EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCPOG00000009956 (Gene tree)
Gene ID: 100724177
Gene Symbol: DDB1
Alias: -
Full Name: damage specific DNA binding protein 1
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Plus strand
Length: 22480 bases
Position: chrDS562920.1:9848688-9871167
Accession: 100724177
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000027409	CPSF_A	PF03178.15	3e-86	1	1
ENSCPOP00000008935	CPSF_A	PF03178.15	5e-81	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000010046	DDB1-202	3351	-	ENSCPOP00000008935	1116 (aa)	-	H0VFS4
ENSCPOT00000045182	DDB1-201	4229	XM_003465950	ENSCPOP00000027409	1140 (aa)	XP_003465998	A0A286XPJ3

Gene Model

Click here to download ENSCPOG00000009956's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000009956's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000009956	DDB1	100	99.123	ENSG00000167986	DDB1	100	99.315	Homo_sapiens
ENSCPOG00000009956	DDB1	98	91.465	ENSAPOG00000005036	ddb1	99	91.429	Acanthochromis_polyacanthus
ENSCPOG00000009956	DDB1	100	99.211	ENSAMEG00000016518	DDB1	100	99.211	Ailuropoda_melanoleuca
ENSCPOG00000009956	DDB1	86	91.531	ENSACIG00000020624	ddb1	99	91.531	Amphilophus_citrinellus
ENSCPOG00000009956	DDB1	100	91.140	ENSAOCG00000003066	ddb1	100	91.140	Amphiprion_ocellaris
ENSCPOG00000009956	DDB1	100	91.228	ENSAPEG00000000092	ddb1	100	91.228	Amphiprion_percula
ENSCPOG00000009956	DDB1	94	91.442	ENSATEG00000020571	ddb1	97	91.442	Anabas_testudineus
ENSCPOG00000009956	DDB1	98	95.911	ENSAPLG00000007174	DDB1	99	95.911	Anas_platyrhynchos
ENSCPOG00000009956	DDB1	100	96.667	ENSACAG00000017758	DDB1	100	96.667	Anolis_carolinensis
ENSCPOG00000009956	DDB1	100	99.123	ENSANAG00000021878	DDB1	100	99.123	Aotus_nancymaae
ENSCPOG00000009956	DDB1	100	91.316	ENSACLG00000012401	ddb1	100	91.316	Astatotilapia_calliptera
ENSCPOG00000009956	DDB1	100	99.035	ENSBTAG00000021569	DDB1	93	99.035	Bos_taurus
ENSCPOG00000009956	DDB1	100	37.040	WBGene00010890	ddb-1	100	36.775	Caenorhabditis_elegans
ENSCPOG00000009956	DDB1	100	99.123	ENSCJAG00000019319	DDB1	100	99.123	Callithrix_jacchus
ENSCPOG00000009956	DDB1	100	99.211	ENSCAFG00000016264	DDB1	100	99.211	Canis_familiaris
ENSCPOG00000009956	DDB1	94	98.977	ENSCAFG00020012722	DDB1	99	98.977	Canis_lupus_dingo
ENSCPOG00000009956	DDB1	100	99.035	ENSCHIG00000014969	DDB1	100	99.035	Capra_hircus
ENSCPOG00000009956	DDB1	100	98.684	ENSTSYG00000008027	DDB1	100	98.684	Carlito_syrichta
ENSCPOG00000009956	DDB1	99	99.100	ENSCAPG00000010786	DDB1	100	100.000	Cavia_aperea
ENSCPOG00000009956	DDB1	100	99.123	ENSCCAG00000035883	DDB1	100	99.123	Cebus_capucinus
ENSCPOG00000009956	DDB1	100	96.615	ENSCATG00000044495	DDB1	100	96.615	Cercocebus_atys
ENSCPOG00000009956	DDB1	100	99.825	ENSCLAG00000004126	DDB1	100	99.825	Chinchilla_lanigera
ENSCPOG00000009956	DDB1	100	99.123	ENSCSAG00000006392	DDB1	100	99.123	Chlorocebus_sabaeus
ENSCPOG00000009956	DDB1	88	92.235	ENSCHOG00000011377	DDB1	90	92.235	Choloepus_hoffmanni
ENSCPOG00000009956	DDB1	100	97.193	ENSCPBG00000017728	DDB1	100	97.193	Chrysemys_picta_bellii
ENSCPOG00000009956	DDB1	100	61.806	ENSCING00000007437	-	100	61.719	Ciona_intestinalis
ENSCPOG00000009956	DDB1	94	60.276	ENSCSAVG00000004783	-	100	60.276	Ciona_savignyi
ENSCPOG00000009956	DDB1	100	99.123	ENSCANG00000019948	DDB1	100	99.123	Colobus_angolensis_palliatus
ENSCPOG00000009956	DDB1	100	99.298	ENSCGRG00001016599	Ddb1	100	99.298	Cricetulus_griseus_chok1gshd
ENSCPOG00000009956	DDB1	100	99.298	ENSCGRG00000013427	Ddb1	100	99.298	Cricetulus_griseus_crigri
ENSCPOG00000009956	DDB1	93	91.046	ENSCSEG00000012499	ddb1	99	89.474	Cynoglossus_semilaevis
ENSCPOG00000009956	DDB1	94	91.146	ENSCVAG00000019531	ddb1	99	91.146	Cyprinodon_variegatus
ENSCPOG00000009956	DDB1	100	88.045	ENSDARG00000074431	ddb1	100	88.297	Danio_rerio
ENSCPOG00000009956	DDB1	94	98.791	ENSDNOG00000014884	DDB1	97	98.791	Dasypus_novemcinctus
ENSCPOG00000009956	DDB1	84	99.095	ENSDORG00000000127	Ddb1	100	99.095	Dipodomys_ordii
ENSCPOG00000009956	DDB1	100	60.961	FBgn0260962	pic	100	60.752	Drosophila_melanogaster
ENSCPOG00000009956	DDB1	71	99.213	ENSETEG00000001053	-	71	99.213	Echinops_telfairi
ENSCPOG00000009956	DDB1	78	84.702	ENSEBUG00000014593	ddb1	97	84.702	Eptatretus_burgeri
ENSCPOG00000009956	DDB1	100	99.035	ENSEASG00005008184	DDB1	100	99.035	Equus_asinus_asinus
ENSCPOG00000009956	DDB1	100	98.947	ENSECAG00000012136	DDB1	100	98.947	Equus_caballus
ENSCPOG00000009956	DDB1	85	96.970	ENSEEUG00000003194	DDB1	85	96.970	Erinaceus_europaeus
ENSCPOG00000009956	DDB1	100	91.053	ENSELUG00000023868	ddb1	100	91.053	Esox_lucius
ENSCPOG00000009956	DDB1	100	99.211	ENSFCAG00000029716	DDB1	100	99.211	Felis_catus
ENSCPOG00000009956	DDB1	100	96.325	ENSFALG00000011981	DDB1	100	96.325	Ficedula_albicollis
ENSCPOG00000009956	DDB1	100	99.211	ENSFDAG00000005128	DDB1	100	99.211	Fukomys_damarensis
ENSCPOG00000009956	DDB1	90	92.800	ENSFHEG00000022133	ddb1	98	92.800	Fundulus_heteroclitus
ENSCPOG00000009956	DDB1	79	94.314	ENSGMOG00000019386	ddb1	94	94.314	Gadus_morhua
ENSCPOG00000009956	DDB1	100	96.491	ENSGALG00000042333	DDB1	100	96.491	Gallus_gallus
ENSCPOG00000009956	DDB1	94	91.146	ENSGAFG00000013142	ddb1	99	91.146	Gambusia_affinis
ENSCPOG00000009956	DDB1	96	90.284	ENSGACG00000017182	ddb1	100	90.284	Gasterosteus_aculeatus
ENSCPOG00000009956	DDB1	95	97.140	ENSGAGG00000014124	DDB1	100	97.140	Gopherus_agassizii
ENSCPOG00000009956	DDB1	100	99.123	ENSGGOG00000004052	DDB1	100	99.123	Gorilla_gorilla
ENSCPOG00000009956	DDB1	100	91.316	ENSHBUG00000008873	ddb1	100	91.316	Haplochromis_burtoni
ENSCPOG00000009956	DDB1	100	99.123	ENSHGLG00000018430	DDB1	100	99.123	Heterocephalus_glaber_female
ENSCPOG00000009956	DDB1	100	98.070	ENSHGLG00100014475	DDB1	100	98.070	Heterocephalus_glaber_male
ENSCPOG00000009956	DDB1	94	90.892	ENSHCOG00000018670	ddb1	98	90.892	Hippocampus_comes
ENSCPOG00000009956	DDB1	100	90.526	ENSIPUG00000005612	DDB1	100	90.526	Ictalurus_punctatus
ENSCPOG00000009956	DDB1	100	99.123	ENSSTOG00000007552	DDB1	100	99.123	Ictidomys_tridecemlineatus
ENSCPOG00000009956	DDB1	100	98.947	ENSJJAG00000017769	Ddb1	100	98.947	Jaculus_jaculus
ENSCPOG00000009956	DDB1	94	91.053	ENSKMAG00000002315	ddb1	99	91.053	Kryptolebias_marmoratus
ENSCPOG00000009956	DDB1	85	91.399	ENSLBEG00000017065	ddb1	99	91.399	Labrus_bergylta
ENSCPOG00000009956	DDB1	100	93.170	ENSLACG00000017611	DDB1	100	93.170	Latimeria_chalumnae
ENSCPOG00000009956	DDB1	93	82.540	ENSLOCG00000000012	ddb1	100	82.540	Lepisosteus_oculatus
ENSCPOG00000009956	DDB1	100	98.947	ENSLAFG00000011513	DDB1	100	98.947	Loxodonta_africana
ENSCPOG00000009956	DDB1	100	99.123	ENSMFAG00000042035	DDB1	100	99.123	Macaca_fascicularis
ENSCPOG00000009956	DDB1	99	99.116	ENSMMUG00000002691	DDB1	100	98.592	Macaca_mulatta
ENSCPOG00000009956	DDB1	100	99.123	ENSMNEG00000031559	DDB1	100	99.123	Macaca_nemestrina
ENSCPOG00000009956	DDB1	100	99.123	ENSMLEG00000044136	DDB1	100	99.123	Mandrillus_leucophaeus
ENSCPOG00000009956	DDB1	100	91.316	ENSMAMG00000014372	ddb1	100	91.316	Mastacembelus_armatus
ENSCPOG00000009956	DDB1	100	91.228	ENSMZEG00005013835	ddb1	100	91.228	Maylandia_zebra
ENSCPOG00000009956	DDB1	94	95.810	ENSMGAG00000004990	DDB1	100	95.810	Meleagris_gallopavo
ENSCPOG00000009956	DDB1	100	99.298	ENSMAUG00000012926	Ddb1	100	99.298	Mesocricetus_auratus
ENSCPOG00000009956	DDB1	100	99.123	ENSMICG00000013703	DDB1	100	99.123	Microcebus_murinus
ENSCPOG00000009956	DDB1	100	99.211	ENSMOCG00000020499	Ddb1	100	99.211	Microtus_ochrogaster
ENSCPOG00000009956	DDB1	86	91.531	ENSMMOG00000001758	ddb1	99	91.531	Mola_mola
ENSCPOG00000009956	DDB1	100	88.754	ENSMODG00000020353	DDB1	100	88.754	Monodelphis_domestica
ENSCPOG00000009956	DDB1	100	91.316	ENSMALG00000014071	ddb1	100	91.316	Monopterus_albus
ENSCPOG00000009956	DDB1	100	99.211	MGP_CAROLIEiJ_G0022695	Ddb1	100	99.211	Mus_caroli
ENSCPOG00000009956	DDB1	100	99.035	ENSMUSG00000024740	Ddb1	100	99.035	Mus_musculus
ENSCPOG00000009956	DDB1	100	99.211	MGP_PahariEiJ_G0014189	Ddb1	100	99.211	Mus_pahari
ENSCPOG00000009956	DDB1	100	99.123	MGP_SPRETEiJ_G0023609	Ddb1	100	99.123	Mus_spretus
ENSCPOG00000009956	DDB1	100	95.877	ENSMPUG00000014200	DDB1	100	95.877	Mustela_putorius_furo
ENSCPOG00000009956	DDB1	100	98.772	ENSMLUG00000013232	DDB1	100	98.772	Myotis_lucifugus
ENSCPOG00000009956	DDB1	100	99.035	ENSNGAG00000009384	Ddb1	100	99.035	Nannospalax_galili
ENSCPOG00000009956	DDB1	100	91.404	ENSNBRG00000019581	ddb1	100	91.404	Neolamprologus_brichardi
ENSCPOG00000009956	DDB1	100	96.007	ENSNLEG00000002022	DDB1	100	96.007	Nomascus_leucogenys
ENSCPOG00000009956	DDB1	90	99.296	ENSMEUG00000001099	DDB1	92	99.296	Notamacropus_eugenii
ENSCPOG00000009956	DDB1	90	90.495	ENSOPRG00000008254	DDB1	90	90.495	Ochotona_princeps
ENSCPOG00000009956	DDB1	100	99.474	ENSODEG00000002419	DDB1	100	99.474	Octodon_degus
ENSCPOG00000009956	DDB1	100	91.316	ENSONIG00000005804	ddb1	100	91.316	Oreochromis_niloticus
ENSCPOG00000009956	DDB1	91	97.578	ENSOANG00000004897	DDB1	100	97.578	Ornithorhynchus_anatinus
ENSCPOG00000009956	DDB1	100	99.123	ENSOCUG00000001667	DDB1	100	99.123	Oryctolagus_cuniculus
ENSCPOG00000009956	DDB1	96	89.643	ENSORLG00000001399	ddb1	98	90.874	Oryzias_latipes
ENSCPOG00000009956	DDB1	96	89.551	ENSORLG00020001277	ddb1	97	89.551	Oryzias_latipes_hni
ENSCPOG00000009956	DDB1	94	90.698	ENSORLG00015002080	ddb1	99	90.698	Oryzias_latipes_hsok
ENSCPOG00000009956	DDB1	96	89.517	ENSOMEG00000006181	ddb1	99	89.517	Oryzias_melastigma
ENSCPOG00000009956	DDB1	100	98.947	ENSOGAG00000016103	DDB1	100	98.947	Otolemur_garnettii
ENSCPOG00000009956	DDB1	99	99.020	ENSOARG00000011716	DDB1	98	99.020	Ovis_aries
ENSCPOG00000009956	DDB1	100	99.123	ENSPPAG00000035343	DDB1	100	99.123	Pan_paniscus
ENSCPOG00000009956	DDB1	100	99.211	ENSPPRG00000013300	DDB1	100	99.211	Panthera_pardus
ENSCPOG00000009956	DDB1	98	99.196	ENSPTIG00000006909	DDB1	98	99.196	Panthera_tigris_altaica
ENSCPOG00000009956	DDB1	100	99.123	ENSPTRG00000003737	DDB1	100	99.123	Pan_troglodytes
ENSCPOG00000009956	DDB1	100	99.123	ENSPANG00000000242	DDB1	100	99.123	Papio_anubis
ENSCPOG00000009956	DDB1	94	91.146	ENSPKIG00000019213	ddb1	94	91.146	Paramormyrops_kingsleyae
ENSCPOG00000009956	DDB1	98	96.619	ENSPSIG00000013275	DDB1	100	96.619	Pelodiscus_sinensis
ENSCPOG00000009956	DDB1	86	91.224	ENSPMGG00000021179	ddb1	99	91.224	Periophthalmus_magnuspinnatus
ENSCPOG00000009956	DDB1	100	99.298	ENSPEMG00000012241	Ddb1	100	99.298	Peromyscus_maniculatus_bairdii
ENSCPOG00000009956	DDB1	89	86.837	ENSPMAG00000008479	ddb1	100	86.837	Petromyzon_marinus
ENSCPOG00000009956	DDB1	100	98.596	ENSPCIG00000002643	DDB1	100	98.596	Phascolarctos_cinereus
ENSCPOG00000009956	DDB1	100	90.710	ENSPFOG00000002768	ddb1	100	90.710	Poecilia_formosa
ENSCPOG00000009956	DDB1	100	90.526	ENSPLAG00000017227	ddb1	100	90.526	Poecilia_latipinna
ENSCPOG00000009956	DDB1	100	90.526	ENSPMEG00000011398	ddb1	100	90.526	Poecilia_mexicana
ENSCPOG00000009956	DDB1	94	91.070	ENSPREG00000004440	ddb1	98	91.070	Poecilia_reticulata
ENSCPOG00000009956	DDB1	100	94.241	ENSPPYG00000003193	DDB1	100	94.241	Pongo_abelii
ENSCPOG00000009956	DDB1	85	98.955	ENSPCAG00000011040	DDB1	85	98.955	Procavia_capensis
ENSCPOG00000009956	DDB1	100	97.548	ENSPCOG00000015176	DDB1	100	97.548	Propithecus_coquereli
ENSCPOG00000009956	DDB1	100	99.035	ENSPVAG00000003847	DDB1	100	99.035	Pteropus_vampyrus
ENSCPOG00000009956	DDB1	94	91.053	ENSPNAG00000006635	ddb1	97	91.053	Pygocentrus_nattereri
ENSCPOG00000009956	DDB1	100	99.211	ENSRNOG00000020715	Ddb1	100	99.211	Rattus_norvegicus
ENSCPOG00000009956	DDB1	100	99.123	ENSRBIG00000033611	DDB1	100	99.123	Rhinopithecus_bieti
ENSCPOG00000009956	DDB1	100	99.123	ENSRROG00000041407	DDB1	100	99.123	Rhinopithecus_roxellana
ENSCPOG00000009956	DDB1	100	99.035	ENSSBOG00000019775	DDB1	100	99.035	Saimiri_boliviensis_boliviensis
ENSCPOG00000009956	DDB1	94	96.355	ENSSHAG00000011600	DDB1	100	96.355	Sarcophilus_harrisii
ENSCPOG00000009956	DDB1	94	91.450	ENSSFOG00015011151	ddb1	97	91.450	Scleropages_formosus
ENSCPOG00000009956	DDB1	100	90.877	ENSSMAG00000009495	ddb1	100	90.877	Scophthalmus_maximus
ENSCPOG00000009956	DDB1	100	91.228	ENSSDUG00000004642	ddb1	100	91.228	Seriola_dumerili
ENSCPOG00000009956	DDB1	100	91.228	ENSSLDG00000015804	ddb1	100	91.228	Seriola_lalandi_dorsalis
ENSCPOG00000009956	DDB1	71	100.000	ENSSARG00000003290	-	72	100.000	Sorex_araneus
ENSCPOG00000009956	DDB1	100	97.193	ENSSPUG00000019338	DDB1	100	97.193	Sphenodon_punctatus
ENSCPOG00000009956	DDB1	94	91.349	ENSSPAG00000009888	ddb1	99	91.349	Stegastes_partitus
ENSCPOG00000009956	DDB1	100	98.158	ENSSSCG00000013094	DDB1	100	98.158	Sus_scrofa
ENSCPOG00000009956	DDB1	100	96.491	ENSTGUG00000006414	DDB1	100	96.491	Taeniopygia_guttata
ENSCPOG00000009956	DDB1	94	90.121	ENSTRUG00000016682	ddb1	98	90.121	Takifugu_rubripes
ENSCPOG00000009956	DDB1	88	85.030	ENSTNIG00000009565	ddb1	99	85.030	Tetraodon_nigroviridis
ENSCPOG00000009956	DDB1	92	94.386	ENSTTRG00000011055	DDB1	94	94.386	Tursiops_truncatus
ENSCPOG00000009956	DDB1	94	98.977	ENSUAMG00000017793	DDB1	93	98.977	Ursus_americanus
ENSCPOG00000009956	DDB1	94	98.977	ENSUMAG00000011788	DDB1	98	98.977	Ursus_maritimus
ENSCPOG00000009956	DDB1	90	99.020	ENSVPAG00000007963	DDB1	92	99.020	Vicugna_pacos
ENSCPOG00000009956	DDB1	100	99.123	ENSVVUG00000004987	DDB1	100	99.123	Vulpes_vulpes
ENSCPOG00000009956	DDB1	100	93.094	ENSXETG00000008820	ddb1	100	93.094	Xenopus_tropicalis
ENSCPOG00000009956	DDB1	86	91.020	ENSXCOG00000013956	ddb1	99	91.020	Xiphophorus_couchianus
ENSCPOG00000009956	DDB1	94	90.960	ENSXMAG00000000022	ddb1	99	90.960	Xiphophorus_maculatus