EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPOG00000012328 (Gene tree)
Gene ID: 100713418
Gene Symbol: -
Alias: -
Full Name: survival of motor neuron 1%2C telomeric
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Plus strand
Length: 14324 bases
Position: chrDS563036.1:1303763-1318086
Accession: 100713418
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000011091	TUDOR	PF00567.24	4.6e-05	1	1
ENSCPOP00000027066	TUDOR	PF00567.24	4.6e-05	1	1
ENSCPOP00000030677	TUDOR	PF00567.24	4.7e-05	1	1
ENSCPOP00000011091	SMN	PF06003.12	1.3e-104	1	1
ENSCPOP00000027066	SMN	PF06003.12	1.3e-104	1	1
ENSCPOP00000030677	SMN	PF06003.12	5.6e-101	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000047949	-	909	-	ENSCPOP00000030677	302 (aa)	-	A0A286XYP1
ENSCPOT00000012445	-	924	XM_003461612	ENSCPOP00000011091	296 (aa)	XP_003461660	H0VL69
ENSCPOT00000046667	-	894	-	ENSCPOP00000027066	297 (aa)	-	A0A286XNK0

Gene Model

Click here to download ENSCPOG00000012328's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000012328's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPOG00000012328	-	100	97.297	ENSCPOG00000036973	-	99	97.297

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000012328	-	96	80.836	ENSG00000172062	SMN1	100	81.522	Homo_sapiens
ENSCPOG00000012328	-	96	80.836	ENSG00000205571	SMN2	100	81.522	Homo_sapiens
ENSCPOG00000012328	-	93	52.650	ENSAPOG00000011324	smn1	94	50.000	Acanthochromis_polyacanthus
ENSCPOG00000012328	-	97	82.230	ENSAMEG00000003316	-	95	82.534	Ailuropoda_melanoleuca
ENSCPOG00000012328	-	89	48.148	ENSACIG00000019772	-	97	49.057	Amphilophus_citrinellus
ENSCPOG00000012328	-	93	53.004	ENSAOCG00000024444	smn1	94	52.128	Amphiprion_ocellaris
ENSCPOG00000012328	-	93	50.853	ENSAPEG00000016504	smn1	94	51.773	Amphiprion_percula
ENSCPOG00000012328	-	92	53.497	ENSATEG00000002182	smn1	81	52.128	Anabas_testudineus
ENSCPOG00000012328	-	67	56.345	ENSAPLG00000010912	-	96	54.822	Anas_platyrhynchos
ENSCPOG00000012328	-	94	53.737	ENSACAG00000010017	-	95	57.447	Anolis_carolinensis
ENSCPOG00000012328	-	99	79.195	ENSANAG00000032133	-	98	79.530	Aotus_nancymaae
ENSCPOG00000012328	-	93	51.773	ENSACLG00000007308	smn1	89	51.986	Astatotilapia_calliptera
ENSCPOG00000012328	-	50	55.034	ENSAMXG00000013884	smn1	97	47.222	Astyanax_mexicanus
ENSCPOG00000012328	-	97	80.556	ENSBTAG00000005743	SMN2	99	78.498	Bos_taurus
ENSCPOG00000012328	-	96	81.597	ENSCJAG00000016290	-	98	81.145	Callithrix_jacchus
ENSCPOG00000012328	-	97	82.230	ENSCAFG00000007812	SMN	99	81.849	Canis_familiaris
ENSCPOG00000012328	-	97	82.168	ENSCAFG00020019229	-	92	81.787	Canis_lupus_dingo
ENSCPOG00000012328	-	97	80.345	ENSCHIG00000015559	-	97	78.305	Capra_hircus
ENSCPOG00000012328	-	98	80.690	ENSTSYG00000012058	-	98	81.379	Carlito_syrichta
ENSCPOG00000012328	-	77	89.427	ENSCAPG00000011021	-	100	88.987	Cavia_aperea
ENSCPOG00000012328	-	96	80.769	ENSCCAG00000018127	-	98	80.339	Cebus_capucinus
ENSCPOG00000012328	-	96	81.882	ENSCATG00000037002	-	100	80.208	Cercocebus_atys
ENSCPOG00000012328	-	100	89.527	ENSCLAG00000000284	-	99	90.541	Chinchilla_lanigera
ENSCPOG00000012328	-	96	82.230	ENSCSAG00000015688	-	98	81.757	Chlorocebus_sabaeus
ENSCPOG00000012328	-	86	68.482	ENSCHOG00000007346	-	67	79.191	Choloepus_hoffmanni
ENSCPOG00000012328	-	93	61.011	ENSCPBG00000010968	-	96	59.925	Chrysemys_picta_bellii
ENSCPOG00000012328	-	96	82.807	ENSCANG00000038242	-	100	81.979	Colobus_angolensis_palliatus
ENSCPOG00000012328	-	98	73.579	ENSCANG00000033324	-	99	73.579	Colobus_angolensis_palliatus
ENSCPOG00000012328	-	99	77.474	ENSCGRG00001017959	-	99	78.157	Cricetulus_griseus_chok1gshd
ENSCPOG00000012328	-	99	59.589	ENSCGRG00001016998	-	99	61.301	Cricetulus_griseus_chok1gshd
ENSCPOG00000012328	-	99	77.474	ENSCGRG00000007698	Smn1	99	78.157	Cricetulus_griseus_crigri
ENSCPOG00000012328	-	93	44.330	ENSCSEG00000015227	smn1	97	46.599	Cynoglossus_semilaevis
ENSCPOG00000012328	-	95	50.342	ENSCVAG00000007498	smn1	95	51.429	Cyprinodon_variegatus
ENSCPOG00000012328	-	94	51.590	ENSDARG00000018494	smn1	95	50.345	Danio_rerio
ENSCPOG00000012328	-	78	66.522	ENSDNOG00000045949	-	79	64.767	Dasypus_novemcinctus
ENSCPOG00000012328	-	83	78.543	ENSDNOG00000007283	-	100	79.352	Dasypus_novemcinctus
ENSCPOG00000012328	-	100	73.986	ENSDORG00000007082	Smn1	99	71.959	Dipodomys_ordii
ENSCPOG00000012328	-	72	65.278	ENSETEG00000001406	-	93	64.500	Echinops_telfairi
ENSCPOG00000012328	-	93	38.000	ENSEBUG00000011902	smn1	95	38.408	Eptatretus_burgeri
ENSCPOG00000012328	-	90	71.747	ENSEASG00005018000	-	89	74.031	Equus_asinus_asinus
ENSCPOG00000012328	-	97	79.514	ENSECAG00000015215	-	99	79.932	Equus_caballus
ENSCPOG00000012328	-	86	73.438	ENSEEUG00000015777	-	100	70.930	Erinaceus_europaeus
ENSCPOG00000012328	-	94	51.546	ENSELUG00000018067	smn1	95	48.936	Esox_lucius
ENSCPOG00000012328	-	100	80.201	ENSFCAG00000028292	SMN	99	81.229	Felis_catus
ENSCPOG00000012328	-	91	58.242	ENSFALG00000012320	-	94	58.242	Ficedula_albicollis
ENSCPOG00000012328	-	100	86.824	ENSFDAG00000017683	-	99	86.824	Fukomys_damarensis
ENSCPOG00000012328	-	62	51.630	ENSFHEG00000018508	smn1	97	50.709	Fundulus_heteroclitus
ENSCPOG00000012328	-	96	47.099	ENSGMOG00000017279	smn1	95	43.007	Gadus_morhua
ENSCPOG00000012328	-	93	58.029	ENSGALG00000002430	SMN	95	56.159	Gallus_gallus
ENSCPOG00000012328	-	93	51.228	ENSGAFG00000009501	smn1	94	50.179	Gambusia_affinis
ENSCPOG00000012328	-	93	50.730	ENSGACG00000010584	smn1	91	48.029	Gasterosteus_aculeatus
ENSCPOG00000012328	-	97	58.478	ENSGAGG00000011374	-	96	57.785	Gopherus_agassizii
ENSCPOG00000012328	-	93	36.054	ENSGAGG00000013639	-	60	48.485	Gopherus_agassizii
ENSCPOG00000012328	-	95	68.990	ENSGGOG00000003872	-	100	69.965	Gorilla_gorilla
ENSCPOG00000012328	-	66	79.000	ENSGGOG00000026704	-	91	79.000	Gorilla_gorilla
ENSCPOG00000012328	-	93	51.773	ENSHBUG00000013987	smn1	94	52.536	Haplochromis_burtoni
ENSCPOG00000012328	-	99	88.475	ENSHGLG00000001018	-	98	89.041	Heterocephalus_glaber_female
ENSCPOG00000012328	-	100	83.446	ENSHGLG00000001905	-	99	83.448	Heterocephalus_glaber_female
ENSCPOG00000012328	-	99	88.475	ENSHGLG00100011252	-	98	89.041	Heterocephalus_glaber_male
ENSCPOG00000012328	-	96	83.099	ENSHGLG00100018676	-	99	83.099	Heterocephalus_glaber_male
ENSCPOG00000012328	-	90	50.362	ENSHCOG00000017136	smn1	87	46.863	Hippocampus_comes
ENSCPOG00000012328	-	94	47.368	ENSIPUG00000012580	smn1	86	48.110	Ictalurus_punctatus
ENSCPOG00000012328	-	94	82.332	ENSSTOG00000012288	-	100	83.039	Ictidomys_tridecemlineatus
ENSCPOG00000012328	-	60	62.570	ENSJJAG00000014853	-	89	62.222	Jaculus_jaculus
ENSCPOG00000012328	-	93	52.797	ENSKMAG00000007239	smn1	96	49.438	Kryptolebias_marmoratus
ENSCPOG00000012328	-	93	53.004	ENSLBEG00000022550	smn1	94	51.379	Labrus_bergylta
ENSCPOG00000012328	-	95	35.690	ENSLACG00000009808	-	97	35.738	Latimeria_chalumnae
ENSCPOG00000012328	-	93	53.237	ENSLOCG00000011339	smn1	96	52.128	Lepisosteus_oculatus
ENSCPOG00000012328	-	100	79.333	ENSLAFG00000003425	-	96	79.333	Loxodonta_africana
ENSCPOG00000012328	-	96	77.352	ENSMFAG00000008812	-	98	77.027	Macaca_fascicularis
ENSCPOG00000012328	-	96	82.578	ENSMFAG00000031523	SMN1	100	81.250	Macaca_fascicularis
ENSCPOG00000012328	-	96	76.655	ENSMMUG00000030594	-	98	76.351	Macaca_mulatta
ENSCPOG00000012328	-	96	82.578	ENSMMUG00000020214	SMN1	100	81.250	Macaca_mulatta
ENSCPOG00000012328	-	96	82.230	ENSMNEG00000035094	-	100	81.250	Macaca_nemestrina
ENSCPOG00000012328	-	74	69.369	ENSMNEG00000036423	-	86	65.766	Macaca_nemestrina
ENSCPOG00000012328	-	96	82.578	ENSMLEG00000041902	-	99	81.754	Mandrillus_leucophaeus
ENSCPOG00000012328	-	92	49.640	ENSMAMG00000011034	smn1	94	50.173	Mastacembelus_armatus
ENSCPOG00000012328	-	92	53.025	ENSMZEG00005013634	smn1	94	53.169	Maylandia_zebra
ENSCPOG00000012328	-	66	57.653	ENSMGAG00000008889	-	94	55.612	Meleagris_gallopavo
ENSCPOG00000012328	-	99	76.109	ENSMAUG00000010262	Smn1	99	76.792	Mesocricetus_auratus
ENSCPOG00000012328	-	97	67.931	ENSMICG00000034708	-	99	73.404	Microcebus_murinus
ENSCPOG00000012328	-	99	76.109	ENSMOCG00000017833	Smn1	99	76.792	Microtus_ochrogaster
ENSCPOG00000012328	-	92	46.595	ENSMMOG00000005504	smn1	95	48.571	Mola_mola
ENSCPOG00000012328	-	98	65.292	ENSMODG00000001436	-	97	65.636	Monodelphis_domestica
ENSCPOG00000012328	-	93	49.822	ENSMALG00000008025	smn1	95	51.228	Monopterus_albus
ENSCPOG00000012328	-	99	76.871	MGP_CAROLIEiJ_G0018836	Smn1	99	77.551	Mus_caroli
ENSCPOG00000012328	-	99	75.850	ENSMUSG00000021645	Smn1	99	76.871	Mus_musculus
ENSCPOG00000012328	-	99	75.000	MGP_PahariEiJ_G0015911	Smn1	99	75.000	Mus_pahari
ENSCPOG00000012328	-	99	75.510	MGP_SPRETEiJ_G0019718	Smn1	99	76.531	Mus_spretus
ENSCPOG00000012328	-	94	82.734	ENSMPUG00000014470	-	98	81.754	Mustela_putorius_furo
ENSCPOG00000012328	-	97	80.000	ENSMLUG00000010603	-	95	79.667	Myotis_lucifugus
ENSCPOG00000012328	-	98	77.663	ENSNGAG00000019833	Smn1	98	77.663	Nannospalax_galili
ENSCPOG00000012328	-	92	50.730	ENSNBRG00000023000	smn1	94	53.261	Neolamprologus_brichardi
ENSCPOG00000012328	-	99	80.068	ENSNLEG00000004454	-	100	81.522	Nomascus_leucogenys
ENSCPOG00000012328	-	78	63.362	ENSMEUG00000011393	-	99	62.931	Notamacropus_eugenii
ENSCPOG00000012328	-	86	78.682	ENSOPRG00000002015	-	100	79.070	Ochotona_princeps
ENSCPOG00000012328	-	95	92.199	ENSODEG00000015976	-	97	92.632	Octodon_degus
ENSCPOG00000012328	-	92	50.365	ENSONIG00000011799	smn1	94	52.899	Oreochromis_niloticus
ENSCPOG00000012328	-	94	64.516	ENSOANG00000001626	-	96	64.875	Ornithorhynchus_anatinus
ENSCPOG00000012328	-	99	75.503	ENSOCUG00000026649	-	99	76.333	Oryctolagus_cuniculus
ENSCPOG00000012328	-	99	70.333	ENSOCUG00000025183	-	100	71.429	Oryctolagus_cuniculus
ENSCPOG00000012328	-	100	77.778	ENSOCUG00000017097	-	99	78.041	Oryctolagus_cuniculus
ENSCPOG00000012328	-	54	58.282	ENSORLG00000010552	smn1	53	58.125	Oryzias_latipes
ENSCPOG00000012328	-	93	50.360	ENSORLG00020007936	smn1	94	48.375	Oryzias_latipes_hni
ENSCPOG00000012328	-	92	50.000	ENSORLG00015022425	smn1	94	49.104	Oryzias_latipes_hsok
ENSCPOG00000012328	-	93	49.296	ENSOMEG00000007824	smn1	94	49.135	Oryzias_melastigma
ENSCPOG00000012328	-	92	73.022	ENSOGAG00000031414	-	100	71.186	Otolemur_garnettii
ENSCPOG00000012328	-	95	78.648	ENSOARG00000005425	-	100	76.868	Ovis_aries
ENSCPOG00000012328	-	96	80.488	ENSPPAG00000036640	-	100	81.522	Pan_paniscus
ENSCPOG00000012328	-	100	80.537	ENSPPRG00000005575	-	99	81.570	Panthera_pardus
ENSCPOG00000012328	-	100	80.268	ENSPTIG00000007745	-	99	81.293	Panthera_tigris_altaica
ENSCPOG00000012328	-	96	80.000	ENSPTRG00000016955	-	100	81.522	Pan_troglodytes
ENSCPOG00000012328	-	95	77.113	ENSPANG00000000253	-	97	75.768	Papio_anubis
ENSCPOG00000012328	-	99	81.757	ENSPANG00000013601	-	100	81.250	Papio_anubis
ENSCPOG00000012328	-	94	49.481	ENSPKIG00000011096	smn1	97	48.097	Paramormyrops_kingsleyae
ENSCPOG00000012328	-	92	56.786	ENSPSIG00000014787	-	87	56.071	Pelodiscus_sinensis
ENSCPOG00000012328	-	93	46.570	ENSPMGG00000012285	smn1	94	48.872	Periophthalmus_magnuspinnatus
ENSCPOG00000012328	-	90	43.704	ENSPMAG00000005004	smn1	96	40.690	Petromyzon_marinus
ENSCPOG00000012328	-	98	67.010	ENSPCIG00000025764	-	99	67.466	Phascolarctos_cinereus
ENSCPOG00000012328	-	93	51.613	ENSPFOG00000007786	smn1	94	50.896	Poecilia_formosa
ENSCPOG00000012328	-	93	51.971	ENSPLAG00000012071	smn1	94	51.254	Poecilia_latipinna
ENSCPOG00000012328	-	93	51.613	ENSPMEG00000017085	smn1	94	50.896	Poecilia_mexicana
ENSCPOG00000012328	-	93	51.930	ENSPREG00000005824	smn1	94	51.613	Poecilia_reticulata
ENSCPOG00000012328	-	92	78.755	ENSPPYG00000015533	-	96	79.121	Pongo_abelii
ENSCPOG00000012328	-	86	49.412	ENSPPYG00000019189	-	98	70.833	Pongo_abelii
ENSCPOG00000012328	-	92	74.545	ENSPCAG00000004187	-	100	74.909	Procavia_capensis
ENSCPOG00000012328	-	90	63.100	ENSPCOG00000022307	-	91	74.766	Propithecus_coquereli
ENSCPOG00000012328	-	97	82.168	ENSPVAG00000005977	-	99	81.757	Pteropus_vampyrus
ENSCPOG00000012328	-	92	50.730	ENSPNYG00000014148	smn1	94	53.261	Pundamilia_nyererei
ENSCPOG00000012328	-	95	47.703	ENSPNAG00000014007	smn1	85	48.288	Pygocentrus_nattereri
ENSCPOG00000012328	-	99	75.510	ENSRNOG00000018067	Smn1	99	76.531	Rattus_norvegicus
ENSCPOG00000012328	-	96	82.230	ENSRBIG00000037052	-	100	80.208	Rhinopithecus_bieti
ENSCPOG00000012328	-	98	65.993	ENSRBIG00000036775	-	99	66.330	Rhinopithecus_bieti
ENSCPOG00000012328	-	99	67.905	ENSRROG00000031088	-	98	67.230	Rhinopithecus_roxellana
ENSCPOG00000012328	-	96	82.230	ENSRROG00000039399	-	99	81.404	Rhinopithecus_roxellana
ENSCPOG00000012328	-	96	81.404	ENSSBOG00000011665	-	98	81.633	Saimiri_boliviensis_boliviensis
ENSCPOG00000012328	-	84	74.319	ENSSBOG00000020112	-	87	71.206	Saimiri_boliviensis_boliviensis
ENSCPOG00000012328	-	100	65.657	ENSSHAG00000001499	-	100	64.769	Sarcophilus_harrisii
ENSCPOG00000012328	-	93	50.725	ENSSFOG00015015507	smn1	95	48.944	Scleropages_formosus
ENSCPOG00000012328	-	93	48.921	ENSSMAG00000007922	smn1	94	47.464	Scophthalmus_maximus
ENSCPOG00000012328	-	93	50.883	ENSSDUG00000018533	smn1	94	49.291	Seriola_dumerili
ENSCPOG00000012328	-	93	51.237	ENSSLDG00000021135	smn1	94	49.645	Seriola_lalandi_dorsalis
ENSCPOG00000012328	-	92	64.260	ENSSPUG00000000373	-	93	62.681	Sphenodon_punctatus
ENSCPOG00000012328	-	93	51.408	ENSSPAG00000004345	smn1	94	50.355	Stegastes_partitus
ENSCPOG00000012328	-	97	80.556	ENSSSCG00000016970	-	99	80.471	Sus_scrofa
ENSCPOG00000012328	-	97	59.233	ENSSSCG00000029127	-	97	59.524	Sus_scrofa
ENSCPOG00000012328	-	72	56.075	ENSSSCG00000033865	-	95	55.300	Sus_scrofa
ENSCPOG00000012328	-	93	57.762	ENSTGUG00000001548	-	99	57.762	Taeniopygia_guttata
ENSCPOG00000012328	-	93	46.809	ENSTRUG00000000736	smn	96	44.681	Takifugu_rubripes
ENSCPOG00000012328	-	93	46.831	ENSTNIG00000009892	smn1	94	46.454	Tetraodon_nigroviridis
ENSCPOG00000012328	-	64	80.952	ENSTBEG00000002399	-	93	79.500	Tupaia_belangeri
ENSCPOG00000012328	-	97	77.003	ENSTTRG00000005080	-	100	76.000	Tursiops_truncatus
ENSCPOG00000012328	-	64	80.423	ENSUAMG00000024947	-	70	79.000	Ursus_americanus
ENSCPOG00000012328	-	97	82.927	ENSUMAG00000007842	-	74	83.219	Ursus_maritimus
ENSCPOG00000012328	-	92	70.588	ENSVPAG00000009887	-	100	70.070	Vicugna_pacos
ENSCPOG00000012328	-	97	82.230	ENSVVUG00000006934	-	99	81.849	Vulpes_vulpes
ENSCPOG00000012328	-	91	36.491	ENSXETG00000004912	-	79	63.492	Xenopus_tropicalis
ENSCPOG00000012328	-	96	54.795	ENSXETG00000018189	smn2	95	53.952	Xenopus_tropicalis
ENSCPOG00000012328	-	93	51.930	ENSXMAG00000001521	smn1	94	50.538	Xiphophorus_maculatus