EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPOG00000009257 (Gene tree)
Gene ID: 101787475
Gene Symbol: -
Alias: -
Full Name: DNA dC->dU-editing enzyme APOBEC3-like
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Plus strand
Length: 51815 bases
Position: chrDS562883.1:23121069-23172883
Accession: 101787475
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000008311	APOBEC_N	PF08210.11	1.6e-86	1	2
ENSCPOP00000008311	APOBEC_N	PF08210.11	1.6e-86	2	2
ENSCPOP00000016089	APOBEC_N	PF08210.11	2.8e-52	1	1
ENSCPOP00000008311	APOBEC_C	PF05240.14	8.5e-56	1	2
ENSCPOP00000008311	APOBEC_C	PF05240.14	8.5e-56	2	2
ENSCPOP00000016089	APOBEC_C	PF05240.14	8.4e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000025065	-	1584	-	ENSCPOP00000016089	206 (aa)	-	H0VZF7
ENSCPOT00000009342	-	2139	XM_013153101	ENSCPOP00000008311	410 (aa)	XP_013008555	H0VE76

Gene Model

Click here to download ENSCPOG00000009257's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000009257's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPOG00000009257	-	88	36.932	ENSCPOG00000039255	-	100	36.932
ENSCPOG00000009257	-	88	36.364	ENSCPOG00000030440	-	100	36.364
ENSCPOG00000009257	-	84	34.444	ENSCPOG00000036103	APOBEC2	81	34.270
ENSCPOG00000009257	-	85	39.344	ENSCPOG00000037838	-	99	39.344

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000009257	-	86	52.809	ENSG00000100298	APOBEC3H	100	52.486	Homo_sapiens
ENSCPOG00000009257	-	100	41.317	ENSAMEG00000010818	-	99	41.190	Ailuropoda_melanoleuca
ENSCPOG00000009257	-	91	53.000	ENSANAG00000025410	APOBEC3H	97	52.607	Aotus_nancymaae
ENSCPOG00000009257	-	88	52.542	ENSBTAG00000007755	APOBEC3H	92	52.542	Bos_taurus
ENSCPOG00000009257	-	87	50.000	ENSCJAG00000012524	APOBEC3H	93	50.000	Callithrix_jacchus
ENSCPOG00000009257	-	89	48.168	ENSCAFG00000001361	APOBEC3Z3	100	48.168	Canis_familiaris
ENSCPOG00000009257	-	86	48.603	ENSCAFG00020002584	-	92	49.143	Canis_lupus_dingo
ENSCPOG00000009257	-	88	51.667	ENSCHIG00000026580	-	92	51.667	Capra_hircus
ENSCPOG00000009257	-	80	51.724	ENSTSYG00000032894	-	100	51.724	Carlito_syrichta
ENSCPOG00000009257	-	90	50.251	ENSCCAG00000008525	APOBEC3H	96	50.980	Cebus_capucinus
ENSCPOG00000009257	-	86	54.494	ENSCATG00000030302	APOBEC3H	100	54.494	Cercocebus_atys
ENSCPOG00000009257	-	90	74.500	ENSCLAG00000016615	-	99	74.500	Chinchilla_lanigera
ENSCPOG00000009257	-	91	54.229	ENSCSAG00000006371	APOBEC3H	96	54.229	Chlorocebus_sabaeus
ENSCPOG00000009257	-	96	49.633	ENSCGRG00001022976	Apobec3	97	49.633	Cricetulus_griseus_chok1gshd
ENSCPOG00000009257	-	96	49.633	ENSCGRG00000005621	Apobec3	97	49.633	Cricetulus_griseus_crigri
ENSCPOG00000009257	-	84	52.408	ENSDORG00000027271	-	100	50.000	Dipodomys_ordii
ENSCPOG00000009257	-	83	51.562	ENSECAG00000007726	APOBEC3H	83	51.562	Equus_caballus
ENSCPOG00000009257	-	89	51.309	ENSFCAG00000005251	APOBEC3Z3	99	51.309	Felis_catus
ENSCPOG00000009257	-	82	53.927	ENSSTOG00000007125	-	91	53.927	Ictidomys_tridecemlineatus
ENSCPOG00000009257	-	95	46.250	ENSJJAG00000016840	-	97	46.250	Jaculus_jaculus
ENSCPOG00000009257	-	87	46.575	ENSLAFG00000027404	-	98	46.575	Loxodonta_africana
ENSCPOG00000009257	-	93	54.106	ENSMFAG00000031827	APOBEC3H	99	54.106	Macaca_fascicularis
ENSCPOG00000009257	-	93	53.623	ENSMMUG00000001016	APOBEC3H	99	53.623	Macaca_mulatta
ENSCPOG00000009257	-	93	54.106	ENSMNEG00000039259	APOBEC3H	99	54.106	Macaca_nemestrina
ENSCPOG00000009257	-	93	53.140	ENSMLEG00000033417	APOBEC3H	99	53.140	Mandrillus_leucophaeus
ENSCPOG00000009257	-	96	49.272	ENSMAUG00000011683	Apobec3	98	49.272	Mesocricetus_auratus
ENSCPOG00000009257	-	100	41.395	ENSMOCG00000021576	Apobec3	95	47.317	Microtus_ochrogaster
ENSCPOG00000009257	-	93	45.939	MGP_CAROLIEiJ_G0020029	Apobec3	99	47.315	Mus_caroli
ENSCPOG00000009257	-	93	46.447	ENSMUSG00000009585	Apobec3	98	50.526	Mus_musculus
ENSCPOG00000009257	-	96	44.717	MGP_PahariEiJ_G0020031	-	97	44.717	Mus_pahari
ENSCPOG00000009257	-	93	45.431	MGP_SPRETEiJ_G0020927	Apobec3	98	44.578	Mus_spretus
ENSCPOG00000009257	-	92	45.619	ENSMPUG00000013239	-	99	45.619	Mustela_putorius_furo
ENSCPOG00000009257	-	91	50.000	ENSNGAG00000018998	Apobec3	100	49.498	Nannospalax_galili
ENSCPOG00000009257	-	92	53.922	ENSNLEG00000015218	-	98	53.922	Nomascus_leucogenys
ENSCPOG00000009257	-	87	49.718	ENSOCUG00000023913	-	93	47.397	Oryctolagus_cuniculus
ENSCPOG00000009257	-	85	46.629	ENSOARG00000016290	APOBEC3F	96	46.629	Ovis_aries
ENSCPOG00000009257	-	86	52.809	ENSPPAG00000036522	APOBEC3H	100	52.486	Pan_paniscus
ENSCPOG00000009257	-	89	51.562	ENSPPRG00000003941	-	99	51.562	Panthera_pardus
ENSCPOG00000009257	-	87	44.211	ENSPPRG00000003675	-	98	44.211	Panthera_pardus
ENSCPOG00000009257	-	89	51.562	ENSPTIG00000010283	-	99	51.562	Panthera_tigris_altaica
ENSCPOG00000009257	-	86	52.809	ENSPTRG00000014390	APOBEC3H	100	52.486	Pan_troglodytes
ENSCPOG00000009257	-	91	54.726	ENSPANG00000010774	APOBEC3H	96	54.726	Papio_anubis
ENSCPOG00000009257	-	100	41.000	ENSPEMG00000000456	Apobec3	100	42.921	Peromyscus_maniculatus_bairdii
ENSCPOG00000009257	-	91	52.764	ENSPPYG00000011834	-	98	51.961	Pongo_abelii
ENSCPOG00000009257	-	85	44.571	ENSPCAG00000015655	-	99	44.571	Procavia_capensis
ENSCPOG00000009257	-	60	47.200	ENSPVAG00000024161	-	95	47.200	Pteropus_vampyrus
ENSCPOG00000009257	-	62	47.200	ENSPVAG00000024267	-	100	47.200	Pteropus_vampyrus
ENSCPOG00000009257	-	85	56.000	ENSPVAG00000009462	-	100	56.000	Pteropus_vampyrus
ENSCPOG00000009257	-	88	46.933	ENSRNOG00000016852	Apobec3	93	46.933	Rattus_norvegicus
ENSCPOG00000009257	-	93	54.106	ENSRBIG00000029088	APOBEC3H	99	54.106	Rhinopithecus_bieti
ENSCPOG00000009257	-	91	55.224	ENSRROG00000024699	APOBEC3H	96	55.224	Rhinopithecus_roxellana
ENSCPOG00000009257	-	91	50.746	ENSSBOG00000030005	APOBEC3H	100	53.237	Saimiri_boliviensis_boliviensis
ENSCPOG00000009257	-	91	52.850	ENSSSCG00000000091	APOBEC3B	90	48.285	Sus_scrofa
ENSCPOG00000009257	-	78	56.213	ENSTBEG00000001532	-	100	56.213	Tupaia_belangeri
ENSCPOG00000009257	-	85	54.857	ENSTTRG00000001266	-	99	54.857	Tursiops_truncatus
ENSCPOG00000009257	-	87	51.309	ENSUAMG00000004427	-	87	51.309	Ursus_americanus
ENSCPOG00000009257	-	90	52.356	ENSUMAG00000014435	-	99	52.356	Ursus_maritimus
ENSCPOG00000009257	-	55	53.543	ENSVPAG00000011108	-	99	53.543	Vicugna_pacos
ENSCPOG00000009257	-	76	58.537	ENSVVUG00000014624	-	59	58.537	Vulpes_vulpes