
ENSCPOG00000008109	SBNO1	99	83.303	ENSPREG00000017746	sbno1	95	83.303	Poecilia_reticulata
ENSCPOG00000008109	SBNO1	99	99.277	ENSPPYG00000005084	SBNO1	100	96.552	Pongo_abelii
ENSCPOG00000008109	SBNO1	89	91.358	ENSPCAG00000008634	SBNO1	88	91.322	Procavia_capensis
ENSCPOG00000008109	SBNO1	100	98.043	ENSPCOG00000024277	SBNO1	99	98.909	Propithecus_coquereli
ENSCPOG00000008109	SBNO1	92	99.206	ENSPVAG00000015304	SBNO1	87	99.206	Pteropus_vampyrus
ENSCPOG00000008109	SBNO1	99	83.574	ENSPNYG00000004291	sbno1	95	83.574	Pundamilia_nyererei
ENSCPOG00000008109	SBNO1	99	87.590	ENSPNAG00000015622	sbno1	95	87.590	Pygocentrus_nattereri
ENSCPOG00000008109	SBNO1	99	99.094	ENSRNOG00000001064	Sbno1	99	99.094	Rattus_norvegicus
ENSCPOG00000008109	SBNO1	99	99.277	ENSRROG00000034230	SBNO1	99	99.277	Rhinopithecus_roxellana
ENSCPOG00000008109	SBNO1	97	92.224	ENSSBOG00000015422	SBNO1	100	92.188	Saimiri_boliviensis_boliviensis
ENSCPOG00000008109	SBNO1	99	86.486	ENSSFOG00015019025	sbno1	95	86.486	Scleropages_formosus
ENSCPOG00000008109	SBNO1	99	83.725	ENSSMAG00000013640	sbno1	95	83.725	Scophthalmus_maximus
ENSCPOG00000008109	SBNO1	99	84.810	ENSSDUG00000023480	sbno1	95	84.810	Seriola_dumerili
ENSCPOG00000008109	SBNO1	99	84.810	ENSSLDG00000007928	sbno1	95	84.810	Seriola_lalandi_dorsalis
ENSCPOG00000008109	SBNO1	90	98.734	ENSSARG00000002594	SBNO1	89	98.058	Sorex_araneus
ENSCPOG00000008109	SBNO1	99	93.682	ENSSPUG00000012640	SBNO1	100	88.721	Sphenodon_punctatus
ENSCPOG00000008109	SBNO1	99	83.124	ENSSPAG00000016244	sbno1	95	83.124	Stegastes_partitus
ENSCPOG00000008109	SBNO1	100	99.104	ENSSSCG00000009776	SBNO1	100	97.414	Sus_scrofa
ENSCPOG00000008109	SBNO1	99	95.118	ENSTGUG00000005380	SBNO1	100	91.673	Taeniopygia_guttata
ENSCPOG00000008109	SBNO1	99	84.629	ENSTRUG00000018490	sbno1	95	84.629	Takifugu_rubripes
ENSCPOG00000008109	SBNO1	56	70.421	ENSTNIG00000013506	sbno1	99	70.668	Tetraodon_nigroviridis
ENSCPOG00000008109	SBNO1	100	98.221	ENSUAMG00000019671	SBNO1	100	97.487	Ursus_americanus
ENSCPOG00000008109	SBNO1	100	98.221	ENSUMAG00000004002	SBNO1	100	97.487	Ursus_maritimus
ENSCPOG00000008109	SBNO1	95	95.652	ENSVPAG00000007024	SBNO1	95	95.652	Vicugna_pacos
ENSCPOG00000008109	SBNO1	100	98.221	ENSVVUG00000027807	SBNO1	100	97.487	Vulpes_vulpes
ENSCPOG00000008109	SBNO1	99	91.622	ENSXETG00000031930	SBNO1	95	91.622	Xenopus_tropicalis
ENSCPOG00000008109	SBNO1	86	86.089	ENSXCOG00000011607	sbno1	90	85.864	Xiphophorus_couchianus
ENSCPOG00000008109	SBNO1	99	83.303	ENSXMAG00000002140	sbno1	95	83.303	Xiphophorus_maculatus