EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCPOG00000011448 (Gene tree)
Gene ID: 100715105
Gene Symbol: CPSF1
Alias: CPSF160
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Minus strand
Length: 14178 bases
Position: chrDS562950.1:3520004-3534181
Accession: 100715105
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000010292	CPSF_A	PF03178.15	7.9e-92	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000011554	CPSF1-201	4290	XM_003463690	ENSCPOP00000010292	1429 (aa)	XP_003463738	H0VJ73

Gene Model

Click here to download ENSCPOG00000011448's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000011448's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000011448	CPSF1	100	94.945	ENSG00000071894	CPSF1	100	94.945	Homo_sapiens
ENSCPOG00000011448	CPSF1	100	76.892	ENSAPOG00000019621	cpsf1	100	77.027	Acanthochromis_polyacanthus
ENSCPOG00000011448	CPSF1	97	93.143	ENSAMEG00000005557	CPSF1	100	93.143	Ailuropoda_melanoleuca
ENSCPOG00000011448	CPSF1	100	77.163	ENSACIG00000006112	cpsf1	100	77.509	Amphilophus_citrinellus
ENSCPOG00000011448	CPSF1	100	78.114	ENSAOCG00000007120	cpsf1	100	78.321	Amphiprion_ocellaris
ENSCPOG00000011448	CPSF1	100	78.581	ENSAPEG00000005755	cpsf1	100	78.719	Amphiprion_percula
ENSCPOG00000011448	CPSF1	100	76.669	ENSATEG00000011097	cpsf1	100	77.006	Anabas_testudineus
ENSCPOG00000011448	CPSF1	93	79.762	ENSACAG00000009655	CPSF1	100	79.762	Anolis_carolinensis
ENSCPOG00000011448	CPSF1	100	94.941	ENSANAG00000036514	CPSF1	100	94.941	Aotus_nancymaae
ENSCPOG00000011448	CPSF1	100	76.332	ENSACLG00000012231	cpsf1	99	77.762	Astatotilapia_calliptera
ENSCPOG00000011448	CPSF1	100	72.702	ENSAMXG00000008485	cpsf1	100	72.771	Astyanax_mexicanus
ENSCPOG00000011448	CPSF1	100	93.061	ENSBTAG00000008355	CPSF1	100	93.061	Bos_taurus
ENSCPOG00000011448	CPSF1	100	31.776	WBGene00022301	cpsf-1	100	40.449	Caenorhabditis_elegans
ENSCPOG00000011448	CPSF1	100	94.872	ENSCJAG00000021421	CPSF1	100	94.872	Callithrix_jacchus
ENSCPOG00000011448	CPSF1	97	94.568	ENSCAFG00000001600	CPSF1	100	96.658	Canis_familiaris
ENSCPOG00000011448	CPSF1	100	94.810	ENSCAFG00020020821	CPSF1	100	94.810	Canis_lupus_dingo
ENSCPOG00000011448	CPSF1	100	89.390	ENSCHIG00000015833	CPSF1	100	89.390	Capra_hircus
ENSCPOG00000011448	CPSF1	100	95.773	ENSTSYG00000028560	CPSF1	100	95.773	Carlito_syrichta
ENSCPOG00000011448	CPSF1	97	99.349	ENSCAPG00000014921	CPSF1	99	99.349	Cavia_aperea
ENSCPOG00000011448	CPSF1	100	95.080	ENSCCAG00000037658	CPSF1	100	95.080	Cebus_capucinus
ENSCPOG00000011448	CPSF1	100	94.802	ENSCATG00000037234	CPSF1	100	94.802	Cercocebus_atys
ENSCPOG00000011448	CPSF1	100	97.642	ENSCLAG00000012166	CPSF1	100	97.642	Chinchilla_lanigera
ENSCPOG00000011448	CPSF1	100	94.941	ENSCSAG00000008502	CPSF1	100	94.941	Chlorocebus_sabaeus
ENSCPOG00000011448	CPSF1	99	85.864	ENSCPBG00000018910	CPSF1	96	85.864	Chrysemys_picta_bellii
ENSCPOG00000011448	CPSF1	96	48.172	ENSCING00000000514	-	100	48.029	Ciona_intestinalis
ENSCPOG00000011448	CPSF1	99	47.734	ENSCSAVG00000002293	-	98	49.765	Ciona_savignyi
ENSCPOG00000011448	CPSF1	99	89.161	ENSCANG00000032760	CPSF1	100	89.352	Colobus_angolensis_palliatus
ENSCPOG00000011448	CPSF1	100	95.700	ENSCGRG00001016344	Cpsf1	100	95.700	Cricetulus_griseus_chok1gshd
ENSCPOG00000011448	CPSF1	100	93.551	ENSCGRG00000003118	Cpsf1	100	93.551	Cricetulus_griseus_crigri
ENSCPOG00000011448	CPSF1	100	77.415	ENSCSEG00000013464	cpsf1	100	77.623	Cynoglossus_semilaevis
ENSCPOG00000011448	CPSF1	86	77.045	ENSCVAG00000014059	cpsf1	100	75.463	Cyprinodon_variegatus
ENSCPOG00000011448	CPSF1	100	78.542	ENSDARG00000034178	cpsf1	100	78.611	Danio_rerio
ENSCPOG00000011448	CPSF1	56	95.942	ENSDNOG00000043654	CPSF1	94	95.942	Dasypus_novemcinctus
ENSCPOG00000011448	CPSF1	97	94.839	ENSDORG00000006278	Cpsf1	99	94.839	Dipodomys_ordii
ENSCPOG00000011448	CPSF1	100	43.968	FBgn0024698	Cpsf160	100	44.064	Drosophila_melanogaster
ENSCPOG00000011448	CPSF1	80	97.987	ENSETEG00000006022	CPSF1	83	97.987	Echinops_telfairi
ENSCPOG00000011448	CPSF1	100	95.363	ENSEASG00005010774	CPSF1	100	95.363	Equus_asinus_asinus
ENSCPOG00000011448	CPSF1	100	95.433	ENSECAG00000022209	CPSF1	100	95.433	Equus_caballus
ENSCPOG00000011448	CPSF1	100	93.084	ENSEEUG00000000471	CPSF1	100	93.084	Erinaceus_europaeus
ENSCPOG00000011448	CPSF1	100	76.849	ENSELUG00000012271	cpsf1	100	77.397	Esox_lucius
ENSCPOG00000011448	CPSF1	100	97.365	ENSFDAG00000016060	CPSF1	100	97.365	Fukomys_damarensis
ENSCPOG00000011448	CPSF1	100	75.551	ENSFHEG00000016801	cpsf1	100	75.620	Fundulus_heteroclitus
ENSCPOG00000011448	CPSF1	100	76.791	ENSGMOG00000000796	cpsf1	100	76.997	Gadus_morhua
ENSCPOG00000011448	CPSF1	95	83.929	ENSGAFG00000018890	cpsf1	100	83.929	Gambusia_affinis
ENSCPOG00000011448	CPSF1	100	77.310	ENSGACG00000008703	cpsf1	100	77.304	Gasterosteus_aculeatus
ENSCPOG00000011448	CPSF1	100	82.089	ENSGAGG00000004276	CPSF1	97	86.746	Gopherus_agassizii
ENSCPOG00000011448	CPSF1	100	94.868	ENSGGOG00000016185	CPSF1	100	94.868	Gorilla_gorilla
ENSCPOG00000011448	CPSF1	100	78.547	ENSHBUG00000018900	cpsf1	100	78.685	Haplochromis_burtoni
ENSCPOG00000011448	CPSF1	100	97.434	ENSHGLG00000016139	CPSF1	100	97.434	Heterocephalus_glaber_female
ENSCPOG00000011448	CPSF1	100	97.365	ENSHGLG00100009750	CPSF1	100	97.365	Heterocephalus_glaber_male
ENSCPOG00000011448	CPSF1	100	76.136	ENSHCOG00000018509	cpsf1	100	76.255	Hippocampus_comes
ENSCPOG00000011448	CPSF1	100	75.017	ENSIPUG00000011259	cpsf1	100	75.017	Ictalurus_punctatus
ENSCPOG00000011448	CPSF1	97	95.286	ENSSTOG00000009957	CPSF1	99	95.286	Ictidomys_tridecemlineatus
ENSCPOG00000011448	CPSF1	100	95.562	ENSJJAG00000023002	Cpsf1	100	95.562	Jaculus_jaculus
ENSCPOG00000011448	CPSF1	91	85.580	ENSKMAG00000001940	cpsf1	99	85.580	Kryptolebias_marmoratus
ENSCPOG00000011448	CPSF1	100	75.934	ENSLBEG00000003601	cpsf1	100	76.303	Labrus_bergylta
ENSCPOG00000011448	CPSF1	88	81.731	ENSLACG00000000233	CPSF1	92	81.731	Latimeria_chalumnae
ENSCPOG00000011448	CPSF1	100	76.743	ENSLOCG00000008484	cpsf1	100	77.019	Lepisosteus_oculatus
ENSCPOG00000011448	CPSF1	97	93.491	ENSLAFG00000022601	CPSF1	100	93.491	Loxodonta_africana
ENSCPOG00000011448	CPSF1	100	94.802	ENSMFAG00000037013	CPSF1	99	96.306	Macaca_fascicularis
ENSCPOG00000011448	CPSF1	100	94.872	ENSMMUG00000007380	CPSF1	100	94.872	Macaca_mulatta
ENSCPOG00000011448	CPSF1	97	94.767	ENSMNEG00000043564	CPSF1	100	94.767	Macaca_nemestrina
ENSCPOG00000011448	CPSF1	100	94.802	ENSMLEG00000043010	CPSF1	100	94.802	Mandrillus_leucophaeus
ENSCPOG00000011448	CPSF1	100	77.095	ENSMAMG00000003803	cpsf1	100	77.230	Mastacembelus_armatus
ENSCPOG00000011448	CPSF1	100	76.471	ENSMZEG00005001168	cpsf1	100	76.609	Maylandia_zebra
ENSCPOG00000011448	CPSF1	100	95.423	ENSMAUG00000003601	Cpsf1	100	95.423	Mesocricetus_auratus
ENSCPOG00000011448	CPSF1	100	95.423	ENSMICG00000015767	CPSF1	100	95.423	Microcebus_murinus
ENSCPOG00000011448	CPSF1	100	95.770	ENSMOCG00000022758	Cpsf1	100	95.770	Microtus_ochrogaster
ENSCPOG00000011448	CPSF1	100	77.732	ENSMMOG00000021245	cpsf1	100	77.870	Mola_mola
ENSCPOG00000011448	CPSF1	100	91.586	ENSMODG00000010755	CPSF1	100	91.586	Monodelphis_domestica
ENSCPOG00000011448	CPSF1	100	76.522	ENSMALG00000020545	cpsf1	100	76.658	Monopterus_albus
ENSCPOG00000011448	CPSF1	100	96.047	MGP_CAROLIEiJ_G0019936	Cpsf1	100	96.047	Mus_caroli
ENSCPOG00000011448	CPSF1	100	95.908	ENSMUSG00000034022	Cpsf1	100	95.908	Mus_musculus
ENSCPOG00000011448	CPSF1	100	95.978	MGP_PahariEiJ_G0019946	Cpsf1	100	95.978	Mus_pahari
ENSCPOG00000011448	CPSF1	100	95.978	MGP_SPRETEiJ_G0020839	Cpsf1	100	95.978	Mus_spretus
ENSCPOG00000011448	CPSF1	94	94.647	ENSMPUG00000006419	CPSF1	93	94.647	Mustela_putorius_furo
ENSCPOG00000011448	CPSF1	100	95.215	ENSNGAG00000022460	Cpsf1	100	95.215	Nannospalax_galili
ENSCPOG00000011448	CPSF1	100	73.582	ENSNBRG00000000813	cpsf1	100	73.582	Neolamprologus_brichardi
ENSCPOG00000011448	CPSF1	86	82.237	ENSNLEG00000010633	-	100	88.889	Nomascus_leucogenys
ENSCPOG00000011448	CPSF1	82	98.256	ENSMEUG00000014922	CPSF1	85	98.256	Notamacropus_eugenii
ENSCPOG00000011448	CPSF1	61	96.429	ENSOPRG00000004693	-	71	96.429	Ochotona_princeps
ENSCPOG00000011448	CPSF1	100	97.642	ENSODEG00000013995	CPSF1	100	97.642	Octodon_degus
ENSCPOG00000011448	CPSF1	100	78.893	ENSONIG00000007676	cpsf1	100	79.031	Oreochromis_niloticus
ENSCPOG00000011448	CPSF1	59	92.143	ENSOANG00000010716	CPSF1	88	92.143	Ornithorhynchus_anatinus
ENSCPOG00000011448	CPSF1	100	76.139	ENSORLG00000013544	cpsf1	92	86.831	Oryzias_latipes
ENSCPOG00000011448	CPSF1	100	76.275	ENSORLG00020021693	cpsf1	92	86.831	Oryzias_latipes_hni
ENSCPOG00000011448	CPSF1	100	76.207	ENSORLG00015009979	cpsf1	100	76.275	Oryzias_latipes_hsok
ENSCPOG00000011448	CPSF1	100	76.106	ENSOMEG00000011849	cpsf1	100	76.447	Oryzias_melastigma
ENSCPOG00000011448	CPSF1	100	95.357	ENSOGAG00000000315	CPSF1	100	95.357	Otolemur_garnettii
ENSCPOG00000011448	CPSF1	100	94.941	ENSPPAG00000019280	CPSF1	100	94.941	Pan_paniscus
ENSCPOG00000011448	CPSF1	100	93.324	ENSPTRG00000051253	-	100	93.324	Pan_troglodytes
ENSCPOG00000011448	CPSF1	100	94.941	ENSPTRG00000049288	-	100	94.941	Pan_troglodytes
ENSCPOG00000011448	CPSF1	97	94.624	ENSPANG00000015005	CPSF1	100	94.624	Papio_anubis
ENSCPOG00000011448	CPSF1	100	79.668	ENSPKIG00000002582	cpsf1	100	81.335	Paramormyrops_kingsleyae
ENSCPOG00000011448	CPSF1	100	91.517	ENSPCIG00000009035	CPSF1	100	91.517	Phascolarctos_cinereus
ENSCPOG00000011448	CPSF1	100	75.372	ENSPFOG00000012870	cpsf1	100	75.372	Poecilia_formosa
ENSCPOG00000011448	CPSF1	100	75.254	ENSPREG00000016307	cpsf1	100	75.254	Poecilia_reticulata
ENSCPOG00000011448	CPSF1	100	86.902	ENSPPYG00000018973	CPSF1	100	86.902	Pongo_abelii
ENSCPOG00000011448	CPSF1	91	95.170	ENSPCAG00000011541	CPSF1	94	95.170	Procavia_capensis
ENSCPOG00000011448	CPSF1	100	91.545	ENSPCOG00000020001	CPSF1	100	91.545	Propithecus_coquereli
ENSCPOG00000011448	CPSF1	90	99.143	ENSPVAG00000006761	CPSF1	91	99.143	Pteropus_vampyrus
ENSCPOG00000011448	CPSF1	100	77.527	ENSPNYG00000004906	cpsf1	100	77.664	Pundamilia_nyererei
ENSCPOG00000011448	CPSF1	100	73.982	ENSPNAG00000024395	cpsf1	100	73.982	Pygocentrus_nattereri
ENSCPOG00000011448	CPSF1	100	96.047	ENSRNOG00000030705	Cpsf1	100	96.047	Rattus_norvegicus
ENSCPOG00000011448	CPSF1	100	94.802	ENSRBIG00000044907	CPSF1	100	94.802	Rhinopithecus_bieti
ENSCPOG00000011448	CPSF1	100	94.733	ENSRROG00000044861	CPSF1	100	94.733	Rhinopithecus_roxellana
ENSCPOG00000011448	CPSF1	97	94.767	ENSSBOG00000027177	CPSF1	100	94.767	Saimiri_boliviensis_boliviensis
ENSCPOG00000011448	CPSF1	100	91.448	ENSSHAG00000006500	CPSF1	100	91.448	Sarcophilus_harrisii
ENSCPOG00000011448	CPSF1	100	77.029	ENSSFOG00015004606	cpsf1	99	80.956	Scleropages_formosus
ENSCPOG00000011448	CPSF1	100	76.861	ENSSMAG00000020547	cpsf1	100	76.928	Scophthalmus_maximus
ENSCPOG00000011448	CPSF1	100	78.162	ENSSDUG00000001100	cpsf1	100	78.507	Seriola_dumerili
ENSCPOG00000011448	CPSF1	100	78.285	ENSSLDG00000003619	cpsf1	100	78.423	Seriola_lalandi_dorsalis
ENSCPOG00000011448	CPSF1	90	100.000	ENSSARG00000003643	CPSF1	92	100.000	Sorex_araneus
ENSCPOG00000011448	CPSF1	96	85.591	ENSSPUG00000014396	CPSF1	100	85.591	Sphenodon_punctatus
ENSCPOG00000011448	CPSF1	100	76.944	ENSSPAG00000005349	cpsf1	100	77.079	Stegastes_partitus
ENSCPOG00000011448	CPSF1	100	93.910	ENSSSCG00000005906	CPSF1	100	93.910	Sus_scrofa
ENSCPOG00000011448	CPSF1	96	76.697	ENSTRUG00000013134	cpsf1	99	76.837	Takifugu_rubripes
ENSCPOG00000011448	CPSF1	100	77.404	ENSTNIG00000014027	cpsf1	100	77.473	Tetraodon_nigroviridis
ENSCPOG00000011448	CPSF1	77	85.714	ENSTBEG00000001756	CPSF1	91	85.714	Tupaia_belangeri
ENSCPOG00000011448	CPSF1	90	97.064	ENSTTRG00000001937	CPSF1	90	97.064	Tursiops_truncatus
ENSCPOG00000011448	CPSF1	97	94.853	ENSUAMG00000006476	CPSF1	98	94.853	Ursus_americanus
ENSCPOG00000011448	CPSF1	100	76.487	ENSXCOG00000003608	cpsf1	100	76.763	Xiphophorus_couchianus
ENSCPOG00000011448	CPSF1	100	75.967	ENSXMAG00000005798	cpsf1	100	76.174	Xiphophorus_maculatus