EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCPOG00000012443 (Gene tree)
Gene ID: 100719120
Gene Symbol: SCAF4
Alias: DKFZp434E098|KIAA1172|SFRS15|SRA4
Full Name: SR-related CTD associated factor 4
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Plus strand
Length: 58762 bases
Position: chrDS562907.1:1767776-1826537
Accession: 100719120
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000011197	RRM_1	PF00076.22	2.7e-09	1	1
ENSCPOP00000031063	RRM_1	PF00076.22	2.7e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000012562	SCAF4-202	3387	-	ENSCPOP00000011197	1129 (aa)	-	H0VLG3
ENSCPOT00000032216	SCAF4-201	3895	XM_013149753	ENSCPOP00000031063	1136 (aa)	XP_013005207	A0A286Y029

Gene Model

Click here to download ENSCPOG00000012443's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000012443's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000012443	SCAF4	100	91.652	ENSG00000156304	SCAF4	100	91.388	Homo_sapiens
ENSCPOG00000012443	SCAF4	72	91.453	ENSAMEG00000014987	SCAF4	97	91.363	Ailuropoda_melanoleuca
ENSCPOG00000012443	SCAF4	99	74.061	ENSAPLG00000002509	SCAF4	59	81.970	Anas_platyrhynchos
ENSCPOG00000012443	SCAF4	95	69.464	ENSACAG00000002569	SCAF4	51	84.756	Anolis_carolinensis
ENSCPOG00000012443	SCAF4	100	89.655	ENSANAG00000037494	SCAF4	100	89.310	Aotus_nancymaae
ENSCPOG00000012443	SCAF4	97	47.733	ENSAMXG00000008585	scaf4a	60	62.033	Astyanax_mexicanus
ENSCPOG00000012443	SCAF4	100	87.759	ENSBTAG00000018855	SCAF4	100	87.586	Bos_taurus
ENSCPOG00000012443	SCAF4	100	89.914	ENSCJAG00000008993	SCAF4	99	90.877	Callithrix_jacchus
ENSCPOG00000012443	SCAF4	99	89.877	ENSCAFG00000008863	SCAF4	99	89.789	Canis_familiaris
ENSCPOG00000012443	SCAF4	99	87.633	ENSCAFG00020026019	SCAF4	100	88.549	Canis_lupus_dingo
ENSCPOG00000012443	SCAF4	100	87.565	ENSCHIG00000008385	SCAF4	100	87.759	Capra_hircus
ENSCPOG00000012443	SCAF4	92	91.236	ENSTSYG00000011344	SCAF4	98	91.160	Carlito_syrichta
ENSCPOG00000012443	SCAF4	100	89.828	ENSCCAG00000033727	SCAF4	100	89.310	Cebus_capucinus
ENSCPOG00000012443	SCAF4	100	89.310	ENSCATG00000030379	SCAF4	100	89.397	Cercocebus_atys
ENSCPOG00000012443	SCAF4	99	90.870	ENSCLAG00000006298	SCAF4	100	91.478	Chinchilla_lanigera
ENSCPOG00000012443	SCAF4	100	89.569	ENSCSAG00000009438	SCAF4	100	89.741	Chlorocebus_sabaeus
ENSCPOG00000012443	SCAF4	100	89.655	ENSCANG00000029847	SCAF4	100	89.397	Colobus_angolensis_palliatus
ENSCPOG00000012443	SCAF4	99	83.431	ENSCGRG00001020821	Scaf4	99	85.749	Cricetulus_griseus_chok1gshd
ENSCPOG00000012443	SCAF4	99	83.221	ENSCGRG00000014360	Scaf4	100	82.047	Cricetulus_griseus_crigri
ENSCPOG00000012443	SCAF4	100	86.075	ENSDNOG00000019014	SCAF4	94	86.510	Dasypus_novemcinctus
ENSCPOG00000012443	SCAF4	96	77.416	ENSETEG00000000583	SCAF4	99	76.965	Echinops_telfairi
ENSCPOG00000012443	SCAF4	100	89.560	ENSEASG00005007756	SCAF4	100	89.236	Equus_asinus_asinus
ENSCPOG00000012443	SCAF4	100	89.387	ENSECAG00000014248	SCAF4	100	89.215	Equus_caballus
ENSCPOG00000012443	SCAF4	57	52.667	ENSELUG00000002779	SCAF8	61	68.841	Esox_lucius
ENSCPOG00000012443	SCAF4	100	89.547	ENSFCAG00000002228	SCAF4	100	89.634	Felis_catus
ENSCPOG00000012443	SCAF4	99	90.854	ENSFDAG00000017780	SCAF4	100	90.941	Fukomys_damarensis
ENSCPOG00000012443	SCAF4	58	59.636	ENSFHEG00000007634	scaf4b	55	72.152	Fundulus_heteroclitus
ENSCPOG00000012443	SCAF4	100	74.261	ENSGALG00000033965	SCAF4	59	81.900	Gallus_gallus
ENSCPOG00000012443	SCAF4	93	89.237	ENSGGOG00000015557	SCAF4	100	91.717	Gorilla_gorilla
ENSCPOG00000012443	SCAF4	51	42.581	ENSHBUG00000007920	scaf4a	54	58.850	Haplochromis_burtoni
ENSCPOG00000012443	SCAF4	99	92.648	ENSHGLG00000010582	SCAF4	99	93.357	Heterocephalus_glaber_female
ENSCPOG00000012443	SCAF4	99	91.564	ENSHGLG00100009441	SCAF4	100	92.267	Heterocephalus_glaber_male
ENSCPOG00000012443	SCAF4	70	56.667	ENSIPUG00000011285	scaf4	63	62.704	Ictalurus_punctatus
ENSCPOG00000012443	SCAF4	99	85.549	ENSSTOG00000004450	SCAF4	100	86.530	Ictidomys_tridecemlineatus
ENSCPOG00000012443	SCAF4	99	86.527	ENSJJAG00000019447	Scaf4	100	86.614	Jaculus_jaculus
ENSCPOG00000012443	SCAF4	60	57.500	ENSKMAG00000005742	scaf4b	54	74.522	Kryptolebias_marmoratus
ENSCPOG00000012443	SCAF4	96	60.492	ENSLACG00000013913	SCAF4	59	67.647	Latimeria_chalumnae
ENSCPOG00000012443	SCAF4	95	56.875	ENSLOCG00000009162	scaf4a	59	66.079	Lepisosteus_oculatus
ENSCPOG00000012443	SCAF4	99	91.736	ENSLAFG00000010710	SCAF4	99	89.771	Loxodonta_africana
ENSCPOG00000012443	SCAF4	100	89.596	ENSMFAG00000037668	SCAF4	100	89.338	Macaca_fascicularis
ENSCPOG00000012443	SCAF4	100	89.510	ENSMMUG00000001712	SCAF4	100	89.252	Macaca_mulatta
ENSCPOG00000012443	SCAF4	100	89.433	ENSMNEG00000032966	SCAF4	100	89.433	Macaca_nemestrina
ENSCPOG00000012443	SCAF4	99	89.401	ENSMLEG00000039674	SCAF4	100	89.574	Mandrillus_leucophaeus
ENSCPOG00000012443	SCAF4	71	54.726	ENSMZEG00005024349	scaf4a	55	61.161	Maylandia_zebra
ENSCPOG00000012443	SCAF4	99	75.000	ENSMGAG00000014515	SCAF4	59	81.804	Meleagris_gallopavo
ENSCPOG00000012443	SCAF4	99	86.849	ENSMAUG00000013307	Scaf4	100	87.114	Mesocricetus_auratus
ENSCPOG00000012443	SCAF4	100	90.078	ENSMICG00000005256	SCAF4	100	89.301	Microcebus_murinus
ENSCPOG00000012443	SCAF4	100	83.391	ENSMOCG00000012087	Scaf4	96	89.974	Microtus_ochrogaster
ENSCPOG00000012443	SCAF4	100	81.588	ENSMODG00000021040	SCAF4	100	81.414	Monodelphis_domestica
ENSCPOG00000012443	SCAF4	100	86.812	MGP_CAROLIEiJ_G0020944	Scaf4	96	88.447	Mus_caroli
ENSCPOG00000012443	SCAF4	100	88.258	ENSMUSG00000022983	Scaf4	96	88.387	Mus_musculus
ENSCPOG00000012443	SCAF4	98	88.105	MGP_PahariEiJ_G0016649	Scaf4	100	82.921	Mus_pahari
ENSCPOG00000012443	SCAF4	100	87.973	ENSMPUG00000001078	SCAF4	100	87.887	Mustela_putorius_furo
ENSCPOG00000012443	SCAF4	99	77.145	ENSMLUG00000011472	SCAF4	99	76.943	Myotis_lucifugus
ENSCPOG00000012443	SCAF4	99	89.192	ENSNGAG00000005214	Scaf4	99	89.279	Nannospalax_galili
ENSCPOG00000012443	SCAF4	100	90.172	ENSNLEG00000003569	SCAF4	100	89.138	Nomascus_leucogenys
ENSCPOG00000012443	SCAF4	79	90.761	ENSOPRG00000007016	SCAF4	77	90.217	Ochotona_princeps
ENSCPOG00000012443	SCAF4	99	91.573	ENSODEG00000002718	SCAF4	99	91.659	Octodon_degus
ENSCPOG00000012443	SCAF4	70	57.506	ENSONIG00000004687	scaf4a	51	73.780	Oreochromis_niloticus
ENSCPOG00000012443	SCAF4	100	89.982	ENSOCUG00000008336	SCAF4	100	89.719	Oryctolagus_cuniculus
ENSCPOG00000012443	SCAF4	99	91.530	ENSOGAG00000014653	SCAF4	94	91.656	Otolemur_garnettii
ENSCPOG00000012443	SCAF4	99	88.127	ENSOARG00000013894	SCAF4	99	87.684	Ovis_aries
ENSCPOG00000012443	SCAF4	100	89.828	ENSPPAG00000028535	SCAF4	100	89.569	Pan_paniscus
ENSCPOG00000012443	SCAF4	99	90.229	ENSPPRG00000000635	SCAF4	100	90.053	Panthera_pardus
ENSCPOG00000012443	SCAF4	99	86.655	ENSPTIG00000021578	SCAF4	99	84.851	Panthera_tigris_altaica
ENSCPOG00000012443	SCAF4	100	89.828	ENSPTRG00000013848	SCAF4	100	89.569	Pan_troglodytes
ENSCPOG00000012443	SCAF4	100	89.338	ENSPANG00000017332	SCAF4	100	89.596	Papio_anubis
ENSCPOG00000012443	SCAF4	65	62.565	ENSPKIG00000022408	scaf4a	90	65.333	Paramormyrops_kingsleyae
ENSCPOG00000012443	SCAF4	99	75.397	ENSPSIG00000014242	SCAF4	86	82.695	Pelodiscus_sinensis
ENSCPOG00000012443	SCAF4	99	82.165	ENSPCIG00000028183	SCAF4	91	81.810	Phascolarctos_cinereus
ENSCPOG00000012443	SCAF4	69	54.798	ENSPFOG00000017156	scaf4a	52	79.167	Poecilia_formosa
ENSCPOG00000012443	SCAF4	100	90.000	ENSPPYG00000011355	SCAF4	100	89.655	Pongo_abelii
ENSCPOG00000012443	SCAF4	93	93.214	ENSPCAG00000009998	SCAF4	93	86.620	Procavia_capensis
ENSCPOG00000012443	SCAF4	100	90.078	ENSPCOG00000018710	SCAF4	100	89.905	Propithecus_coquereli
ENSCPOG00000012443	SCAF4	100	88.338	ENSPVAG00000005220	SCAF4	100	88.425	Pteropus_vampyrus
ENSCPOG00000012443	SCAF4	75	57.666	ENSPNAG00000016892	scaf4a	60	62.222	Pygocentrus_nattereri
ENSCPOG00000012443	SCAF4	98	87.668	ENSRNOG00000002104	Scaf4	99	82.432	Rattus_norvegicus
ENSCPOG00000012443	SCAF4	99	87.609	ENSRBIG00000040007	SCAF4	61	91.629	Rhinopithecus_bieti
ENSCPOG00000012443	SCAF4	100	89.828	ENSRROG00000029488	SCAF4	100	89.828	Rhinopithecus_roxellana
ENSCPOG00000012443	SCAF4	99	82.332	ENSSHAG00000001581	SCAF4	99	81.979	Sarcophilus_harrisii
ENSCPOG00000012443	SCAF4	87	46.699	ENSSFOG00015006338	scaf4a	54	56.498	Scleropages_formosus
ENSCPOG00000012443	SCAF4	66	57.993	ENSSMAG00000003738	scaf4b	54	71.429	Scophthalmus_maximus
ENSCPOG00000012443	SCAF4	63	60.595	ENSSDUG00000012380	scaf4b	51	78.417	Seriola_dumerili
ENSCPOG00000012443	SCAF4	100	85.542	ENSSARG00000009994	SCAF4	100	86.145	Sorex_araneus
ENSCPOG00000012443	SCAF4	100	90.685	ENSSSCG00000021023	SCAF4	100	90.510	Sus_scrofa
ENSCPOG00000012443	SCAF4	75	78.978	ENSTGUG00000013464	SCAF4	57	85.382	Taeniopygia_guttata
ENSCPOG00000012443	SCAF4	50	58.015	ENSTRUG00000009536	-	65	58.182	Takifugu_rubripes
ENSCPOG00000012443	SCAF4	99	88.664	ENSTTRG00000010963	SCAF4	100	88.401	Tursiops_truncatus
ENSCPOG00000012443	SCAF4	100	90.413	ENSUAMG00000008860	SCAF4	100	89.974	Ursus_americanus
ENSCPOG00000012443	SCAF4	99	87.844	ENSUMAG00000016962	SCAF4	100	88.465	Ursus_maritimus
ENSCPOG00000012443	SCAF4	99	89.841	ENSVVUG00000002953	SCAF4	100	89.753	Vulpes_vulpes
ENSCPOG00000012443	SCAF4	99	56.698	ENSXETG00000007351	scaf4	63	65.963	Xenopus_tropicalis