EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCPOG00000008809 (Gene tree)
Gene ID: 100734921
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Plus strand
Length: 103637 bases
Position: chrDS562871.1:11498841-11602477
Accession: 100734921
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000007907	Upf2	PF04050.14	5.4e-33	1	1
ENSCPOP00000007907	MIF4G	PF02854.19	2.6e-64	1	3
ENSCPOP00000007907	MIF4G	PF02854.19	2.6e-64	2	3
ENSCPOP00000007907	MIF4G	PF02854.19	2.6e-64	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000008887	UPF2-201	3759	XM_013156279	ENSCPOP00000007907	1252 (aa)	XP_013011733	H0VD64

Gene Model

Click here to download ENSCPOG00000008809's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000008809's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000008809	UPF2	99	94.770	ENSG00000151461	UPF2	99	93.978	Homo_sapiens
ENSCPOG00000008809	UPF2	100	76.667	ENSAPOG00000015837	UPF2	99	76.270	Acanthochromis_polyacanthus
ENSCPOG00000008809	UPF2	99	96.193	ENSAMEG00000004586	UPF2	99	96.193	Ailuropoda_melanoleuca
ENSCPOG00000008809	UPF2	100	80.110	ENSACIG00000018078	UPF2	99	80.031	Amphilophus_citrinellus
ENSCPOG00000008809	UPF2	100	80.031	ENSAOCG00000016766	UPF2	99	80.110	Amphiprion_ocellaris
ENSCPOG00000008809	UPF2	100	80.110	ENSAPEG00000019084	UPF2	99	80.189	Amphiprion_percula
ENSCPOG00000008809	UPF2	100	80.094	ENSATEG00000021677	UPF2	99	80.141	Anabas_testudineus
ENSCPOG00000008809	UPF2	100	84.956	ENSAPLG00000010287	UPF2	90	89.208	Anas_platyrhynchos
ENSCPOG00000008809	UPF2	100	89.620	ENSACAG00000009259	UPF2	99	89.937	Anolis_carolinensis
ENSCPOG00000008809	UPF2	98	87.560	ENSANAG00000028451	UPF2	99	85.554	Aotus_nancymaae
ENSCPOG00000008809	UPF2	100	79.167	ENSACLG00000012696	UPF2	99	79.874	Astatotilapia_calliptera
ENSCPOG00000008809	UPF2	100	80.881	ENSAMXG00000013700	UPF2	98	79.544	Astyanax_mexicanus
ENSCPOG00000008809	UPF2	99	95.876	ENSBTAG00000000288	UPF2	99	95.876	Bos_taurus
ENSCPOG00000008809	UPF2	99	95.638	ENSCJAG00000020685	UPF2	99	95.638	Callithrix_jacchus
ENSCPOG00000008809	UPF2	99	96.114	ENSCAFG00000004839	UPF2	99	96.114	Canis_familiaris
ENSCPOG00000008809	UPF2	99	93.101	ENSCAFG00020005882	UPF2	99	92.784	Canis_lupus_dingo
ENSCPOG00000008809	UPF2	99	95.956	ENSCHIG00000020359	UPF2	99	95.956	Capra_hircus
ENSCPOG00000008809	UPF2	99	94.449	ENSTSYG00000000935	UPF2	96	100.000	Carlito_syrichta
ENSCPOG00000008809	UPF2	92	90.286	ENSCAPG00000016658	UPF2	95	89.853	Cavia_aperea
ENSCPOG00000008809	UPF2	99	88.343	ENSCCAG00000035991	UPF2	99	89.929	Cebus_capucinus
ENSCPOG00000008809	UPF2	99	95.642	ENSCATG00000032679	UPF2	99	95.642	Cercocebus_atys
ENSCPOG00000008809	UPF2	100	97.304	ENSCLAG00000011434	UPF2	99	97.304	Chinchilla_lanigera
ENSCPOG00000008809	UPF2	99	95.642	ENSCSAG00000013372	UPF2	99	95.642	Chlorocebus_sabaeus
ENSCPOG00000008809	UPF2	88	96.911	ENSCHOG00000000422	UPF2	89	94.981	Choloepus_hoffmanni
ENSCPOG00000008809	UPF2	100	91.039	ENSCPBG00000027823	UPF2	99	90.801	Chrysemys_picta_bellii
ENSCPOG00000008809	UPF2	79	47.835	ENSCSAVG00000007772	-	79	48.796	Ciona_savignyi
ENSCPOG00000008809	UPF2	99	88.679	ENSCANG00000040396	UPF2	99	88.519	Colobus_angolensis_palliatus
ENSCPOG00000008809	UPF2	100	96.117	ENSCGRG00001019347	Upf2	99	96.117	Cricetulus_griseus_chok1gshd
ENSCPOG00000008809	UPF2	100	96.117	ENSCGRG00000017993	Upf2	99	96.117	Cricetulus_griseus_crigri
ENSCPOG00000008809	UPF2	91	78.756	ENSCSEG00000003520	UPF2	80	76.693	Cynoglossus_semilaevis
ENSCPOG00000008809	UPF2	99	79.843	ENSCVAG00000006167	UPF2	100	79.291	Cyprinodon_variegatus
ENSCPOG00000008809	UPF2	99	95.956	ENSDNOG00000018160	UPF2	99	95.956	Dasypus_novemcinctus
ENSCPOG00000008809	UPF2	100	96.038	ENSDORG00000002478	Upf2	99	96.038	Dipodomys_ordii
ENSCPOG00000008809	UPF2	89	34.657	FBgn0029992	Upf2	82	43.860	Drosophila_melanogaster
ENSCPOG00000008809	UPF2	72	100.000	ENSETEG00000011583	-	65	100.000	Echinops_telfairi
ENSCPOG00000008809	UPF2	69	65.522	ENSEBUG00000012448	-	87	72.483	Eptatretus_burgeri
ENSCPOG00000008809	UPF2	99	96.032	ENSEASG00005019274	UPF2	99	97.516	Equus_asinus_asinus
ENSCPOG00000008809	UPF2	99	96.111	ENSECAG00000017022	UPF2	99	96.111	Equus_caballus
ENSCPOG00000008809	UPF2	81	94.534	ENSEEUG00000007819	UPF2	81	94.534	Erinaceus_europaeus
ENSCPOG00000008809	UPF2	100	79.150	ENSELUG00000012014	UPF2	99	79.421	Esox_lucius
ENSCPOG00000008809	UPF2	99	99.441	ENSFCAG00000005785	UPF2	99	95.956	Felis_catus
ENSCPOG00000008809	UPF2	100	90.887	ENSFALG00000001889	UPF2	97	91.363	Ficedula_albicollis
ENSCPOG00000008809	UPF2	100	96.907	ENSFDAG00000014348	UPF2	99	96.907	Fukomys_damarensis
ENSCPOG00000008809	UPF2	99	80.190	ENSFHEG00000009826	UPF2	99	79.762	Fundulus_heteroclitus
ENSCPOG00000008809	UPF2	91	81.347	ENSGMOG00000005557	UPF2	91	81.100	Gadus_morhua
ENSCPOG00000008809	UPF2	100	91.211	ENSGALG00000033772	UPF2	99	90.261	Gallus_gallus
ENSCPOG00000008809	UPF2	92	82.338	ENSGAFG00000020867	UPF2	99	79.088	Gambusia_affinis
ENSCPOG00000008809	UPF2	91	82.744	ENSGACG00000001080	UPF2	99	79.638	Gasterosteus_aculeatus
ENSCPOG00000008809	UPF2	100	90.887	ENSGAGG00000002700	UPF2	99	91.284	Gopherus_agassizii
ENSCPOG00000008809	UPF2	99	94.770	ENSGGOG00000001479	UPF2	99	93.978	Gorilla_gorilla
ENSCPOG00000008809	UPF2	100	79.167	ENSHBUG00000004249	UPF2	99	79.874	Haplochromis_burtoni
ENSCPOG00000008809	UPF2	100	97.066	ENSHGLG00000015176	-	99	97.066	Heterocephalus_glaber_female
ENSCPOG00000008809	UPF2	100	87.780	ENSHGLG00000003822	-	99	86.741	Heterocephalus_glaber_female
ENSCPOG00000008809	UPF2	100	91.253	ENSHGLG00100010036	UPF2	99	93.418	Heterocephalus_glaber_male
ENSCPOG00000008809	UPF2	93	81.702	ENSHCOG00000004025	UPF2	91	81.779	Hippocampus_comes
ENSCPOG00000008809	UPF2	92	82.791	ENSIPUG00000015524	UPF2	98	79.236	Ictalurus_punctatus
ENSCPOG00000008809	UPF2	100	96.355	ENSSTOG00000013075	UPF2	99	96.355	Ictidomys_tridecemlineatus
ENSCPOG00000008809	UPF2	100	93.497	ENSJJAG00000004913	Upf2	99	92.704	Jaculus_jaculus
ENSCPOG00000008809	UPF2	92	82.779	ENSKMAG00000001071	UPF2	99	80.143	Kryptolebias_marmoratus
ENSCPOG00000008809	UPF2	92	83.504	ENSLBEG00000016394	-	97	81.066	Labrus_bergylta
ENSCPOG00000008809	UPF2	71	83.278	ENSLBEG00000000728	-	90	80.343	Labrus_bergylta
ENSCPOG00000008809	UPF2	91	79.675	ENSLACG00000015945	UPF2	99	77.176	Latimeria_chalumnae
ENSCPOG00000008809	UPF2	99	83.268	ENSLOCG00000015698	UPF2	99	83.189	Lepisosteus_oculatus
ENSCPOG00000008809	UPF2	99	94.929	ENSMFAG00000043865	UPF2	99	94.136	Macaca_fascicularis
ENSCPOG00000008809	UPF2	99	94.929	ENSMMUG00000008241	UPF2	99	94.136	Macaca_mulatta
ENSCPOG00000008809	UPF2	80	93.510	ENSMNEG00000008062	UPF2	99	92.794	Macaca_nemestrina
ENSCPOG00000008809	UPF2	95	98.063	ENSMLEG00000036120	UPF2	99	98.301	Mandrillus_leucophaeus
ENSCPOG00000008809	UPF2	100	79.702	ENSMAMG00000018276	UPF2	99	79.749	Mastacembelus_armatus
ENSCPOG00000008809	UPF2	100	79.167	ENSMZEG00005021595	UPF2	99	79.874	Maylandia_zebra
ENSCPOG00000008809	UPF2	99	90.571	ENSMGAG00000004573	UPF2	99	89.778	Meleagris_gallopavo
ENSCPOG00000008809	UPF2	100	93.899	ENSMAUG00000016512	Upf2	99	93.899	Mesocricetus_auratus
ENSCPOG00000008809	UPF2	95	99.490	ENSMICG00000001716	UPF2	99	99.487	Microcebus_murinus
ENSCPOG00000008809	UPF2	100	94.845	ENSMOCG00000008263	Upf2	99	94.370	Microtus_ochrogaster
ENSCPOG00000008809	UPF2	100	77.437	ENSMMOG00000006528	UPF2	81	79.191	Mola_mola
ENSCPOG00000008809	UPF2	99	93.418	ENSMODG00000016794	UPF2	99	93.894	Monodelphis_domestica
ENSCPOG00000008809	UPF2	100	79.386	ENSMALG00000002663	UPF2	99	79.590	Monopterus_albus
ENSCPOG00000008809	UPF2	100	94.691	MGP_CAROLIEiJ_G0023157	Upf2	99	97.514	Mus_caroli
ENSCPOG00000008809	UPF2	100	94.612	ENSMUSG00000043241	Upf2	99	96.941	Mus_musculus
ENSCPOG00000008809	UPF2	100	94.532	MGP_PahariEiJ_G0019217	Upf2	99	96.558	Mus_pahari
ENSCPOG00000008809	UPF2	100	95.721	MGP_SPRETEiJ_G0024075	Upf2	99	96.941	Mus_spretus
ENSCPOG00000008809	UPF2	99	95.956	ENSMPUG00000001064	UPF2	99	95.956	Mustela_putorius_furo
ENSCPOG00000008809	UPF2	99	95.415	ENSMLUG00000000228	UPF2	99	95.415	Myotis_lucifugus
ENSCPOG00000008809	UPF2	100	79.167	ENSNBRG00000013629	UPF2	99	79.874	Neolamprologus_brichardi
ENSCPOG00000008809	UPF2	99	94.849	ENSNLEG00000012058	UPF2	99	94.057	Nomascus_leucogenys
ENSCPOG00000008809	UPF2	52	98.446	ENSMEUG00000002180	-	53	98.446	Notamacropus_eugenii
ENSCPOG00000008809	UPF2	82	100.000	ENSOPRG00000006801	-	81	100.000	Ochotona_princeps
ENSCPOG00000008809	UPF2	100	96.987	ENSODEG00000001290	UPF2	99	96.987	Octodon_degus
ENSCPOG00000008809	UPF2	100	79.245	ENSONIG00000017991	UPF2	99	79.953	Oreochromis_niloticus
ENSCPOG00000008809	UPF2	99	94.317	ENSOCUG00000006230	UPF2	99	94.791	Oryctolagus_cuniculus
ENSCPOG00000008809	UPF2	92	82.158	ENSORLG00000017189	UPF2	99	79.009	Oryzias_latipes
ENSCPOG00000008809	UPF2	92	82.158	ENSORLG00020005969	UPF2	99	79.009	Oryzias_latipes_hni
ENSCPOG00000008809	UPF2	92	82.158	ENSORLG00015005713	UPF2	99	79.009	Oryzias_latipes_hsok
ENSCPOG00000008809	UPF2	100	76.941	ENSOMEG00000023420	UPF2	97	76.318	Oryzias_melastigma
ENSCPOG00000008809	UPF2	99	95.083	ENSOGAG00000005796	UPF2	99	94.211	Otolemur_garnettii
ENSCPOG00000008809	UPF2	99	95.804	ENSOARG00000014587	UPF2	99	95.804	Ovis_aries
ENSCPOG00000008809	UPF2	99	90.873	ENSPPAG00000037953	UPF2	99	90.808	Pan_paniscus
ENSCPOG00000008809	UPF2	99	95.956	ENSPPRG00000000690	UPF2	99	95.956	Panthera_pardus
ENSCPOG00000008809	UPF2	99	95.956	ENSPTIG00000008867	UPF2	99	95.956	Panthera_tigris_altaica
ENSCPOG00000008809	UPF2	99	94.770	ENSPTRG00000002291	UPF2	99	93.978	Pan_troglodytes
ENSCPOG00000008809	UPF2	99	94.929	ENSPANG00000023399	UPF2	99	94.136	Papio_anubis
ENSCPOG00000008809	UPF2	99	79.167	ENSPKIG00000025502	UPF2	99	78.223	Paramormyrops_kingsleyae
ENSCPOG00000008809	UPF2	59	88.204	ENSPSIG00000015158	UPF2	94	88.740	Pelodiscus_sinensis
ENSCPOG00000008809	UPF2	93	80.290	ENSPMGG00000005259	UPF2	92	81.304	Periophthalmus_magnuspinnatus
ENSCPOG00000008809	UPF2	93	95.238	ENSPEMG00000015731	Upf2	99	96.726	Peromyscus_maniculatus_bairdii
ENSCPOG00000008809	UPF2	99	93.180	ENSPCIG00000006656	UPF2	99	93.418	Phascolarctos_cinereus
ENSCPOG00000008809	UPF2	92	82.935	ENSPFOG00000017118	UPF2	99	79.167	Poecilia_formosa
ENSCPOG00000008809	UPF2	92	82.977	ENSPLAG00000005094	UPF2	99	79.167	Poecilia_latipinna
ENSCPOG00000008809	UPF2	92	82.935	ENSPMEG00000017009	UPF2	99	79.167	Poecilia_mexicana
ENSCPOG00000008809	UPF2	92	82.348	ENSPREG00000021880	UPF2	99	79.544	Poecilia_reticulata
ENSCPOG00000008809	UPF2	66	95.564	ENSPPYG00000002089	-	99	95.564	Pongo_abelii
ENSCPOG00000008809	UPF2	99	83.109	ENSPCAG00000000684	UPF2	99	83.109	Procavia_capensis
ENSCPOG00000008809	UPF2	99	91.753	ENSPCOG00000021656	UPF2	99	90.801	Propithecus_coquereli
ENSCPOG00000008809	UPF2	99	87.896	ENSPVAG00000017286	UPF2	99	88.273	Pteropus_vampyrus
ENSCPOG00000008809	UPF2	100	76.730	ENSPNYG00000017096	UPF2	99	77.437	Pundamilia_nyererei
ENSCPOG00000008809	UPF2	100	81.147	ENSPNAG00000009357	UPF2	99	79.890	Pygocentrus_nattereri
ENSCPOG00000008809	UPF2	100	88.950	ENSRNOG00000023593	Upf2	98	100.000	Rattus_norvegicus
ENSCPOG00000008809	UPF2	99	93.492	ENSRBIG00000037780	UPF2	99	93.016	Rhinopithecus_bieti
ENSCPOG00000008809	UPF2	99	94.453	ENSRROG00000043547	UPF2	99	93.185	Rhinopithecus_roxellana
ENSCPOG00000008809	UPF2	99	95.480	ENSSBOG00000020012	UPF2	99	95.480	Saimiri_boliviensis_boliviensis
ENSCPOG00000008809	UPF2	99	79.622	ENSSFOG00015023788	upf2	99	80.930	Scleropages_formosus
ENSCPOG00000008809	UPF2	90	80.399	ENSSMAG00000007637	UPF2	98	78.192	Scophthalmus_maximus
ENSCPOG00000008809	UPF2	92	83.020	ENSSDUG00000017244	UPF2	98	80.189	Seriola_dumerili
ENSCPOG00000008809	UPF2	92	81.437	ENSSLDG00000016866	UPF2	81	80.872	Seriola_lalandi_dorsalis
ENSCPOG00000008809	UPF2	100	91.838	ENSSARG00000008615	UPF2	99	93.423	Sorex_araneus
ENSCPOG00000008809	UPF2	100	87.718	ENSSPUG00000014544	UPF2	98	88.114	Sphenodon_punctatus
ENSCPOG00000008809	UPF2	69	95.502	ENSSSCG00000011117	-	99	95.502	Sus_scrofa
ENSCPOG00000008809	UPF2	99	90.794	ENSTGUG00000002163	-	99	91.270	Taeniopygia_guttata
ENSCPOG00000008809	UPF2	100	79.749	ENSTRUG00000007519	UPF2	98	79.717	Takifugu_rubripes
ENSCPOG00000008809	UPF2	100	77.978	ENSTNIG00000004453	UPF2	99	77.786	Tetraodon_nigroviridis
ENSCPOG00000008809	UPF2	93	87.564	ENSTBEG00000012679	UPF2	92	86.286	Tupaia_belangeri
ENSCPOG00000008809	UPF2	99	95.635	ENSTTRG00000016388	UPF2	99	95.635	Tursiops_truncatus
ENSCPOG00000008809	UPF2	94	100.000	ENSUAMG00000023560	UPF2	99	100.000	Ursus_americanus
ENSCPOG00000008809	UPF2	99	96.273	ENSUMAG00000012953	UPF2	94	96.273	Ursus_maritimus
ENSCPOG00000008809	UPF2	85	96.774	ENSVPAG00000006763	UPF2	84	96.774	Vicugna_pacos
ENSCPOG00000008809	UPF2	99	96.035	ENSVVUG00000006166	UPF2	99	96.035	Vulpes_vulpes
ENSCPOG00000008809	UPF2	99	80.904	ENSXETG00000033103	UPF2	99	80.499	Xenopus_tropicalis
ENSCPOG00000008809	UPF2	92	82.509	ENSXCOG00000011604	UPF2	91	82.549	Xiphophorus_couchianus
ENSCPOG00000008809	UPF2	92	82.806	ENSXMAG00000017209	UPF2	91	82.464	Xiphophorus_maculatus