EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPOG00000012350 (Gene tree)
Gene ID: 100728141
Gene Symbol: POLR1A
Alias: DKFZP586M0122|FLJ21915|RPA1|RPO1-4
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Plus strand
Length: 72721 bases
Position: chrDS562892.1:4704500-4777220
Accession: 100728141
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000011112	RNA_pol_Rpb1_5	PF04998.17	2e-103	1	1
ENSCPOP00000011112	RNA_pol_Rpb1_4	PF05000.17	3.4e-25	1	1
ENSCPOP00000011112	RNA_pol_Rpb1_2	PF00623.20	1.2e-69	1	1
ENSCPOP00000011112	RNA_pol_Rpb1_3	PF04983.18	1.9e-36	1	1
ENSCPOP00000011112	RNA_pol_Rpb1_1	PF04997.12	3.2e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000012467	POLR1A-201	6979	XM_013151514	ENSCPOP00000011112	1711 (aa)	XP_013006968	H0VL87

Gene Model

Click here to download ENSCPOG00000012350's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000012350's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPOG00000012350	POLR1A	74	31.928	ENSCPOG00000022387	POLR3A	75	31.928
ENSCPOG00000012350	POLR1A	77	38.462	ENSCPOG00000014812	-	55	38.462

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000012350	POLR1A	100	88.560	ENSG00000068654	POLR1A	100	88.269	Homo_sapiens
ENSCPOG00000012350	POLR1A	69	67.818	ENSAPOG00000017945	polr1a	99	68.071	Acanthochromis_polyacanthus
ENSCPOG00000012350	POLR1A	100	89.244	ENSAMEG00000005807	POLR1A	100	91.803	Ailuropoda_melanoleuca
ENSCPOG00000012350	POLR1A	100	63.066	ENSACIG00000022147	polr1a	100	63.366	Amphilophus_citrinellus
ENSCPOG00000012350	POLR1A	100	66.124	ENSAOCG00000017336	polr1a	100	67.724	Amphiprion_ocellaris
ENSCPOG00000012350	POLR1A	94	73.427	ENSAPEG00000016105	polr1a	98	73.427	Amphiprion_percula
ENSCPOG00000012350	POLR1A	100	66.532	ENSATEG00000016773	polr1a	100	65.438	Anabas_testudineus
ENSCPOG00000012350	POLR1A	86	71.922	ENSAPLG00000013871	POLR1A	99	71.777	Anas_platyrhynchos
ENSCPOG00000012350	POLR1A	99	69.012	ENSACAG00000012141	POLR1A	99	68.321	Anolis_carolinensis
ENSCPOG00000012350	POLR1A	100	87.805	ENSANAG00000033927	POLR1A	100	88.095	Aotus_nancymaae
ENSCPOG00000012350	POLR1A	100	62.849	ENSACLG00000020541	polr1a	100	62.181	Astatotilapia_calliptera
ENSCPOG00000012350	POLR1A	100	88.153	ENSBTAG00000006481	POLR1A	100	88.334	Bos_taurus
ENSCPOG00000012350	POLR1A	99	38.973	WBGene00012999	rpoa-1	98	38.301	Caenorhabditis_elegans
ENSCPOG00000012350	POLR1A	100	87.282	ENSCJAG00000019547	POLR1A	100	87.456	Callithrix_jacchus
ENSCPOG00000012350	POLR1A	100	89.645	ENSCAFG00000007613	POLR1A	100	89.645	Canis_familiaris
ENSCPOG00000012350	POLR1A	100	89.605	ENSCAFG00020014752	POLR1A	100	89.605	Canis_lupus_dingo
ENSCPOG00000012350	POLR1A	100	87.478	ENSCHIG00000018204	POLR1A	100	87.362	Capra_hircus
ENSCPOG00000012350	POLR1A	100	86.853	ENSTSYG00000002761	POLR1A	100	86.562	Carlito_syrichta
ENSCPOG00000012350	POLR1A	97	94.365	ENSCAPG00000010132	POLR1A	100	94.354	Cavia_aperea
ENSCPOG00000012350	POLR1A	100	87.979	ENSCCAG00000019839	POLR1A	100	88.153	Cebus_capucinus
ENSCPOG00000012350	POLR1A	100	89.199	ENSCATG00000029786	POLR1A	100	88.908	Cercocebus_atys
ENSCPOG00000012350	POLR1A	100	94.299	ENSCLAG00000005187	POLR1A	100	94.299	Chinchilla_lanigera
ENSCPOG00000012350	POLR1A	100	88.502	ENSCSAG00000016251	POLR1A	100	88.676	Chlorocebus_sabaeus
ENSCPOG00000012350	POLR1A	99	74.169	ENSCPBG00000001115	POLR1A	99	74.169	Chrysemys_picta_bellii
ENSCPOG00000012350	POLR1A	99	46.682	ENSCSAVG00000007184	-	99	48.375	Ciona_savignyi
ENSCPOG00000012350	POLR1A	100	85.781	ENSCANG00000031785	POLR1A	100	85.781	Colobus_angolensis_palliatus
ENSCPOG00000012350	POLR1A	96	89.825	ENSCGRG00001006651	Polr1a	100	89.825	Cricetulus_griseus_chok1gshd
ENSCPOG00000012350	POLR1A	60	88.683	ENSCGRG00000010834	Polr1a	100	88.683	Cricetulus_griseus_crigri
ENSCPOG00000012350	POLR1A	100	62.362	ENSCSEG00000020190	polr1a	100	62.202	Cynoglossus_semilaevis
ENSCPOG00000012350	POLR1A	100	64.600	ENSCVAG00000020941	polr1a	100	64.097	Cyprinodon_variegatus
ENSCPOG00000012350	POLR1A	100	67.286	ENSDARG00000098375	polr1a	100	67.034	Danio_rerio
ENSCPOG00000012350	POLR1A	100	82.056	ENSDNOG00000010829	POLR1A	100	82.056	Dasypus_novemcinctus
ENSCPOG00000012350	POLR1A	100	89.082	ENSDORG00000008298	Polr1a	100	88.908	Dipodomys_ordii
ENSCPOG00000012350	POLR1A	79	45.275	FBgn0019938	RpI1	99	43.918	Drosophila_melanogaster
ENSCPOG00000012350	POLR1A	72	93.750	ENSETEG00000000412	-	72	93.750	Echinops_telfairi
ENSCPOG00000012350	POLR1A	89	48.280	ENSEBUG00000005667	-	99	48.249	Eptatretus_burgeri
ENSCPOG00000012350	POLR1A	100	89.779	ENSEASG00005001625	POLR1A	100	89.954	Equus_asinus_asinus
ENSCPOG00000012350	POLR1A	100	89.721	ENSECAG00000010092	POLR1A	100	92.324	Equus_caballus
ENSCPOG00000012350	POLR1A	100	89.721	ENSECAG00000036306	-	100	92.324	Equus_caballus
ENSCPOG00000012350	POLR1A	100	89.721	ENSECAG00000030510	-	100	92.324	Equus_caballus
ENSCPOG00000012350	POLR1A	85	93.617	ENSEEUG00000000676	POLR1A	85	93.333	Erinaceus_europaeus
ENSCPOG00000012350	POLR1A	100	67.288	ENSELUG00000012769	polr1a	99	67.074	Esox_lucius
ENSCPOG00000012350	POLR1A	100	89.070	ENSFCAG00000008966	POLR1A	100	89.070	Felis_catus
ENSCPOG00000012350	POLR1A	99	71.386	ENSFALG00000010082	POLR1A	99	71.386	Ficedula_albicollis
ENSCPOG00000012350	POLR1A	100	93.291	ENSFDAG00000013726	POLR1A	100	93.174	Fukomys_damarensis
ENSCPOG00000012350	POLR1A	100	62.770	ENSFHEG00000005996	polr1a	100	62.354	Fundulus_heteroclitus
ENSCPOG00000012350	POLR1A	100	59.988	ENSGMOG00000002230	polr1a	100	60.047	Gadus_morhua
ENSCPOG00000012350	POLR1A	90	69.176	ENSGALG00000038160	-	99	69.201	Gallus_gallus
ENSCPOG00000012350	POLR1A	100	65.134	ENSGAFG00000015266	polr1a	100	64.767	Gambusia_affinis
ENSCPOG00000012350	POLR1A	100	64.873	ENSGACG00000018791	polr1a	100	64.159	Gasterosteus_aculeatus
ENSCPOG00000012350	POLR1A	89	75.277	ENSGAGG00000004984	-	95	80.637	Gopherus_agassizii
ENSCPOG00000012350	POLR1A	100	88.618	ENSGGOG00000001788	POLR1A	100	88.328	Gorilla_gorilla
ENSCPOG00000012350	POLR1A	95	64.467	ENSHBUG00000020021	polr1a	98	64.508	Haplochromis_burtoni
ENSCPOG00000012350	POLR1A	100	93.754	ENSHGLG00000006334	POLR1A	100	93.754	Heterocephalus_glaber_female
ENSCPOG00000012350	POLR1A	100	93.481	ENSHGLG00100006614	POLR1A	100	93.481	Heterocephalus_glaber_male
ENSCPOG00000012350	POLR1A	100	61.949	ENSHCOG00000003345	polr1a	100	61.721	Hippocampus_comes
ENSCPOG00000012350	POLR1A	100	65.794	ENSIPUG00000013174	polr1a	100	65.280	Ictalurus_punctatus
ENSCPOG00000012350	POLR1A	100	87.858	ENSSTOG00000012580	POLR1A	100	87.631	Ictidomys_tridecemlineatus
ENSCPOG00000012350	POLR1A	100	89.213	ENSJJAG00000013113	Polr1a	100	89.213	Jaculus_jaculus
ENSCPOG00000012350	POLR1A	100	65.734	ENSKMAG00000007399	polr1a	100	65.268	Kryptolebias_marmoratus
ENSCPOG00000012350	POLR1A	94	69.019	ENSLBEG00000015401	polr1a	99	68.160	Labrus_bergylta
ENSCPOG00000012350	POLR1A	53	75.843	ENSLACG00000003218	polr1a	100	75.843	Latimeria_chalumnae
ENSCPOG00000012350	POLR1A	100	71.115	ENSLOCG00000010881	polr1a	100	71.346	Lepisosteus_oculatus
ENSCPOG00000012350	POLR1A	100	87.471	ENSLAFG00000014948	POLR1A	100	87.297	Loxodonta_africana
ENSCPOG00000012350	POLR1A	100	88.676	ENSMFAG00000046097	POLR1A	100	88.850	Macaca_fascicularis
ENSCPOG00000012350	POLR1A	100	88.560	ENSMMUG00000015815	POLR1A	100	88.734	Macaca_mulatta
ENSCPOG00000012350	POLR1A	100	88.676	ENSMNEG00000043313	POLR1A	100	88.850	Macaca_nemestrina
ENSCPOG00000012350	POLR1A	100	88.095	ENSMLEG00000042428	POLR1A	100	88.269	Mandrillus_leucophaeus
ENSCPOG00000012350	POLR1A	100	66.375	ENSMAMG00000016565	polr1a	100	66.259	Mastacembelus_armatus
ENSCPOG00000012350	POLR1A	100	66.337	ENSMZEG00005004915	polr1a	100	65.661	Maylandia_zebra
ENSCPOG00000012350	POLR1A	99	69.186	ENSMGAG00000013111	POLR1A	99	69.186	Meleagris_gallopavo
ENSCPOG00000012350	POLR1A	92	88.945	ENSMAUG00000008497	Polr1a	100	88.945	Mesocricetus_auratus
ENSCPOG00000012350	POLR1A	100	88.857	ENSMICG00000000757	POLR1A	100	88.741	Microcebus_murinus
ENSCPOG00000012350	POLR1A	100	88.766	ENSMOCG00000000122	Polr1a	100	88.591	Microtus_ochrogaster
ENSCPOG00000012350	POLR1A	100	64.977	ENSMMOG00000010216	polr1a	100	64.644	Mola_mola
ENSCPOG00000012350	POLR1A	100	74.813	ENSMODG00000009335	POLR1A	100	74.282	Monodelphis_domestica
ENSCPOG00000012350	POLR1A	100	65.754	ENSMALG00000013363	polr1a	100	65.389	Monopterus_albus
ENSCPOG00000012350	POLR1A	100	86.795	MGP_CAROLIEiJ_G0028494	Polr1a	100	86.736	Mus_caroli
ENSCPOG00000012350	POLR1A	100	87.202	ENSMUSG00000049553	Polr1a	100	87.027	Mus_musculus
ENSCPOG00000012350	POLR1A	100	87.951	MGP_PahariEiJ_G0022230	Polr1a	100	87.776	Mus_pahari
ENSCPOG00000012350	POLR1A	100	85.649	MGP_SPRETEiJ_G0029499	Polr1a	100	85.081	Mus_spretus
ENSCPOG00000012350	POLR1A	100	89.477	ENSMPUG00000009135	POLR1A	100	89.477	Mustela_putorius_furo
ENSCPOG00000012350	POLR1A	100	87.666	ENSMLUG00000015723	POLR1A	100	87.666	Myotis_lucifugus
ENSCPOG00000012350	POLR1A	100	89.005	ENSNGAG00000017907	Polr1a	100	88.831	Nannospalax_galili
ENSCPOG00000012350	POLR1A	100	66.414	ENSNBRG00000000519	polr1a	100	65.719	Neolamprologus_brichardi
ENSCPOG00000012350	POLR1A	100	86.647	ENSNLEG00000002264	POLR1A	100	86.590	Nomascus_leucogenys
ENSCPOG00000012350	POLR1A	75	91.339	ENSMEUG00000011665	-	75	91.339	Notamacropus_eugenii
ENSCPOG00000012350	POLR1A	99	82.318	ENSOPRG00000008269	POLR1A	100	82.141	Ochotona_princeps
ENSCPOG00000012350	POLR1A	100	94.807	ENSODEG00000003542	POLR1A	100	94.807	Octodon_degus
ENSCPOG00000012350	POLR1A	100	66.434	ENSONIG00000015895	polr1a	100	65.438	Oreochromis_niloticus
ENSCPOG00000012350	POLR1A	100	89.744	ENSOCUG00000010138	POLR1A	100	89.918	Oryctolagus_cuniculus
ENSCPOG00000012350	POLR1A	100	65.192	ENSORLG00000008753	polr1a	99	65.055	Oryzias_latipes
ENSCPOG00000012350	POLR1A	100	63.953	ENSORLG00020020726	polr1a	99	62.890	Oryzias_latipes_hni
ENSCPOG00000012350	POLR1A	95	76.596	ENSORLG00015016071	polr1a	98	76.667	Oryzias_latipes_hsok
ENSCPOG00000012350	POLR1A	100	88.560	ENSOGAG00000004031	POLR1A	100	88.328	Otolemur_garnettii
ENSCPOG00000012350	POLR1A	100	88.167	ENSOARG00000020601	POLR1A	100	88.232	Ovis_aries
ENSCPOG00000012350	POLR1A	100	88.444	ENSPPAG00000042450	POLR1A	100	88.153	Pan_paniscus
ENSCPOG00000012350	POLR1A	100	89.128	ENSPPRG00000006702	POLR1A	100	89.128	Panthera_pardus
ENSCPOG00000012350	POLR1A	100	88.644	ENSPTIG00000018783	POLR1A	100	88.644	Panthera_tigris_altaica
ENSCPOG00000012350	POLR1A	100	88.328	ENSPTRG00000012147	POLR1A	100	88.095	Pan_troglodytes
ENSCPOG00000012350	POLR1A	100	89.082	ENSPANG00000025908	POLR1A	100	88.792	Papio_anubis
ENSCPOG00000012350	POLR1A	94	77.698	ENSPKIG00000005468	polr1a	98	77.698	Paramormyrops_kingsleyae
ENSCPOG00000012350	POLR1A	63	71.667	ENSPSIG00000009321	-	99	71.574	Pelodiscus_sinensis
ENSCPOG00000012350	POLR1A	55	68.162	ENSPMGG00000009718	polr1a	95	68.162	Periophthalmus_magnuspinnatus
ENSCPOG00000012350	POLR1A	100	89.471	ENSPEMG00000022224	Polr1a	100	89.238	Peromyscus_maniculatus_bairdii
ENSCPOG00000012350	POLR1A	95	79.462	ENSPCIG00000004222	POLR1A	99	79.075	Phascolarctos_cinereus
ENSCPOG00000012350	POLR1A	100	65.006	ENSPFOG00000005025	polr1a	100	64.713	Poecilia_formosa
ENSCPOG00000012350	POLR1A	100	65.447	ENSPLAG00000021389	polr1a	100	65.076	Poecilia_latipinna
ENSCPOG00000012350	POLR1A	100	63.146	ENSPMEG00000006463	polr1a	100	63.094	Poecilia_mexicana
ENSCPOG00000012350	POLR1A	100	65.197	ENSPREG00000002389	polr1a	100	64.849	Poecilia_reticulata
ENSCPOG00000012350	POLR1A	100	88.037	ENSPPYG00000012217	POLR1A	100	87.921	Pongo_abelii
ENSCPOG00000012350	POLR1A	92	96.000	ENSPCAG00000011582	POLR1A	92	96.000	Procavia_capensis
ENSCPOG00000012350	POLR1A	100	89.263	ENSPCOG00000026987	POLR1A	100	89.437	Propithecus_coquereli
ENSCPOG00000012350	POLR1A	95	89.781	ENSPVAG00000012674	POLR1A	95	89.123	Pteropus_vampyrus
ENSCPOG00000012350	POLR1A	100	66.395	ENSPNYG00000000026	polr1a	100	65.661	Pundamilia_nyererei
ENSCPOG00000012350	POLR1A	100	67.266	ENSPNAG00000019223	polr1a	100	67.073	Pygocentrus_nattereri
ENSCPOG00000012350	POLR1A	100	88.650	ENSRNOG00000009545	Polr1a	100	88.650	Rattus_norvegicus
ENSCPOG00000012350	POLR1A	100	87.979	ENSRBIG00000028335	POLR1A	100	88.153	Rhinopithecus_bieti
ENSCPOG00000012350	POLR1A	100	87.921	ENSRROG00000031473	POLR1A	100	88.095	Rhinopithecus_roxellana
ENSCPOG00000012350	POLR1A	99	37.571	YOR341W	RPA190	99	36.972	Saccharomyces_cerevisiae
ENSCPOG00000012350	POLR1A	100	87.515	ENSSBOG00000030262	POLR1A	100	87.689	Saimiri_boliviensis_boliviensis
ENSCPOG00000012350	POLR1A	100	72.999	ENSSHAG00000014739	POLR1A	100	72.874	Sarcophilus_harrisii
ENSCPOG00000012350	POLR1A	100	67.872	ENSSFOG00015019716	polr1a	100	67.930	Scleropages_formosus
ENSCPOG00000012350	POLR1A	100	65.476	ENSSMAG00000014342	polr1a	100	64.931	Scophthalmus_maximus
ENSCPOG00000012350	POLR1A	100	66.628	ENSSDUG00000014631	polr1a	100	66.474	Seriola_dumerili
ENSCPOG00000012350	POLR1A	100	65.111	ENSSLDG00000024095	polr1a	100	64.587	Seriola_lalandi_dorsalis
ENSCPOG00000012350	POLR1A	73	95.745	ENSSARG00000003136	-	76	95.745	Sorex_araneus
ENSCPOG00000012350	POLR1A	95	76.923	ENSSPUG00000004215	POLR1A	98	76.923	Sphenodon_punctatus
ENSCPOG00000012350	POLR1A	63	72.406	ENSSPAG00000016341	polr1a	94	72.406	Stegastes_partitus
ENSCPOG00000012350	POLR1A	83	89.769	ENSSSCG00000008226	POLR1A	99	89.740	Sus_scrofa
ENSCPOG00000012350	POLR1A	99	70.720	ENSTGUG00000010704	POLR1A	100	70.082	Taeniopygia_guttata
ENSCPOG00000012350	POLR1A	100	63.873	ENSTRUG00000002210	polr1a	97	65.268	Takifugu_rubripes
ENSCPOG00000012350	POLR1A	100	59.642	ENSTNIG00000010116	polr1a	100	59.642	Tetraodon_nigroviridis
ENSCPOG00000012350	POLR1A	74	95.133	ENSTBEG00000008646	POLR1A	74	95.133	Tupaia_belangeri
ENSCPOG00000012350	POLR1A	100	85.058	ENSTTRG00000008597	POLR1A	100	84.884	Tursiops_truncatus
ENSCPOG00000012350	POLR1A	69	89.077	ENSUAMG00000012158	-	94	89.077	Ursus_americanus
ENSCPOG00000012350	POLR1A	100	88.721	ENSUMAG00000006700	POLR1A	100	88.721	Ursus_maritimus
ENSCPOG00000012350	POLR1A	100	89.354	ENSVVUG00000001245	POLR1A	100	89.354	Vulpes_vulpes
ENSCPOG00000012350	POLR1A	100	67.591	ENSXETG00000001952	polr1a	100	67.690	Xenopus_tropicalis
ENSCPOG00000012350	POLR1A	100	65.545	ENSXMAG00000004032	polr1a	100	65.058	Xiphophorus_maculatus