EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPOG00000008267 (Gene tree)
Gene ID: 100719464
Gene Symbol: SF3B4
Alias: Hsh49|SAP49|SF3b49
Full Name: splicing factor 3b subunit 4
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Minus strand
Length: 4829 bases
Position: chrDS562857.1:10998477-11003305
Accession: 100719464
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000007432	RRM_1	PF00076.22	2.7e-39	1	2
ENSCPOP00000007432	RRM_1	PF00076.22	2.7e-39	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000008342	SF3B4-201	1873	XM_003478880	ENSCPOP00000007432	424 (aa)	XP_003478928	H0VBY6

Gene Model

Click here to download ENSCPOG00000008267's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000008267's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPOG00000008267	SF3B4	59	35.450	ENSCPOG00000013633	PABPC1L	59	34.921
ENSCPOG00000008267	SF3B4	70	40.310	ENSCPOG00000012917	PABPC1	53	40.152

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000008267	SF3B4	100	99.528	ENSG00000143368	SF3B4	100	100.000	Homo_sapiens
ENSCPOG00000008267	SF3B4	57	96.667	ENSAPOG00000017647	sf3b4	77	80.251	Acanthochromis_polyacanthus
ENSCPOG00000008267	SF3B4	100	99.764	ENSAMEG00000010073	SF3B4	100	99.764	Ailuropoda_melanoleuca
ENSCPOG00000008267	SF3B4	57	96.667	ENSAOCG00000019801	sf3b4	77	80.251	Amphiprion_ocellaris
ENSCPOG00000008267	SF3B4	57	96.667	ENSAPEG00000010365	sf3b4	77	80.251	Amphiprion_percula
ENSCPOG00000008267	SF3B4	57	96.250	ENSATEG00000012844	sf3b4	60	96.250	Anabas_testudineus
ENSCPOG00000008267	SF3B4	62	96.198	ENSACAG00000010019	SF3B4	90	90.078	Anolis_carolinensis
ENSCPOG00000008267	SF3B4	100	99.528	ENSANAG00000031025	SF3B4	100	99.528	Aotus_nancymaae
ENSCPOG00000008267	SF3B4	57	95.833	ENSACLG00000014260	sf3b4	60	95.833	Astatotilapia_calliptera
ENSCPOG00000008267	SF3B4	57	96.250	ENSAMXG00000008282	sf3b4	60	96.250	Astyanax_mexicanus
ENSCPOG00000008267	SF3B4	91	96.354	ENSBTAG00000012793	-	93	96.354	Bos_taurus
ENSCPOG00000008267	SF3B4	100	99.764	ENSBTAG00000012495	SF3B4	100	99.764	Bos_taurus
ENSCPOG00000008267	SF3B4	90	81.787	ENSCJAG00000042351	SF3B4	87	81.787	Callithrix_jacchus
ENSCPOG00000008267	SF3B4	100	99.528	ENSCAFG00000011617	SF3B4	100	99.528	Canis_familiaris
ENSCPOG00000008267	SF3B4	100	99.528	ENSCAFG00020019775	SF3B4	100	99.528	Canis_lupus_dingo
ENSCPOG00000008267	SF3B4	100	99.764	ENSCHIG00000025663	-	100	99.764	Capra_hircus
ENSCPOG00000008267	SF3B4	100	99.528	ENSTSYG00000009295	SF3B4	100	99.528	Carlito_syrichta
ENSCPOG00000008267	SF3B4	98	83.198	ENSCAPG00000006451	SF3B4	96	83.198	Cavia_aperea
ENSCPOG00000008267	SF3B4	95	85.323	ENSCCAG00000019823	-	77	86.196	Cebus_capucinus
ENSCPOG00000008267	SF3B4	100	86.985	ENSCCAG00000021751	-	69	92.593	Cebus_capucinus
ENSCPOG00000008267	SF3B4	100	99.528	ENSCATG00000033114	SF3B4	100	99.528	Cercocebus_atys
ENSCPOG00000008267	SF3B4	100	100.000	ENSCLAG00000015851	SF3B4	100	100.000	Chinchilla_lanigera
ENSCPOG00000008267	SF3B4	100	99.528	ENSCSAG00000018129	SF3B4	100	99.528	Chlorocebus_sabaeus
ENSCPOG00000008267	SF3B4	99	85.849	ENSCPBG00000008041	SF3B4	91	90.625	Chrysemys_picta_bellii
ENSCPOG00000008267	SF3B4	50	90.654	ENSCING00000002337	-	57	90.521	Ciona_intestinalis
ENSCPOG00000008267	SF3B4	100	99.528	ENSCANG00000035579	SF3B4	100	99.528	Colobus_angolensis_palliatus
ENSCPOG00000008267	SF3B4	100	99.528	ENSCGRG00001003590	Sf3b4	100	99.528	Cricetulus_griseus_chok1gshd
ENSCPOG00000008267	SF3B4	100	99.528	ENSCGRG00000016914	Sf3b4	100	99.528	Cricetulus_griseus_crigri
ENSCPOG00000008267	SF3B4	57	96.250	ENSDARG00000018574	sf3b4	77	79.624	Danio_rerio
ENSCPOG00000008267	SF3B4	98	96.875	ENSDNOG00000048908	-	99	96.875	Dasypus_novemcinctus
ENSCPOG00000008267	SF3B4	97	80.872	ENSDNOG00000037231	-	76	81.789	Dasypus_novemcinctus
ENSCPOG00000008267	SF3B4	100	99.764	ENSDORG00000016366	Sf3b4	100	99.764	Dipodomys_ordii
ENSCPOG00000008267	SF3B4	76	92.593	ENSETEG00000008963	SF3B4	76	92.593	Echinops_telfairi
ENSCPOG00000008267	SF3B4	100	99.764	ENSEASG00005001477	SF3B4	100	99.764	Equus_asinus_asinus
ENSCPOG00000008267	SF3B4	100	99.764	ENSECAG00000024737	SF3B4	100	99.764	Equus_caballus
ENSCPOG00000008267	SF3B4	100	99.764	ENSFCAG00000010106	SF3B4	100	99.764	Felis_catus
ENSCPOG00000008267	SF3B4	100	100.000	ENSFDAG00000009286	SF3B4	100	100.000	Fukomys_damarensis
ENSCPOG00000008267	SF3B4	54	96.957	ENSGMOG00000002519	sf3b4	67	97.368	Gadus_morhua
ENSCPOG00000008267	SF3B4	99	89.125	ENSGALG00000013352	SF3B4	90	89.556	Gallus_gallus
ENSCPOG00000008267	SF3B4	63	92.453	ENSGAFG00000010181	sf3b4	58	97.807	Gambusia_affinis
ENSCPOG00000008267	SF3B4	99	85.613	ENSGAGG00000025055	SF3B4	79	90.365	Gopherus_agassizii
ENSCPOG00000008267	SF3B4	100	99.528	ENSGGOG00000004761	SF3B4	100	99.528	Gorilla_gorilla
ENSCPOG00000008267	SF3B4	100	73.349	ENSGGOG00000038845	-	54	89.524	Gorilla_gorilla
ENSCPOG00000008267	SF3B4	57	95.833	ENSHBUG00000002028	sf3b4	60	95.833	Haplochromis_burtoni
ENSCPOG00000008267	SF3B4	100	100.000	ENSHGLG00000012360	SF3B4	100	100.000	Heterocephalus_glaber_female
ENSCPOG00000008267	SF3B4	100	98.821	ENSHGLG00100008533	SF3B4	100	98.821	Heterocephalus_glaber_male
ENSCPOG00000008267	SF3B4	57	96.667	ENSIPUG00000012242	Sf3b4	77	80.000	Ictalurus_punctatus
ENSCPOG00000008267	SF3B4	100	99.764	ENSSTOG00000000684	-	100	99.764	Ictidomys_tridecemlineatus
ENSCPOG00000008267	SF3B4	76	84.052	ENSJJAG00000022500	Sf3b4	95	84.052	Jaculus_jaculus
ENSCPOG00000008267	SF3B4	56	96.203	ENSKMAG00000008154	sf3b4	58	98.246	Kryptolebias_marmoratus
ENSCPOG00000008267	SF3B4	55	97.425	ENSLBEG00000026818	sf3b4	57	98.246	Labrus_bergylta
ENSCPOG00000008267	SF3B4	57	95.473	ENSLACG00000004436	SF3B4	67	95.473	Latimeria_chalumnae
ENSCPOG00000008267	SF3B4	57	95.885	ENSLOCG00000009048	sf3b4	75	85.266	Lepisosteus_oculatus
ENSCPOG00000008267	SF3B4	100	99.294	ENSLAFG00000008531	SF3B4	100	99.294	Loxodonta_africana
ENSCPOG00000008267	SF3B4	100	99.528	ENSMFAG00000042395	SF3B4	100	99.528	Macaca_fascicularis
ENSCPOG00000008267	SF3B4	92	70.812	ENSMFAG00000039067	-	57	80.930	Macaca_fascicularis
ENSCPOG00000008267	SF3B4	100	99.528	ENSMMUG00000007256	SF3B4	100	99.528	Macaca_mulatta
ENSCPOG00000008267	SF3B4	100	99.528	ENSMNEG00000031839	SF3B4	100	99.528	Macaca_nemestrina
ENSCPOG00000008267	SF3B4	92	70.305	ENSMNEG00000031526	-	57	80.465	Macaca_nemestrina
ENSCPOG00000008267	SF3B4	100	99.528	ENSMLEG00000038667	SF3B4	100	99.528	Mandrillus_leucophaeus
ENSCPOG00000008267	SF3B4	57	97.083	ENSMAMG00000014692	sf3b4	60	97.083	Mastacembelus_armatus
ENSCPOG00000008267	SF3B4	57	95.833	ENSMZEG00005026741	sf3b4	60	95.833	Maylandia_zebra
ENSCPOG00000008267	SF3B4	99	87.707	ENSMGAG00000000653	SF3B4	91	89.295	Meleagris_gallopavo
ENSCPOG00000008267	SF3B4	100	99.528	ENSMAUG00000015266	Sf3b4	100	99.528	Mesocricetus_auratus
ENSCPOG00000008267	SF3B4	100	99.764	ENSMICG00000044961	SF3B4	100	99.764	Microcebus_murinus
ENSCPOG00000008267	SF3B4	100	99.528	ENSMOCG00000013658	-	100	99.528	Microtus_ochrogaster
ENSCPOG00000008267	SF3B4	98	94.458	ENSMOCG00000014155	-	100	94.458	Microtus_ochrogaster
ENSCPOG00000008267	SF3B4	54	97.826	ENSMMOG00000018032	sf3b4	58	97.807	Mola_mola
ENSCPOG00000008267	SF3B4	100	99.057	ENSMODG00000018767	SF3B4	100	99.057	Monodelphis_domestica
ENSCPOG00000008267	SF3B4	54	97.797	ENSMALG00000006174	sf3b4	57	97.368	Monopterus_albus
ENSCPOG00000008267	SF3B4	100	99.292	MGP_CAROLIEiJ_G0025365	Sf3b4	100	99.292	Mus_caroli
ENSCPOG00000008267	SF3B4	100	99.528	ENSMUSG00000068856	Sf3b4	100	99.528	Mus_musculus
ENSCPOG00000008267	SF3B4	100	99.528	MGP_PahariEiJ_G0026809	Sf3b4	100	99.528	Mus_pahari
ENSCPOG00000008267	SF3B4	100	99.528	MGP_SPRETEiJ_G0026309	Sf3b4	100	99.528	Mus_spretus
ENSCPOG00000008267	SF3B4	100	99.764	ENSMPUG00000005563	SF3B4	100	99.764	Mustela_putorius_furo
ENSCPOG00000008267	SF3B4	100	99.528	ENSMLUG00000010789	SF3B4	100	99.528	Myotis_lucifugus
ENSCPOG00000008267	SF3B4	100	99.292	ENSNGAG00000016337	Sf3b4	100	99.292	Nannospalax_galili
ENSCPOG00000008267	SF3B4	57	96.250	ENSNBRG00000013865	sf3b4	60	96.250	Neolamprologus_brichardi
ENSCPOG00000008267	SF3B4	100	76.415	ENSNLEG00000000537	-	82	84.568	Nomascus_leucogenys
ENSCPOG00000008267	SF3B4	100	69.860	ENSNLEG00000009693	-	100	69.860	Nomascus_leucogenys
ENSCPOG00000008267	SF3B4	81	100.000	ENSMEUG00000003272	SF3B4	82	100.000	Notamacropus_eugenii
ENSCPOG00000008267	SF3B4	99	97.150	ENSOPRG00000010808	SF3B4	99	97.150	Ochotona_princeps
ENSCPOG00000008267	SF3B4	75	87.382	ENSODEG00000003597	-	79	87.382	Octodon_degus
ENSCPOG00000008267	SF3B4	56	95.359	ENSONIG00000002730	sf3b4	57	97.807	Oreochromis_niloticus
ENSCPOG00000008267	SF3B4	99	57.907	ENSOANG00000004768	-	50	81.776	Ornithorhynchus_anatinus
ENSCPOG00000008267	SF3B4	100	99.764	ENSOCUG00000004614	SF3B4	100	99.764	Oryctolagus_cuniculus
ENSCPOG00000008267	SF3B4	55	96.983	ENSORLG00000003062	sf3b4	59	97.807	Oryzias_latipes
ENSCPOG00000008267	SF3B4	100	99.764	ENSOGAG00000006265	SF3B4	100	99.764	Otolemur_garnettii
ENSCPOG00000008267	SF3B4	86	78.571	ENSOARG00000007368	-	77	79.375	Ovis_aries
ENSCPOG00000008267	SF3B4	100	99.764	ENSOARG00000020718	-	100	99.764	Ovis_aries
ENSCPOG00000008267	SF3B4	100	99.528	ENSPPAG00000040904	SF3B4	100	99.528	Pan_paniscus
ENSCPOG00000008267	SF3B4	100	81.604	ENSPPAG00000030024	-	78	82.407	Pan_paniscus
ENSCPOG00000008267	SF3B4	100	99.764	ENSPPRG00000007384	SF3B4	100	99.764	Panthera_pardus
ENSCPOG00000008267	SF3B4	100	99.292	ENSPTIG00000014530	SF3B4	100	99.292	Panthera_tigris_altaica
ENSCPOG00000008267	SF3B4	100	78.774	ENSPTRG00000049727	-	59	90.254	Pan_troglodytes
ENSCPOG00000008267	SF3B4	100	99.528	ENSPTRG00000001243	SF3B4	100	99.528	Pan_troglodytes
ENSCPOG00000008267	SF3B4	100	99.528	ENSPANG00000005126	SF3B4	100	99.528	Papio_anubis
ENSCPOG00000008267	SF3B4	55	97.425	ENSPKIG00000020669	sf3b4	60	98.246	Paramormyrops_kingsleyae
ENSCPOG00000008267	SF3B4	66	75.357	ENSPSIG00000009565	SF3B4	68	98.378	Pelodiscus_sinensis
ENSCPOG00000008267	SF3B4	100	99.528	ENSPEMG00000017568	Sf3b4	100	99.528	Peromyscus_maniculatus_bairdii
ENSCPOG00000008267	SF3B4	61	88.716	ENSPMAG00000007842	-	50	95.283	Petromyzon_marinus
ENSCPOG00000008267	SF3B4	100	99.057	ENSPCIG00000008765	SF3B4	100	99.057	Phascolarctos_cinereus
ENSCPOG00000008267	SF3B4	64	90.476	ENSPFOG00000005754	sf3b4	58	97.368	Poecilia_formosa
ENSCPOG00000008267	SF3B4	64	90.476	ENSPLAG00000001401	sf3b4	63	97.368	Poecilia_latipinna
ENSCPOG00000008267	SF3B4	64	90.476	ENSPREG00000011076	sf3b4	57	97.807	Poecilia_reticulata
ENSCPOG00000008267	SF3B4	63	96.635	ENSPCAG00000000392	SF3B4	63	96.635	Procavia_capensis
ENSCPOG00000008267	SF3B4	100	99.764	ENSPCOG00000015399	SF3B4	100	99.764	Propithecus_coquereli
ENSCPOG00000008267	SF3B4	100	99.764	ENSPVAG00000014171	SF3B4	100	99.764	Pteropus_vampyrus
ENSCPOG00000008267	SF3B4	57	95.833	ENSPNYG00000012700	sf3b4	60	95.833	Pundamilia_nyererei
ENSCPOG00000008267	SF3B4	57	96.667	ENSPNAG00000000686	sf3b4	61	96.667	Pygocentrus_nattereri
ENSCPOG00000008267	SF3B4	100	99.528	ENSRNOG00000021181	Sf3b4	100	99.528	Rattus_norvegicus
ENSCPOG00000008267	SF3B4	100	99.528	ENSRBIG00000043392	SF3B4	100	99.528	Rhinopithecus_bieti
ENSCPOG00000008267	SF3B4	92	71.208	ENSRROG00000028213	-	91	67.380	Rhinopithecus_roxellana
ENSCPOG00000008267	SF3B4	100	99.528	ENSRROG00000029366	SF3B4	100	99.528	Rhinopithecus_roxellana
ENSCPOG00000008267	SF3B4	100	72.642	ENSSBOG00000025174	-	73	79.257	Saimiri_boliviensis_boliviensis
ENSCPOG00000008267	SF3B4	100	99.292	ENSSBOG00000012310	-	100	99.292	Saimiri_boliviensis_boliviensis
ENSCPOG00000008267	SF3B4	100	96.462	ENSSHAG00000004043	SF3B4	100	98.688	Sarcophilus_harrisii
ENSCPOG00000008267	SF3B4	56	96.624	ENSSFOG00015008864	sf3b4	56	98.246	Scleropages_formosus
ENSCPOG00000008267	SF3B4	57	96.667	ENSSMAG00000006837	sf3b4	60	96.667	Scophthalmus_maximus
ENSCPOG00000008267	SF3B4	57	97.083	ENSSDUG00000012064	sf3b4	60	97.083	Seriola_dumerili
ENSCPOG00000008267	SF3B4	57	97.083	ENSSLDG00000014226	sf3b4	60	97.083	Seriola_lalandi_dorsalis
ENSCPOG00000008267	SF3B4	72	95.102	ENSSPUG00000001028	SF3B4	57	98.684	Sphenodon_punctatus
ENSCPOG00000008267	SF3B4	57	97.500	ENSSPAG00000019219	sf3b4	60	97.500	Stegastes_partitus
ENSCPOG00000008267	SF3B4	85	66.022	ENSSSCG00000039440	-	79	65.432	Sus_scrofa
ENSCPOG00000008267	SF3B4	100	99.528	ENSSSCG00000006665	-	100	99.528	Sus_scrofa
ENSCPOG00000008267	SF3B4	56	97.034	ENSTGUG00000004470	SF3B4	90	98.246	Taeniopygia_guttata
ENSCPOG00000008267	SF3B4	54	96.916	ENSTRUG00000004516	sf3b4	57	96.491	Takifugu_rubripes
ENSCPOG00000008267	SF3B4	100	99.764	ENSTTRG00000005217	SF3B4	100	99.764	Tursiops_truncatus
ENSCPOG00000008267	SF3B4	100	99.764	ENSUAMG00000022468	SF3B4	100	99.764	Ursus_americanus
ENSCPOG00000008267	SF3B4	100	98.821	ENSUMAG00000003802	SF3B4	100	98.821	Ursus_maritimus
ENSCPOG00000008267	SF3B4	97	99.757	ENSVPAG00000008152	SF3B4	100	99.757	Vicugna_pacos
ENSCPOG00000008267	SF3B4	99	92.823	ENSVVUG00000007732	-	100	92.823	Vulpes_vulpes
ENSCPOG00000008267	SF3B4	65	96.377	ENSVVUG00000022697	-	58	96.377	Vulpes_vulpes
ENSCPOG00000008267	SF3B4	55	92.308	ENSXETG00000011038	sf3b4	53	100.000	Xenopus_tropicalis
ENSCPOG00000008267	SF3B4	54	97.391	ENSXCOG00000019895	sf3b4	58	97.807	Xiphophorus_couchianus
ENSCPOG00000008267	SF3B4	54	97.391	ENSXMAG00000003772	sf3b4	58	97.807	Xiphophorus_maculatus