EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCPOG00000012290 (Gene tree)
Gene ID: 100735823
Gene Symbol: SF1
Alias: ZCCHC25|ZFM1|ZNF162
Full Name: splicing factor 1
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Minus strand
Length: 12896 bases
Position: chrDS562897.1:5614322-5627217
Accession: 100735823
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000022395	KH_1	PF00013.29	1.9e-07	1	1
ENSCPOP00000011053	KH_1	PF00013.29	2.4e-07	1	1
ENSCPOP00000018639	KH_1	PF00013.29	2.5e-07	1	1
ENSCPOP00000022395	zf-CCHC	PF00098.23	0.00013	1	1
ENSCPOP00000011053	zf-CCHC	PF00098.23	0.00016	1	1
ENSCPOP00000018639	zf-CCHC	PF00098.23	0.00016	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000022400	SF1-203	1911	-	ENSCPOP00000018639	636 (aa)	-	H0W6N5
ENSCPOT00000012406	SF1-202	3084	XM_003468420	ENSCPOP00000011053	627 (aa)	XP_003468468	H0VL36
ENSCPOT00000040664	SF1-201	3585	XM_005002960	ENSCPOP00000022395	537 (aa)	XP_005003017	A0A286XAD8

Gene Model

Click here to download ENSCPOG00000012290's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000012290's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000012290	SF1	68	81.551	ENSAPOG00000012341	sf1	59	76.596	Acanthochromis_polyacanthus
ENSCPOG00000012290	SF1	98	98.286	ENSAMEG00000017828	SF1	82	99.811	Ailuropoda_melanoleuca
ENSCPOG00000012290	SF1	58	84.196	ENSACIG00000016514	sf1	61	79.115	Amphilophus_citrinellus
ENSCPOG00000012290	SF1	68	81.551	ENSAOCG00000010934	sf1	59	76.794	Amphiprion_ocellaris
ENSCPOG00000012290	SF1	68	81.551	ENSAPEG00000009498	sf1	59	76.794	Amphiprion_percula
ENSCPOG00000012290	SF1	100	99.441	ENSANAG00000026664	-	98	99.362	Aotus_nancymaae
ENSCPOG00000012290	SF1	96	85.853	ENSANAG00000022607	-	99	86.288	Aotus_nancymaae
ENSCPOG00000012290	SF1	68	84.824	ENSACLG00000007633	sf1	61	79.805	Astatotilapia_calliptera
ENSCPOG00000012290	SF1	69	86.096	ENSAMXG00000003630	sf1	50	77.724	Astyanax_mexicanus
ENSCPOG00000012290	SF1	96	99.228	ENSBTAG00000001035	SF1	92	99.320	Bos_taurus
ENSCPOG00000012290	SF1	100	99.628	ENSCJAG00000002780	SF1	98	99.522	Callithrix_jacchus
ENSCPOG00000012290	SF1	100	99.522	ENSCAFG00000014239	SF1	98	99.522	Canis_familiaris
ENSCPOG00000012290	SF1	100	99.522	ENSCAFG00020014381	SF1	98	99.522	Canis_lupus_dingo
ENSCPOG00000012290	SF1	100	99.628	ENSCHIG00000025867	SF1	98	99.628	Capra_hircus
ENSCPOG00000012290	SF1	57	99.281	ENSTSYG00000033618	SF1	82	99.281	Carlito_syrichta
ENSCPOG00000012290	SF1	82	99.091	ENSCAPG00000010762	SF1	100	79.365	Cavia_aperea
ENSCPOG00000012290	SF1	100	99.628	ENSCCAG00000037881	SF1	98	99.522	Cebus_capucinus
ENSCPOG00000012290	SF1	96	84.496	ENSCCAG00000023781	-	92	84.685	Cebus_capucinus
ENSCPOG00000012290	SF1	100	99.522	ENSCATG00000011564	SF1	98	99.522	Cercocebus_atys
ENSCPOG00000012290	SF1	100	99.628	ENSCSAG00000007258	SF1	98	99.628	Chlorocebus_sabaeus
ENSCPOG00000012290	SF1	77	93.204	ENSCHOG00000006008	SF1	79	93.301	Choloepus_hoffmanni
ENSCPOG00000012290	SF1	96	86.822	ENSCPBG00000023763	SF1	66	85.465	Chrysemys_picta_bellii
ENSCPOG00000012290	SF1	70	58.115	ENSCING00000005564	-	74	60.372	Ciona_intestinalis
ENSCPOG00000012290	SF1	95	53.179	ENSCSAVG00000009055	-	72	63.455	Ciona_savignyi
ENSCPOG00000012290	SF1	100	99.522	ENSCANG00000042201	SF1	98	99.522	Colobus_angolensis_palliatus
ENSCPOG00000012290	SF1	98	97.524	ENSCGRG00001003677	Sf1	98	95.171	Cricetulus_griseus_chok1gshd
ENSCPOG00000012290	SF1	100	98.883	ENSCGRG00000001708	Sf1	99	98.883	Cricetulus_griseus_crigri
ENSCPOG00000012290	SF1	69	84.783	ENSCVAG00000001670	sf1	63	79.361	Cyprinodon_variegatus
ENSCPOG00000012290	SF1	72	80.867	ENSDARG00000008188	sf1	70	78.385	Danio_rerio
ENSCPOG00000012290	SF1	100	99.255	ENSDNOG00000001282	SF1	98	99.255	Dasypus_novemcinctus
ENSCPOG00000012290	SF1	100	99.362	ENSDORG00000016334	Sf1	98	99.362	Dipodomys_ordii
ENSCPOG00000012290	SF1	96	91.313	ENSETEG00000012830	SF1	82	91.453	Echinops_telfairi
ENSCPOG00000012290	SF1	100	99.255	ENSEASG00005018272	SF1	98	99.255	Equus_asinus_asinus
ENSCPOG00000012290	SF1	100	99.441	ENSECAG00000024544	SF1	98	99.441	Equus_caballus
ENSCPOG00000012290	SF1	73	98.982	ENSEEUG00000001058	SF1	100	98.982	Erinaceus_europaeus
ENSCPOG00000012290	SF1	68	81.720	ENSELUG00000013225	sf1	54	78.230	Esox_lucius
ENSCPOG00000012290	SF1	100	99.628	ENSFCAG00000012231	SF1	98	99.522	Felis_catus
ENSCPOG00000012290	SF1	99	95.419	ENSFDAG00000009833	SF1	99	95.419	Fukomys_damarensis
ENSCPOG00000012290	SF1	69	82.011	ENSFHEG00000022656	sf1	59	77.251	Fundulus_heteroclitus
ENSCPOG00000012290	SF1	59	88.308	ENSGMOG00000007469	sf1	60	87.651	Gadus_morhua
ENSCPOG00000012290	SF1	69	83.554	ENSGAFG00000019284	sf1	76	79.167	Gambusia_affinis
ENSCPOG00000012290	SF1	69	80.526	ENSGACG00000000826	sf1	67	76.271	Gasterosteus_aculeatus
ENSCPOG00000012290	SF1	85	89.207	ENSGAGG00000021691	SF1	72	85.465	Gopherus_agassizii
ENSCPOG00000012290	SF1	100	99.522	ENSHGLG00000009541	SF1	98	99.522	Heterocephalus_glaber_female
ENSCPOG00000012290	SF1	81	88.736	ENSHGLG00100008076	-	87	86.574	Heterocephalus_glaber_male
ENSCPOG00000012290	SF1	92	96.545	ENSHGLG00100013879	-	93	96.177	Heterocephalus_glaber_male
ENSCPOG00000012290	SF1	84	86.452	ENSHGLG00100008255	-	92	86.022	Heterocephalus_glaber_male
ENSCPOG00000012290	SF1	69	81.102	ENSHCOG00000011388	sf1	58	76.755	Hippocampus_comes
ENSCPOG00000012290	SF1	100	99.203	ENSSTOG00000009790	-	100	99.203	Ictidomys_tridecemlineatus
ENSCPOG00000012290	SF1	96	88.760	ENSSTOG00000024353	-	83	96.667	Ictidomys_tridecemlineatus
ENSCPOG00000012290	SF1	100	99.203	ENSJJAG00000011788	Sf1	98	99.203	Jaculus_jaculus
ENSCPOG00000012290	SF1	59	83.508	ENSKMAG00000005854	sf1	62	77.619	Kryptolebias_marmoratus
ENSCPOG00000012290	SF1	94	60.175	ENSLBEG00000019836	sf1	64	78.230	Labrus_bergylta
ENSCPOG00000012290	SF1	76	78.986	ENSLACG00000018493	SF1	86	70.189	Latimeria_chalumnae
ENSCPOG00000012290	SF1	69	84.718	ENSLOCG00000002130	sf1	59	79.803	Lepisosteus_oculatus
ENSCPOG00000012290	SF1	98	98.095	ENSLAFG00000007201	SF1	100	95.194	Loxodonta_africana
ENSCPOG00000012290	SF1	100	99.522	ENSMFAG00000033122	SF1	98	99.522	Macaca_fascicularis
ENSCPOG00000012290	SF1	100	99.628	ENSMMUG00000022606	SF1	99	99.017	Macaca_mulatta
ENSCPOG00000012290	SF1	100	98.708	ENSMNEG00000037901	SF1	99	95.385	Macaca_nemestrina
ENSCPOG00000012290	SF1	100	99.522	ENSMLEG00000040706	SF1	95	99.522	Mandrillus_leucophaeus
ENSCPOG00000012290	SF1	100	98.724	ENSMAUG00000014064	Sf1	98	98.724	Mesocricetus_auratus
ENSCPOG00000012290	SF1	100	99.628	ENSMICG00000001202	SF1	98	99.203	Microcebus_murinus
ENSCPOG00000012290	SF1	100	98.724	ENSMOCG00000022038	Sf1	98	98.724	Microtus_ochrogaster
ENSCPOG00000012290	SF1	68	82.016	ENSMMOG00000020474	sf1	60	76.399	Mola_mola
ENSCPOG00000012290	SF1	83	94.382	ENSMODG00000029407	SF1	93	97.892	Monodelphis_domestica
ENSCPOG00000012290	SF1	68	84.110	ENSMALG00000020521	sf1	68	76.485	Monopterus_albus
ENSCPOG00000012290	SF1	100	99.069	MGP_CAROLIEiJ_G0022607	Sf1	100	99.625	Mus_caroli
ENSCPOG00000012290	SF1	100	99.069	ENSMUSG00000024949	Sf1	100	99.625	Mus_musculus
ENSCPOG00000012290	SF1	100	99.069	MGP_PahariEiJ_G0014101	Sf1	100	99.625	Mus_pahari
ENSCPOG00000012290	SF1	100	99.069	MGP_SPRETEiJ_G0023518	Sf1	100	99.625	Mus_spretus
ENSCPOG00000012290	SF1	96	99.035	ENSMPUG00000012684	SF1	92	99.150	Mustela_putorius_furo
ENSCPOG00000012290	SF1	83	94.170	ENSMLUG00000029800	-	76	94.582	Myotis_lucifugus
ENSCPOG00000012290	SF1	96	99.035	ENSMLUG00000015217	-	92	99.150	Myotis_lucifugus
ENSCPOG00000012290	SF1	100	99.203	ENSNGAG00000005550	Sf1	98	99.203	Nannospalax_galili
ENSCPOG00000012290	SF1	68	84.824	ENSNBRG00000017606	sf1	60	80.392	Neolamprologus_brichardi
ENSCPOG00000012290	SF1	100	99.362	ENSNLEG00000005236	-	98	99.362	Nomascus_leucogenys
ENSCPOG00000012290	SF1	99	98.117	ENSMEUG00000013424	SF1	100	98.117	Notamacropus_eugenii
ENSCPOG00000012290	SF1	92	98.990	ENSOPRG00000005008	SF1	100	98.990	Ochotona_princeps
ENSCPOG00000012290	SF1	100	89.028	ENSODEG00000006102	-	98	87.147	Octodon_degus
ENSCPOG00000012290	SF1	75	86.700	ENSOANG00000002909	SF1	96	87.724	Ornithorhynchus_anatinus
ENSCPOG00000012290	SF1	100	99.681	ENSOCUG00000026486	SF1	99	99.681	Oryctolagus_cuniculus
ENSCPOG00000012290	SF1	70	80.620	ENSORLG00000011853	sf1	58	76.998	Oryzias_latipes
ENSCPOG00000012290	SF1	70	80.879	ENSORLG00020011834	sf1	58	76.998	Oryzias_latipes_hni
ENSCPOG00000012290	SF1	69	80.423	ENSORLG00015012855	sf1	59	76.499	Oryzias_latipes_hsok
ENSCPOG00000012290	SF1	59	81.746	ENSOMEG00000005210	sf1	60	77.698	Oryzias_melastigma
ENSCPOG00000012290	SF1	100	99.362	ENSOGAG00000016196	SF1	98	99.362	Otolemur_garnettii
ENSCPOG00000012290	SF1	96	94.834	ENSOARG00000009166	SF1	95	94.834	Ovis_aries
ENSCPOG00000012290	SF1	100	96.172	ENSPPAG00000002799	-	99	96.172	Pan_paniscus
ENSCPOG00000012290	SF1	100	99.628	ENSPPRG00000013566	SF1	98	99.522	Panthera_pardus
ENSCPOG00000012290	SF1	82	98.636	ENSPTIG00000016141	SF1	92	98.876	Panthera_tigris_altaica
ENSCPOG00000012290	SF1	100	99.628	ENSPTRG00000003846	SF1	98	99.522	Pan_troglodytes
ENSCPOG00000012290	SF1	100	99.628	ENSPANG00000020754	SF1	98	99.628	Papio_anubis
ENSCPOG00000012290	SF1	61	79.580	ENSPKIG00000012116	sf1	88	74.499	Paramormyrops_kingsleyae
ENSCPOG00000012290	SF1	65	87.464	ENSPSIG00000003610	SF1	84	82.944	Pelodiscus_sinensis
ENSCPOG00000012290	SF1	100	98.884	ENSPEMG00000010463	Sf1	98	98.884	Peromyscus_maniculatus_bairdii
ENSCPOG00000012290	SF1	100	97.767	ENSPCIG00000018173	SF1	98	97.767	Phascolarctos_cinereus
ENSCPOG00000012290	SF1	69	85.326	ENSPFOG00000013683	sf1	66	79.512	Poecilia_formosa
ENSCPOG00000012290	SF1	69	83.820	ENSPLAG00000018076	sf1	61	77.938	Poecilia_latipinna
ENSCPOG00000012290	SF1	69	83.820	ENSPMEG00000005726	sf1	62	78.177	Poecilia_mexicana
ENSCPOG00000012290	SF1	69	83.289	ENSPREG00000004155	sf1	59	77.698	Poecilia_reticulata
ENSCPOG00000012290	SF1	100	99.362	ENSPPYG00000003098	-	98	99.612	Pongo_abelii
ENSCPOG00000012290	SF1	100	99.255	ENSPCAG00000013631	SF1	80	99.255	Procavia_capensis
ENSCPOG00000012290	SF1	100	99.362	ENSPCOG00000027546	SF1	98	99.362	Propithecus_coquereli
ENSCPOG00000012290	SF1	100	99.255	ENSPVAG00000016938	SF1	81	99.255	Pteropus_vampyrus
ENSCPOG00000012290	SF1	69	85.600	ENSPNAG00000013072	sf1	59	78.606	Pygocentrus_nattereri
ENSCPOG00000012290	SF1	96	98.649	ENSRNOG00000021085	Sf1	94	98.936	Rattus_norvegicus
ENSCPOG00000012290	SF1	100	95.375	ENSRBIG00000042818	SF1	98	95.375	Rhinopithecus_bieti
ENSCPOG00000012290	SF1	97	99.617	ENSRROG00000045655	SF1	100	99.617	Rhinopithecus_roxellana
ENSCPOG00000012290	SF1	54	43.421	YLR116W	MSL5	61	43.182	Saccharomyces_cerevisiae
ENSCPOG00000012290	SF1	96	77.132	ENSSBOG00000022267	-	97	81.127	Saimiri_boliviensis_boliviensis
ENSCPOG00000012290	SF1	74	93.500	ENSSHAG00000006841	SF1	74	94.541	Sarcophilus_harrisii
ENSCPOG00000012290	SF1	73	80.500	ENSSFOG00015021978	sf1	55	75.837	Scleropages_formosus
ENSCPOG00000012290	SF1	75	76.247	ENSSMAG00000007549	sf1	63	76.291	Scophthalmus_maximus
ENSCPOG00000012290	SF1	59	81.217	ENSSDUG00000003903	sf1	62	76.905	Seriola_dumerili
ENSCPOG00000012290	SF1	58	81.016	ENSSLDG00000013075	sf1	60	76.905	Seriola_lalandi_dorsalis
ENSCPOG00000012290	SF1	96	95.358	ENSSARG00000008180	SF1	100	95.358	Sorex_araneus
ENSCPOG00000012290	SF1	82	85.403	ENSSPUG00000012907	SF1	86	81.190	Sphenodon_punctatus
ENSCPOG00000012290	SF1	68	81.551	ENSSPAG00000019060	sf1	58	76.998	Stegastes_partitus
ENSCPOG00000012290	SF1	100	99.628	ENSSSCG00000013021	SF1	98	99.628	Sus_scrofa
ENSCPOG00000012290	SF1	97	61.174	ENSTNIG00000004820	sf1	78	68.974	Tetraodon_nigroviridis
ENSCPOG00000012290	SF1	85	92.140	ENSTBEG00000013133	SF1	66	92.105	Tupaia_belangeri
ENSCPOG00000012290	SF1	100	95.345	ENSTTRG00000008857	SF1	100	95.345	Tursiops_truncatus
ENSCPOG00000012290	SF1	77	96.074	ENSUAMG00000011977	SF1	92	96.074	Ursus_americanus
ENSCPOG00000012290	SF1	85	99.562	ENSUMAG00000007268	SF1	95	98.871	Ursus_maritimus
ENSCPOG00000012290	SF1	66	100.000	ENSVPAG00000011912	SF1	66	100.000	Vicugna_pacos
ENSCPOG00000012290	SF1	100	99.628	ENSVVUG00000028585	SF1	98	99.628	Vulpes_vulpes
ENSCPOG00000012290	SF1	93	69.783	ENSXETG00000008434	sf1	68	81.553	Xenopus_tropicalis
ENSCPOG00000012290	SF1	68	84.932	ENSXCOG00000003704	sf1	75	80.941	Xiphophorus_couchianus
ENSCPOG00000012290	SF1	69	83.069	ENSXMAG00000007822	sf1	61	79.426	Xiphophorus_maculatus