EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPOG00000012781 (Gene tree)
Gene ID: 100724532
Gene Symbol: RBM38
Alias: HSRNASEB|RNPC1|SEB4D|dJ800J21.2|seb4B
Full Name: RNA binding motif protein 38
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Minus strand
Length: 13676 bases
Position: chrDS562951.1:117677-131352
Accession: 100724532
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000024176	RRM_1	PF00076.22	8.2e-19	1	1
ENSCPOP00000011503	RRM_1	PF00076.22	8.9e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000040477	RBM38-201	2060	XM_003463640	ENSCPOP00000024176	239 (aa)	XP_003463688	A0A286XFI6
ENSCPOT00000040929	RBM38-203	90	-	ENSCPOP00000031199	29 (aa)	-	A0A286Y063
ENSCPOT00000012906	RBM38-202	1947	-	ENSCPOP00000011503	247 (aa)	-	H0VM81

Gene Model

Click here to download ENSCPOG00000012781's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000012781's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPOG00000012781	RBM38	59	36.842	ENSCPOG00000012361	MSI1	72	36.842
ENSCPOG00000012781	RBM38	62	80.263	ENSCPOG00000038459	RBM24	100	68.067

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000012781	RBM38	100	96.234	ENSG00000132819	RBM38	100	99.174	Homo_sapiens
ENSCPOG00000012781	RBM38	91	66.667	ENSAPOG00000009939	-	94	67.117	Acanthochromis_polyacanthus
ENSCPOG00000012781	RBM38	89	59.914	ENSAPOG00000003301	rbm38	91	59.914	Acanthochromis_polyacanthus
ENSCPOG00000012781	RBM38	89	57.511	ENSACIG00000000010	rbm38	91	57.511	Amphilophus_citrinellus
ENSCPOG00000012781	RBM38	89	69.266	ENSACIG00000012502	-	100	88.034	Amphilophus_citrinellus
ENSCPOG00000012781	RBM38	89	59.914	ENSAOCG00000013497	-	91	59.914	Amphiprion_ocellaris
ENSCPOG00000012781	RBM38	99	62.551	ENSAOCG00000012559	RBM38	99	63.115	Amphiprion_ocellaris
ENSCPOG00000012781	RBM38	91	63.598	ENSAPEG00000023581	-	95	64.286	Amphiprion_percula
ENSCPOG00000012781	RBM38	99	61.066	ENSAPEG00000013137	rbm38	99	61.066	Amphiprion_percula
ENSCPOG00000012781	RBM38	89	64.935	ENSATEG00000016710	-	92	65.948	Anabas_testudineus
ENSCPOG00000012781	RBM38	90	61.161	ENSATEG00000016366	rbm38	94	61.161	Anabas_testudineus
ENSCPOG00000012781	RBM38	91	78.636	ENSACAG00000016238	RBM38	97	75.000	Anolis_carolinensis
ENSCPOG00000012781	RBM38	90	94.907	ENSANAG00000031959	RBM38	100	100.000	Aotus_nancymaae
ENSCPOG00000012781	RBM38	89	66.234	ENSACLG00000019514	-	92	66.379	Astatotilapia_calliptera
ENSCPOG00000012781	RBM38	86	56.444	ENSAMXG00000038120	rbm38	91	56.889	Astyanax_mexicanus
ENSCPOG00000012781	RBM38	91	66.957	ENSAMXG00000015601	-	95	67.826	Astyanax_mexicanus
ENSCPOG00000012781	RBM38	100	94.142	ENSBTAG00000008105	RBM38	100	94.142	Bos_taurus
ENSCPOG00000012781	RBM38	58	62.319	WBGene00006321	sup-12	59	85.393	Caenorhabditis_elegans
ENSCPOG00000012781	RBM38	100	95.397	ENSCJAG00000019139	RBM38	100	100.000	Callithrix_jacchus
ENSCPOG00000012781	RBM38	100	96.234	ENSCAFG00020021943	RBM38	100	96.234	Canis_lupus_dingo
ENSCPOG00000012781	RBM38	100	93.305	ENSCHIG00000002609	RBM38	100	93.305	Capra_hircus
ENSCPOG00000012781	RBM38	100	95.397	ENSCCAG00000036872	RBM38	100	100.000	Cebus_capucinus
ENSCPOG00000012781	RBM38	100	95.816	ENSCATG00000032133	RBM38	100	100.000	Cercocebus_atys
ENSCPOG00000012781	RBM38	96	98.261	ENSCLAG00000005906	RBM38	100	98.261	Chinchilla_lanigera
ENSCPOG00000012781	RBM38	100	95.816	ENSCSAG00000015503	RBM38	100	95.816	Chlorocebus_sabaeus
ENSCPOG00000012781	RBM38	90	81.651	ENSCPBG00000024059	RBM38	100	81.651	Chrysemys_picta_bellii
ENSCPOG00000012781	RBM38	99	73.950	ENSCANG00000030105	-	89	73.950	Colobus_angolensis_palliatus
ENSCPOG00000012781	RBM38	100	92.469	ENSCGRG00001012928	Rbm38	100	92.469	Cricetulus_griseus_chok1gshd
ENSCPOG00000012781	RBM38	62	68.667	ENSCSEG00000020943	rbm38	60	61.413	Cynoglossus_semilaevis
ENSCPOG00000012781	RBM38	89	70.320	ENSCSEG00000004701	-	93	70.909	Cynoglossus_semilaevis
ENSCPOG00000012781	RBM38	89	59.227	ENSCVAG00000015952	rbm38	91	60.345	Cyprinodon_variegatus
ENSCPOG00000012781	RBM38	89	67.382	ENSCVAG00000005472	-	92	67.660	Cyprinodon_variegatus
ENSCPOG00000012781	RBM38	88	64.126	ENSDARG00000058818	rbm38	92	64.126	Danio_rerio
ENSCPOG00000012781	RBM38	90	88.889	ENSDNOG00000032004	RBM38	100	88.889	Dasypus_novemcinctus
ENSCPOG00000012781	RBM38	61	67.808	ENSEBUG00000015164	rbm38	88	67.808	Eptatretus_burgeri
ENSCPOG00000012781	RBM38	100	94.142	ENSECAG00000007700	RBM38	100	94.142	Equus_caballus
ENSCPOG00000012781	RBM38	100	92.083	ENSEEUG00000013489	RBM38	100	93.333	Erinaceus_europaeus
ENSCPOG00000012781	RBM38	84	65.174	ENSELUG00000000585	-	87	65.174	Esox_lucius
ENSCPOG00000012781	RBM38	90	65.823	ENSELUG00000005849	-	95	65.823	Esox_lucius
ENSCPOG00000012781	RBM38	100	95.397	ENSFCAG00000042916	RBM38	100	98.347	Felis_catus
ENSCPOG00000012781	RBM38	74	84.831	ENSFALG00000010805	RBM38	99	81.250	Ficedula_albicollis
ENSCPOG00000012781	RBM38	89	57.940	ENSFHEG00000017748	rbm38	91	57.940	Fundulus_heteroclitus
ENSCPOG00000012781	RBM38	89	71.296	ENSFHEG00000006160	-	92	71.296	Fundulus_heteroclitus
ENSCPOG00000012781	RBM38	75	70.718	ENSGMOG00000016655	-	96	74.176	Gadus_morhua
ENSCPOG00000012781	RBM38	90	79.358	ENSGALG00000026081	RBM38	100	79.358	Gallus_gallus
ENSCPOG00000012781	RBM38	89	63.208	ENSGACG00000015224	rbm38	98	63.208	Gasterosteus_aculeatus
ENSCPOG00000012781	RBM38	90	67.857	ENSGACG00000009873	-	100	67.556	Gasterosteus_aculeatus
ENSCPOG00000012781	RBM38	90	82.110	ENSGAGG00000001187	RBM38	100	82.110	Gopherus_agassizii
ENSCPOG00000012781	RBM38	96	60.251	ENSHBUG00000012058	rbm38	98	60.251	Haplochromis_burtoni
ENSCPOG00000012781	RBM38	89	70.642	ENSHBUG00000011778	-	92	70.776	Haplochromis_burtoni
ENSCPOG00000012781	RBM38	100	94.979	ENSHGLG00000015077	RBM38	100	94.979	Heterocephalus_glaber_female
ENSCPOG00000012781	RBM38	79	71.354	ENSHCOG00000005622	-	54	72.917	Hippocampus_comes
ENSCPOG00000012781	RBM38	69	64.072	ENSHCOG00000019040	rbm38	70	64.072	Hippocampus_comes
ENSCPOG00000012781	RBM38	91	66.379	ENSIPUG00000019349	-	95	66.379	Ictalurus_punctatus
ENSCPOG00000012781	RBM38	88	53.814	ENSKMAG00000012402	rbm38	98	54.237	Kryptolebias_marmoratus
ENSCPOG00000012781	RBM38	89	59.227	ENSLBEG00000018878	rbm38	91	59.227	Labrus_bergylta
ENSCPOG00000012781	RBM38	89	68.807	ENSLBEG00000016163	RBM38	92	69.406	Labrus_bergylta
ENSCPOG00000012781	RBM38	91	71.556	ENSLOCG00000003456	rbm38	95	71.556	Lepisosteus_oculatus
ENSCPOG00000012781	RBM38	98	95.745	ENSMFAG00000043808	RBM38	97	100.000	Macaca_fascicularis
ENSCPOG00000012781	RBM38	100	95.816	ENSMMUG00000031391	RBM38	100	100.000	Macaca_mulatta
ENSCPOG00000012781	RBM38	100	95.816	ENSMNEG00000034683	RBM38	100	100.000	Macaca_nemestrina
ENSCPOG00000012781	RBM38	89	59.227	ENSMAMG00000024135	rbm38	91	59.227	Mastacembelus_armatus
ENSCPOG00000012781	RBM38	91	64.135	ENSMAMG00000020499	RBM38	95	65.823	Mastacembelus_armatus
ENSCPOG00000012781	RBM38	89	58.369	ENSMZEG00005026036	rbm38	91	58.369	Maylandia_zebra
ENSCPOG00000012781	RBM38	89	70.642	ENSMZEG00005000849	-	92	70.776	Maylandia_zebra
ENSCPOG00000012781	RBM38	100	92.887	ENSMAUG00000021211	Rbm38	100	92.887	Mesocricetus_auratus
ENSCPOG00000012781	RBM38	90	96.296	ENSMICG00000038011	RBM38	100	96.296	Microcebus_murinus
ENSCPOG00000012781	RBM38	100	92.050	ENSMOCG00000008715	Rbm38	100	92.050	Microtus_ochrogaster
ENSCPOG00000012781	RBM38	99	66.527	ENSMMOG00000020051	-	99	66.667	Mola_mola
ENSCPOG00000012781	RBM38	100	79.253	ENSMODG00000016458	RBM38	100	79.253	Monodelphis_domestica
ENSCPOG00000012781	RBM38	64	70.968	ENSMALG00000022327	rbm38	67	70.968	Monopterus_albus
ENSCPOG00000012781	RBM38	77	73.545	ENSMALG00000004680	RBM38	70	73.545	Monopterus_albus
ENSCPOG00000012781	RBM38	100	93.305	MGP_CAROLIEiJ_G0024745	Rbm38	100	93.305	Mus_caroli
ENSCPOG00000012781	RBM38	100	93.724	ENSMUSG00000027510	Rbm38	100	93.724	Mus_musculus
ENSCPOG00000012781	RBM38	100	93.305	MGP_PahariEiJ_G0026186	Rbm38	100	93.305	Mus_pahari
ENSCPOG00000012781	RBM38	100	93.305	MGP_SPRETEiJ_G0025665	Rbm38	100	93.305	Mus_spretus
ENSCPOG00000012781	RBM38	77	96.757	ENSMPUG00000006518	RBM38	93	96.791	Mustela_putorius_furo
ENSCPOG00000012781	RBM38	90	90.278	ENSMLUG00000011140	RBM38	100	90.278	Myotis_lucifugus
ENSCPOG00000012781	RBM38	89	66.810	ENSNBRG00000022545	-	92	66.953	Neolamprologus_brichardi
ENSCPOG00000012781	RBM38	96	60.417	ENSNBRG00000022685	rbm38	98	60.417	Neolamprologus_brichardi
ENSCPOG00000012781	RBM38	58	79.710	ENSMEUG00000005475	-	100	79.710	Notamacropus_eugenii
ENSCPOG00000012781	RBM38	100	98.326	ENSODEG00000007980	RBM38	100	98.326	Octodon_degus
ENSCPOG00000012781	RBM38	88	66.667	ENSONIG00000020324	-	92	66.810	Oreochromis_niloticus
ENSCPOG00000012781	RBM38	88	58.621	ENSONIG00000017073	rbm38	93	58.621	Oreochromis_niloticus
ENSCPOG00000012781	RBM38	97	78.448	ENSOANG00000009259	RBM38	90	77.542	Ornithorhynchus_anatinus
ENSCPOG00000012781	RBM38	89	56.410	ENSORLG00000012154	rbm38	91	55.556	Oryzias_latipes
ENSCPOG00000012781	RBM38	89	63.948	ENSORLG00000027180	-	92	65.236	Oryzias_latipes
ENSCPOG00000012781	RBM38	89	56.410	ENSORLG00020017871	rbm38	91	56.410	Oryzias_latipes_hni
ENSCPOG00000012781	RBM38	89	63.948	ENSORLG00020020751	-	95	62.903	Oryzias_latipes_hni
ENSCPOG00000012781	RBM38	89	64.224	ENSORLG00015017040	-	92	65.517	Oryzias_latipes_hsok
ENSCPOG00000012781	RBM38	97	57.872	ENSORLG00015012606	rbm38	97	57.872	Oryzias_latipes_hsok
ENSCPOG00000012781	RBM38	89	56.410	ENSOMEG00000006805	rbm38	91	56.410	Oryzias_melastigma
ENSCPOG00000012781	RBM38	89	64.069	ENSOMEG00000023912	-	92	64.502	Oryzias_melastigma
ENSCPOG00000012781	RBM38	100	96.667	ENSOGAG00000029136	RBM38	100	96.667	Otolemur_garnettii
ENSCPOG00000012781	RBM38	100	95.397	ENSPPRG00000009507	RBM38	100	98.347	Panthera_pardus
ENSCPOG00000012781	RBM38	87	93.269	ENSPTRG00000013661	RBM38	100	99.174	Pan_troglodytes
ENSCPOG00000012781	RBM38	52	99.194	ENSPTRG00000045845	-	68	99.194	Pan_troglodytes
ENSCPOG00000012781	RBM38	100	95.816	ENSPANG00000020919	-	100	100.000	Papio_anubis
ENSCPOG00000012781	RBM38	99	73.109	ENSPANG00000033127	-	100	73.109	Papio_anubis
ENSCPOG00000012781	RBM38	94	63.525	ENSPKIG00000025417	rbm38	98	63.525	Paramormyrops_kingsleyae
ENSCPOG00000012781	RBM38	91	67.699	ENSPKIG00000018122	-	100	88.889	Paramormyrops_kingsleyae
ENSCPOG00000012781	RBM38	93	80.804	ENSPSIG00000011649	RBM38	95	80.804	Pelodiscus_sinensis
ENSCPOG00000012781	RBM38	89	61.373	ENSPMGG00000017094	-	92	61.966	Periophthalmus_magnuspinnatus
ENSCPOG00000012781	RBM38	90	56.485	ENSPMGG00000011343	rbm38	94	57.741	Periophthalmus_magnuspinnatus
ENSCPOG00000012781	RBM38	100	79.253	ENSPCIG00000013648	RBM38	100	79.253	Phascolarctos_cinereus
ENSCPOG00000012781	RBM38	89	56.410	ENSPFOG00000011658	rbm38	91	58.547	Poecilia_formosa
ENSCPOG00000012781	RBM38	89	57.265	ENSPLAG00000005218	rbm38	91	58.547	Poecilia_latipinna
ENSCPOG00000012781	RBM38	89	67.511	ENSPLAG00000002500	-	92	68.220	Poecilia_latipinna
ENSCPOG00000012781	RBM38	89	56.410	ENSPMEG00000015770	rbm38	91	58.547	Poecilia_mexicana
ENSCPOG00000012781	RBM38	89	56.838	ENSPREG00000007398	rbm38	91	58.974	Poecilia_reticulata
ENSCPOG00000012781	RBM38	100	96.667	ENSPCOG00000026201	RBM38	100	99.180	Propithecus_coquereli
ENSCPOG00000012781	RBM38	100	67.364	ENSPVAG00000006457	RBM38	100	67.364	Pteropus_vampyrus
ENSCPOG00000012781	RBM38	89	70.642	ENSPNYG00000019727	-	100	88.889	Pundamilia_nyererei
ENSCPOG00000012781	RBM38	96	59.494	ENSPNYG00000021373	rbm38	98	60.251	Pundamilia_nyererei
ENSCPOG00000012781	RBM38	85	65.728	ENSPNAG00000010596	rbm38	88	65.728	Pygocentrus_nattereri
ENSCPOG00000012781	RBM38	91	67.391	ENSPNAG00000015123	-	96	78.030	Pygocentrus_nattereri
ENSCPOG00000012781	RBM38	100	93.724	ENSRNOG00000006420	Rbm38	100	93.724	Rattus_norvegicus
ENSCPOG00000012781	RBM38	100	78.243	ENSRROG00000036388	-	100	78.243	Rhinopithecus_roxellana
ENSCPOG00000012781	RBM38	90	94.444	ENSSBOG00000031053	RBM38	100	100.000	Saimiri_boliviensis_boliviensis
ENSCPOG00000012781	RBM38	89	66.818	ENSSFOG00015004453	rbm38	92	70.000	Scleropages_formosus
ENSCPOG00000012781	RBM38	89	60.515	ENSSDUG00000022611	rbm38	91	60.515	Seriola_dumerili
ENSCPOG00000012781	RBM38	89	66.094	ENSSDUG00000021082	RBM38	92	66.524	Seriola_dumerili
ENSCPOG00000012781	RBM38	89	66.094	ENSSLDG00000011778	RBM38	92	66.524	Seriola_lalandi_dorsalis
ENSCPOG00000012781	RBM38	89	63.256	ENSSLDG00000010845	rbm38	90	63.256	Seriola_lalandi_dorsalis
ENSCPOG00000012781	RBM38	89	68.075	ENSSPAG00000020989	RBM38	91	69.302	Stegastes_partitus
ENSCPOG00000012781	RBM38	89	59.657	ENSSPAG00000011113	rbm38	91	59.657	Stegastes_partitus
ENSCPOG00000012781	RBM38	100	96.653	ENSSSCG00000007504	RBM38	100	96.653	Sus_scrofa
ENSCPOG00000012781	RBM38	89	65.948	ENSTRUG00000019869	-	92	66.953	Takifugu_rubripes
ENSCPOG00000012781	RBM38	89	57.205	ENSTRUG00000024954	rbm38	91	56.769	Takifugu_rubripes
ENSCPOG00000012781	RBM38	89	69.683	ENSTNIG00000007093	-	97	70.270	Tetraodon_nigroviridis
ENSCPOG00000012781	RBM38	50	89.916	ENSTBEG00000001689	-	50	89.916	Tupaia_belangeri
ENSCPOG00000012781	RBM38	100	96.653	ENSUAMG00000019780	RBM38	100	96.653	Ursus_americanus
ENSCPOG00000012781	RBM38	100	96.234	ENSVVUG00000017246	RBM38	100	96.234	Vulpes_vulpes
ENSCPOG00000012781	RBM38	92	73.333	ENSXETG00000011268	rbm38	100	73.778	Xenopus_tropicalis
ENSCPOG00000012781	RBM38	89	58.798	ENSXMAG00000023662	rbm38	91	58.798	Xiphophorus_maculatus