EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCPOG00000009353 (Gene tree)
Gene ID: 100723509
Gene Symbol: SF3B1
Alias: Hsh155|PRPF10|Prp10|SAP155|SF3b155
Full Name: splicing factor 3b subunit 1
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Plus strand
Length: 45113 bases
Position: chrDS562959.1:3241474-3286586
Accession: 100723509
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000024524	SF3b1	PF08920.10	3.7e-47	1	1
ENSCPOP00000008395	SF3b1	PF08920.10	3.7e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000009438	SF3B1-202	3921	-	ENSCPOP00000008395	1306 (aa)	-	H0VEF4
ENSCPOT00000033250	SF3B1-201	6032	XM_013145217	ENSCPOP00000024524	1294 (aa)	XP_013000671	A0A286XGH7

Gene Model

Click here to download ENSCPOG00000009353's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000009353's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000009353	SF3B1	100	100.000	ENSG00000115524	SF3B1	99	100.000	Homo_sapiens
ENSCPOG00000009353	SF3B1	100	93.573	ENSAPOG00000011894	sf3b1	99	93.573	Acanthochromis_polyacanthus
ENSCPOG00000009353	SF3B1	100	99.923	ENSAMEG00000013809	SF3B1	99	99.923	Ailuropoda_melanoleuca
ENSCPOG00000009353	SF3B1	100	93.164	ENSACIG00000020910	sf3b1	96	93.011	Amphilophus_citrinellus
ENSCPOG00000009353	SF3B1	100	93.573	ENSAOCG00000004478	sf3b1	99	93.573	Amphiprion_ocellaris
ENSCPOG00000009353	SF3B1	100	93.573	ENSAPEG00000012937	sf3b1	99	93.573	Amphiprion_percula
ENSCPOG00000009353	SF3B1	100	93.645	ENSATEG00000020435	sf3b1	99	93.707	Anabas_testudineus
ENSCPOG00000009353	SF3B1	100	99.382	ENSAPLG00000003993	SF3B1	99	99.383	Anas_platyrhynchos
ENSCPOG00000009353	SF3B1	100	98.918	ENSACAG00000009612	SF3B1	99	98.919	Anolis_carolinensis
ENSCPOG00000009353	SF3B1	100	100.000	ENSANAG00000021577	SF3B1	100	100.000	Aotus_nancymaae
ENSCPOG00000009353	SF3B1	100	92.802	ENSACLG00000023470	sf3b1	99	92.649	Astatotilapia_calliptera
ENSCPOG00000009353	SF3B1	100	94.104	ENSAMXG00000002219	sf3b1	99	93.951	Astyanax_mexicanus
ENSCPOG00000009353	SF3B1	100	99.923	ENSBTAG00000008915	SF3B1	99	99.923	Bos_taurus
ENSCPOG00000009353	SF3B1	99	66.440	WBGene00011605	sftb-1	98	66.516	Caenorhabditis_elegans
ENSCPOG00000009353	SF3B1	100	100.000	ENSCJAG00000003902	SF3B1	99	100.000	Callithrix_jacchus
ENSCPOG00000009353	SF3B1	100	100.000	ENSCAFG00000010826	SF3B1	99	100.000	Canis_familiaris
ENSCPOG00000009353	SF3B1	100	100.000	ENSCAFG00020004750	SF3B1	99	100.000	Canis_lupus_dingo
ENSCPOG00000009353	SF3B1	100	99.923	ENSCHIG00000015226	SF3B1	99	99.923	Capra_hircus
ENSCPOG00000009353	SF3B1	100	99.923	ENSTSYG00000009214	SF3B1	99	99.923	Carlito_syrichta
ENSCPOG00000009353	SF3B1	100	100.000	ENSCAPG00000006547	SF3B1	100	100.000	Cavia_aperea
ENSCPOG00000009353	SF3B1	100	100.000	ENSCCAG00000020506	SF3B1	99	100.000	Cebus_capucinus
ENSCPOG00000009353	SF3B1	100	100.000	ENSCATG00000035735	SF3B1	99	100.000	Cercocebus_atys
ENSCPOG00000009353	SF3B1	100	100.000	ENSCLAG00000014767	SF3B1	99	100.000	Chinchilla_lanigera
ENSCPOG00000009353	SF3B1	100	100.000	ENSCSAG00000011505	SF3B1	99	100.000	Chlorocebus_sabaeus
ENSCPOG00000009353	SF3B1	76	98.182	ENSCHOG00000009860	SF3B1	75	98.148	Choloepus_hoffmanni
ENSCPOG00000009353	SF3B1	100	99.227	ENSCPBG00000021902	SF3B1	99	99.406	Chrysemys_picta_bellii
ENSCPOG00000009353	SF3B1	69	78.060	ENSCING00000002558	-	99	78.771	Ciona_intestinalis
ENSCPOG00000009353	SF3B1	99	80.168	ENSCSAVG00000002559	-	99	79.771	Ciona_savignyi
ENSCPOG00000009353	SF3B1	100	100.000	ENSCANG00000029415	SF3B1	99	100.000	Colobus_angolensis_palliatus
ENSCPOG00000009353	SF3B1	100	100.000	ENSCGRG00001016990	Sf3b1	99	100.000	Cricetulus_griseus_chok1gshd
ENSCPOG00000009353	SF3B1	100	100.000	ENSCGRG00000005301	Sf3b1	99	100.000	Cricetulus_griseus_crigri
ENSCPOG00000009353	SF3B1	100	90.015	ENSCSEG00000003860	sf3b1	99	89.939	Cynoglossus_semilaevis
ENSCPOG00000009353	SF3B1	96	93.625	ENSCVAG00000003680	sf3b1	99	93.625	Cyprinodon_variegatus
ENSCPOG00000009353	SF3B1	100	93.573	ENSDARG00000056138	sf3b1	99	93.497	Danio_rerio
ENSCPOG00000009353	SF3B1	100	99.923	ENSDNOG00000011754	SF3B1	99	99.923	Dasypus_novemcinctus
ENSCPOG00000009353	SF3B1	100	97.295	ENSDORG00000002399	Sf3b1	100	97.297	Dipodomys_ordii
ENSCPOG00000009353	SF3B1	100	76.741	FBgn0031266	Sf3b1	99	76.741	Drosophila_melanogaster
ENSCPOG00000009353	SF3B1	83	99.351	ENSETEG00000009188	SF3B1	100	99.351	Echinops_telfairi
ENSCPOG00000009353	SF3B1	100	87.260	ENSEBUG00000004325	sf3b1	100	90.191	Eptatretus_burgeri
ENSCPOG00000009353	SF3B1	100	99.923	ENSEASG00005020159	SF3B1	97	99.923	Equus_asinus_asinus
ENSCPOG00000009353	SF3B1	100	99.923	ENSECAG00000021657	SF3B1	97	99.923	Equus_caballus
ENSCPOG00000009353	SF3B1	87	100.000	ENSEEUG00000000836	SF3B1	81	100.000	Erinaceus_europaeus
ENSCPOG00000009353	SF3B1	100	93.080	ENSELUG00000005977	sf3b1	98	92.808	Esox_lucius
ENSCPOG00000009353	SF3B1	100	100.000	ENSFCAG00000005038	SF3B1	99	100.000	Felis_catus
ENSCPOG00000009353	SF3B1	100	99.459	ENSFALG00000004281	SF3B1	99	99.459	Ficedula_albicollis
ENSCPOG00000009353	SF3B1	100	100.000	ENSFDAG00000017510	SF3B1	99	100.000	Fukomys_damarensis
ENSCPOG00000009353	SF3B1	100	92.884	ENSFHEG00000014333	sf3b1	99	92.884	Fundulus_heteroclitus
ENSCPOG00000009353	SF3B1	100	93.482	ENSGMOG00000006773	sf3b1	99	93.482	Gadus_morhua
ENSCPOG00000009353	SF3B1	100	99.382	ENSGALG00000008038	SF3B1	99	99.382	Gallus_gallus
ENSCPOG00000009353	SF3B1	99	93.441	ENSGAFG00000000704	sf3b1	99	93.441	Gambusia_affinis
ENSCPOG00000009353	SF3B1	100	93.625	ENSGACG00000008839	sf3b1	99	93.625	Gasterosteus_aculeatus
ENSCPOG00000009353	SF3B1	100	99.227	ENSGAGG00000017478	SF3B1	99	99.227	Gopherus_agassizii
ENSCPOG00000009353	SF3B1	100	93.164	ENSGGOG00000009264	SF3B1	99	94.231	Gorilla_gorilla
ENSCPOG00000009353	SF3B1	99	92.868	ENSHBUG00000007705	sf3b1	99	92.715	Haplochromis_burtoni
ENSCPOG00000009353	SF3B1	100	100.000	ENSHGLG00000008285	-	99	100.000	Heterocephalus_glaber_female
ENSCPOG00000009353	SF3B1	100	97.991	ENSHGLG00100005535	-	99	97.992	Heterocephalus_glaber_male
ENSCPOG00000009353	SF3B1	100	92.998	ENSHCOG00000016775	sf3b1	99	92.846	Hippocampus_comes
ENSCPOG00000009353	SF3B1	100	93.951	ENSIPUG00000013171	sf3b1	99	93.951	Ictalurus_punctatus
ENSCPOG00000009353	SF3B1	100	100.000	ENSSTOG00000011034	SF3B1	99	100.000	Ictidomys_tridecemlineatus
ENSCPOG00000009353	SF3B1	99	99.922	ENSJJAG00000010903	Sf3b1	99	99.922	Jaculus_jaculus
ENSCPOG00000009353	SF3B1	100	93.053	ENSKMAG00000004009	sf3b1	99	92.977	Kryptolebias_marmoratus
ENSCPOG00000009353	SF3B1	100	93.538	ENSLBEG00000022208	sf3b1	99	93.385	Labrus_bergylta
ENSCPOG00000009353	SF3B1	100	92.490	ENSLACG00000014832	SF3B1	99	92.490	Latimeria_chalumnae
ENSCPOG00000009353	SF3B1	100	94.878	ENSLOCG00000003899	sf3b1	99	94.725	Lepisosteus_oculatus
ENSCPOG00000009353	SF3B1	100	100.000	ENSLAFG00000001956	SF3B1	99	100.000	Loxodonta_africana
ENSCPOG00000009353	SF3B1	100	100.000	ENSMMUG00000022430	SF3B1	99	100.000	Macaca_mulatta
ENSCPOG00000009353	SF3B1	100	100.000	ENSMNEG00000042333	SF3B1	100	100.000	Macaca_nemestrina
ENSCPOG00000009353	SF3B1	96	93.478	ENSMLEG00000026141	SF3B1	99	94.027	Mandrillus_leucophaeus
ENSCPOG00000009353	SF3B1	100	93.568	ENSMAMG00000010241	sf3b1	99	93.568	Mastacembelus_armatus
ENSCPOG00000009353	SF3B1	100	92.802	ENSMZEG00005021254	sf3b1	99	92.649	Maylandia_zebra
ENSCPOG00000009353	SF3B1	100	98.764	ENSMGAG00000007017	SF3B1	99	98.766	Meleagris_gallopavo
ENSCPOG00000009353	SF3B1	100	95.750	ENSMAUG00000009071	Sf3b1	99	95.753	Mesocricetus_auratus
ENSCPOG00000009353	SF3B1	100	99.923	ENSMICG00000013879	SF3B1	99	99.923	Microcebus_murinus
ENSCPOG00000009353	SF3B1	100	95.595	ENSMOCG00000000455	Sf3b1	99	95.598	Microtus_ochrogaster
ENSCPOG00000009353	SF3B1	83	93.088	ENSMMOG00000000475	sf3b1	99	93.088	Mola_mola
ENSCPOG00000009353	SF3B1	100	99.304	ENSMODG00000012275	SF3B1	99	99.304	Monodelphis_domestica
ENSCPOG00000009353	SF3B1	100	93.492	ENSMALG00000017211	sf3b1	99	93.492	Monopterus_albus
ENSCPOG00000009353	SF3B1	100	100.000	MGP_CAROLIEiJ_G0014141	Sf3b1	99	100.000	Mus_caroli
ENSCPOG00000009353	SF3B1	100	100.000	ENSMUSG00000025982	Sf3b1	99	100.000	Mus_musculus
ENSCPOG00000009353	SF3B1	100	100.000	MGP_SPRETEiJ_G0014947	Sf3b1	99	100.000	Mus_spretus
ENSCPOG00000009353	SF3B1	100	100.000	ENSMPUG00000007799	SF3B1	99	100.000	Mustela_putorius_furo
ENSCPOG00000009353	SF3B1	100	98.764	ENSMLUG00000000840	SF3B1	99	98.764	Myotis_lucifugus
ENSCPOG00000009353	SF3B1	100	100.000	ENSNGAG00000021884	-	99	100.000	Nannospalax_galili
ENSCPOG00000009353	SF3B1	100	89.025	ENSNBRG00000015816	sf3b1	99	89.025	Neolamprologus_brichardi
ENSCPOG00000009353	SF3B1	100	100.000	ENSNLEG00000006861	SF3B1	99	100.000	Nomascus_leucogenys
ENSCPOG00000009353	SF3B1	70	100.000	ENSMEUG00000015848	-	67	100.000	Notamacropus_eugenii
ENSCPOG00000009353	SF3B1	100	88.022	ENSOPRG00000008596	SF3B1	99	88.022	Ochotona_princeps
ENSCPOG00000009353	SF3B1	100	100.000	ENSODEG00000011153	-	99	100.000	Octodon_degus
ENSCPOG00000009353	SF3B1	100	92.802	ENSONIG00000013758	sf3b1	99	92.649	Oreochromis_niloticus
ENSCPOG00000009353	SF3B1	84	98.985	ENSOCUG00000012722	-	96	98.985	Oryctolagus_cuniculus
ENSCPOG00000009353	SF3B1	100	93.338	ENSORLG00000020219	sf3b1	99	93.338	Oryzias_latipes
ENSCPOG00000009353	SF3B1	100	93.338	ENSORLG00020001746	sf3b1	99	93.338	Oryzias_latipes_hni
ENSCPOG00000009353	SF3B1	64	90.843	ENSORLG00015001759	sf3b1	97	90.843	Oryzias_latipes_hsok
ENSCPOG00000009353	SF3B1	100	93.344	ENSOMEG00000019231	sf3b1	99	93.344	Oryzias_melastigma
ENSCPOG00000009353	SF3B1	100	99.923	ENSOARG00000015374	SF3B1	99	99.923	Ovis_aries
ENSCPOG00000009353	SF3B1	100	100.000	ENSPPAG00000035007	SF3B1	99	100.000	Pan_paniscus
ENSCPOG00000009353	SF3B1	100	100.000	ENSPPRG00000009090	SF3B1	99	100.000	Panthera_pardus
ENSCPOG00000009353	SF3B1	100	100.000	ENSPTIG00000021557	SF3B1	99	100.000	Panthera_tigris_altaica
ENSCPOG00000009353	SF3B1	100	91.448	ENSPTRG00000012771	SF3B1	99	91.455	Pan_troglodytes
ENSCPOG00000009353	SF3B1	100	100.000	ENSPANG00000013417	SF3B1	99	100.000	Papio_anubis
ENSCPOG00000009353	SF3B1	100	95.015	ENSPKIG00000000784	sf3b1	99	94.862	Paramormyrops_kingsleyae
ENSCPOG00000009353	SF3B1	100	97.991	ENSPSIG00000017222	SF3B1	99	97.917	Pelodiscus_sinensis
ENSCPOG00000009353	SF3B1	90	93.968	ENSPMGG00000004330	sf3b1	98	93.798	Periophthalmus_magnuspinnatus
ENSCPOG00000009353	SF3B1	100	100.000	ENSPEMG00000010699	Sf3b1	100	100.000	Peromyscus_maniculatus_bairdii
ENSCPOG00000009353	SF3B1	100	90.207	ENSPMAG00000001311	sf3b1	99	90.367	Petromyzon_marinus
ENSCPOG00000009353	SF3B1	100	99.227	ENSPCIG00000010642	SF3B1	99	99.227	Phascolarctos_cinereus
ENSCPOG00000009353	SF3B1	100	93.272	ENSPFOG00000000073	sf3b1	99	93.272	Poecilia_formosa
ENSCPOG00000009353	SF3B1	100	93.344	ENSPLAG00000002293	sf3b1	99	93.344	Poecilia_latipinna
ENSCPOG00000009353	SF3B1	100	93.344	ENSPMEG00000000446	sf3b1	97	93.344	Poecilia_mexicana
ENSCPOG00000009353	SF3B1	100	93.420	ENSPREG00000019652	sf3b1	99	93.420	Poecilia_reticulata
ENSCPOG00000009353	SF3B1	100	98.814	ENSPPYG00000013044	SF3B1	96	98.814	Pongo_abelii
ENSCPOG00000009353	SF3B1	100	99.845	ENSPCAG00000009292	SF3B1	99	99.845	Procavia_capensis
ENSCPOG00000009353	SF3B1	100	99.923	ENSPCOG00000024074	SF3B1	99	99.923	Propithecus_coquereli
ENSCPOG00000009353	SF3B1	100	100.000	ENSPVAG00000008302	SF3B1	99	100.000	Pteropus_vampyrus
ENSCPOG00000009353	SF3B1	100	92.802	ENSPNYG00000014939	sf3b1	99	92.649	Pundamilia_nyererei
ENSCPOG00000009353	SF3B1	100	93.951	ENSPNAG00000008288	sf3b1	99	93.951	Pygocentrus_nattereri
ENSCPOG00000009353	SF3B1	100	100.000	ENSRNOG00000013516	Sf3b1	99	100.000	Rattus_norvegicus
ENSCPOG00000009353	SF3B1	100	96.445	ENSRBIG00000026096	SF3B1	99	96.448	Rhinopithecus_bieti
ENSCPOG00000009353	SF3B1	100	100.000	ENSRROG00000031308	SF3B1	99	100.000	Rhinopithecus_roxellana
ENSCPOG00000009353	SF3B1	100	100.000	ENSSBOG00000020080	SF3B1	99	100.000	Saimiri_boliviensis_boliviensis
ENSCPOG00000009353	SF3B1	100	99.304	ENSSHAG00000017564	SF3B1	99	99.304	Sarcophilus_harrisii
ENSCPOG00000009353	SF3B1	100	94.568	ENSSFOG00015021535	sf3b1	99	94.721	Scleropages_formosus
ENSCPOG00000009353	SF3B1	99	92.901	ENSSMAG00000013977	sf3b1	98	92.748	Scophthalmus_maximus
ENSCPOG00000009353	SF3B1	100	93.338	ENSSDUG00000017422	sf3b1	99	93.338	Seriola_dumerili
ENSCPOG00000009353	SF3B1	100	93.262	ENSSLDG00000019495	sf3b1	99	93.262	Seriola_lalandi_dorsalis
ENSCPOG00000009353	SF3B1	77	100.000	ENSSARG00000007016	SF3B1	76	100.000	Sorex_araneus
ENSCPOG00000009353	SF3B1	100	99.073	ENSSPUG00000000410	SF3B1	99	99.073	Sphenodon_punctatus
ENSCPOG00000009353	SF3B1	100	93.645	ENSSPAG00000010451	sf3b1	98	93.645	Stegastes_partitus
ENSCPOG00000009353	SF3B1	91	99.576	ENSSSCG00000016075	SF3B1	100	100.000	Sus_scrofa
ENSCPOG00000009353	SF3B1	100	99.304	ENSTGUG00000010553	SF3B1	99	99.304	Taeniopygia_guttata
ENSCPOG00000009353	SF3B1	100	93.415	ENSTRUG00000015534	sf3b1	99	93.262	Takifugu_rubripes
ENSCPOG00000009353	SF3B1	88	100.000	ENSTBEG00000008714	SF3B1	92	100.000	Tupaia_belangeri
ENSCPOG00000009353	SF3B1	92	94.185	ENSTTRG00000003414	SF3B1	92	94.185	Tursiops_truncatus
ENSCPOG00000009353	SF3B1	94	95.847	ENSUAMG00000018506	SF3B1	99	99.190	Ursus_americanus
ENSCPOG00000009353	SF3B1	100	100.000	ENSUMAG00000020945	SF3B1	99	100.000	Ursus_maritimus
ENSCPOG00000009353	SF3B1	100	91.808	ENSVPAG00000005798	SF3B1	99	91.808	Vicugna_pacos
ENSCPOG00000009353	SF3B1	100	100.000	ENSVVUG00000025948	SF3B1	94	100.000	Vulpes_vulpes
ENSCPOG00000009353	SF3B1	100	96.754	ENSXETG00000013339	sf3b1	99	96.754	Xenopus_tropicalis
ENSCPOG00000009353	SF3B1	100	89.831	ENSXCOG00000018086	sf3b1	99	89.716	Xiphophorus_couchianus
ENSCPOG00000009353	SF3B1	100	93.344	ENSXMAG00000007369	sf3b1	99	93.643	Xiphophorus_maculatus