EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPOG00000012784 (Gene tree)
Gene ID: 100735698
Gene Symbol: R3HDM1
Alias: KIAA0029|R3HDM
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Minus strand
Length: 93517 bases
Position: chrDS562858.1:51201056-51294572
Accession: 100735698
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000025672	R3H	PF01424.22	2.6e-12	1	1
ENSCPOP00000025666	R3H	PF01424.22	5.7e-12	1	1
ENSCPOP00000011504	R3H	PF01424.22	1.7e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000012909	R3HDM1-201	3384	XM_013142346	ENSCPOP00000011504	1127 (aa)	-	H0VM82
ENSCPOT00000044417	R3HDM1-202	1161	-	ENSCPOP00000021475	387 (aa)	-	A0A286X7S4
ENSCPOT00000039326	R3HDM1-203	1392	-	ENSCPOP00000025666	464 (aa)	-	A0A286XJS7
ENSCPOT00000032121	R3HDM1-204	831	-	ENSCPOP00000025672	277 (aa)	-	A0A286XJK5

Gene Model

Click here to download ENSCPOG00000012784's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000012784's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPOG00000012784	R3HDM1	88	59.276	ENSCPOG00000008780	ARPP21	88	50.064
ENSCPOG00000012784	R3HDM1	99	46.840	ENSCPOG00000009217	R3HDM2	96	54.768

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000012784	R3HDM1	100	94.304	ENSG00000048991	R3HDM1	99	91.889	Homo_sapiens
ENSCPOG00000012784	R3HDM1	100	61.204	ENSAPOG00000020850	r3hdm1	97	48.516	Acanthochromis_polyacanthus
ENSCPOG00000012784	R3HDM1	100	89.982	ENSAMEG00000014886	R3HDM1	100	89.895	Ailuropoda_melanoleuca
ENSCPOG00000012784	R3HDM1	92	56.621	ENSACIG00000018791	-	81	58.603	Amphilophus_citrinellus
ENSCPOG00000012784	R3HDM1	100	60.870	ENSAOCG00000005192	r3hdm1	99	47.911	Amphiprion_ocellaris
ENSCPOG00000012784	R3HDM1	100	59.206	ENSAPEG00000016108	r3hdm1	99	46.011	Amphiprion_percula
ENSCPOG00000012784	R3HDM1	100	59.206	ENSATEG00000000232	r3hdm1	99	46.805	Anabas_testudineus
ENSCPOG00000012784	R3HDM1	100	74.912	ENSAPLG00000015231	R3HDM1	100	75.263	Anas_platyrhynchos
ENSCPOG00000012784	R3HDM1	100	76.507	ENSACAG00000001676	R3HDM1	100	76.769	Anolis_carolinensis
ENSCPOG00000012784	R3HDM1	100	92.405	ENSANAG00000035334	R3HDM1	100	89.192	Aotus_nancymaae
ENSCPOG00000012784	R3HDM1	100	56.679	ENSACLG00000027282	r3hdm1	99	45.109	Astatotilapia_calliptera
ENSCPOG00000012784	R3HDM1	100	53.250	ENSAMXG00000003536	r3hdm1	100	59.441	Astyanax_mexicanus
ENSCPOG00000012784	R3HDM1	79	55.844	ENSAMXG00000020587	arpp21	79	58.130	Astyanax_mexicanus
ENSCPOG00000012784	R3HDM1	99	65.359	ENSAMXG00000012861	R3HDM1	100	69.231	Astyanax_mexicanus
ENSCPOG00000012784	R3HDM1	100	92.098	ENSBTAG00000013302	R3HDM1	100	92.186	Bos_taurus
ENSCPOG00000012784	R3HDM1	100	92.405	ENSCJAG00000011718	R3HDM1	100	88.928	Callithrix_jacchus
ENSCPOG00000012784	R3HDM1	100	90.246	ENSCAFG00000005075	R3HDM1	100	90.158	Canis_familiaris
ENSCPOG00000012784	R3HDM1	100	93.146	ENSCAFG00020016119	R3HDM1	100	93.058	Canis_lupus_dingo
ENSCPOG00000012784	R3HDM1	100	92.098	ENSCHIG00000020851	R3HDM1	100	92.186	Capra_hircus
ENSCPOG00000012784	R3HDM1	100	89.531	ENSCAPG00000013043	-	100	89.531	Cavia_aperea
ENSCPOG00000012784	R3HDM1	100	92.616	ENSCCAG00000027199	R3HDM1	100	88.840	Cebus_capucinus
ENSCPOG00000012784	R3HDM1	100	92.362	ENSCATG00000023642	R3HDM1	100	92.274	Cercocebus_atys
ENSCPOG00000012784	R3HDM1	100	94.515	ENSCLAG00000007962	R3HDM1	100	94.019	Chinchilla_lanigera
ENSCPOG00000012784	R3HDM1	100	92.274	ENSCSAG00000016356	R3HDM1	100	92.186	Chlorocebus_sabaeus
ENSCPOG00000012784	R3HDM1	87	77.647	ENSCHOG00000013638	R3HDM1	91	77.647	Choloepus_hoffmanni
ENSCPOG00000012784	R3HDM1	89	81.446	ENSCPBG00000009645	R3HDM1	99	91.011	Chrysemys_picta_bellii
ENSCPOG00000012784	R3HDM1	100	88.928	ENSCANG00000034748	R3HDM1	100	89.279	Colobus_angolensis_palliatus
ENSCPOG00000012784	R3HDM1	99	90.476	ENSCGRG00001012357	R3hdm1	97	90.476	Cricetulus_griseus_chok1gshd
ENSCPOG00000012784	R3HDM1	100	91.983	ENSCGRG00000012080	R3hdm1	100	91.638	Cricetulus_griseus_crigri
ENSCPOG00000012784	R3HDM1	100	55.516	ENSCSEG00000008944	r3hdm1	99	42.543	Cynoglossus_semilaevis
ENSCPOG00000012784	R3HDM1	100	60.535	ENSCVAG00000007582	r3hdm1	99	47.130	Cyprinodon_variegatus
ENSCPOG00000012784	R3HDM1	78	55.066	ENSDARG00000061081	arpp21	87	36.364	Danio_rerio
ENSCPOG00000012784	R3HDM1	100	85.764	ENSDNOG00000000771	R3HDM1	100	85.764	Dasypus_novemcinctus
ENSCPOG00000012784	R3HDM1	100	92.683	ENSDORG00000027689	-	100	92.683	Dipodomys_ordii
ENSCPOG00000012784	R3HDM1	100	83.721	ENSETEG00000013606	R3HDM1	100	77.788	Echinops_telfairi
ENSCPOG00000012784	R3HDM1	89	49.107	ENSEBUG00000014746	arpp21	97	40.346	Eptatretus_burgeri
ENSCPOG00000012784	R3HDM1	100	92.531	ENSEASG00005007392	R3HDM1	100	93.103	Equus_asinus_asinus
ENSCPOG00000012784	R3HDM1	100	92.619	ENSECAG00000019114	R3HDM1	100	93.103	Equus_caballus
ENSCPOG00000012784	R3HDM1	95	83.814	ENSEEUG00000012589	R3HDM1	91	83.579	Erinaceus_europaeus
ENSCPOG00000012784	R3HDM1	76	72.897	ENSELUG00000014413	r3hdm1	100	50.264	Esox_lucius
ENSCPOG00000012784	R3HDM1	86	70.991	ENSELUG00000004909	R3HDM1	99	53.364	Esox_lucius
ENSCPOG00000012784	R3HDM1	100	93.882	ENSFCAG00000027113	R3HDM1	100	93.596	Felis_catus
ENSCPOG00000012784	R3HDM1	95	80.795	ENSFALG00000013731	R3HDM1	93	68.817	Ficedula_albicollis
ENSCPOG00000012784	R3HDM1	100	94.093	ENSFDAG00000016478	R3HDM1	100	93.755	Fukomys_damarensis
ENSCPOG00000012784	R3HDM1	100	62.457	ENSFHEG00000018713	r3hdm1	100	46.686	Fundulus_heteroclitus
ENSCPOG00000012784	R3HDM1	81	71.883	ENSGMOG00000006042	-	74	68.831	Gadus_morhua
ENSCPOG00000012784	R3HDM1	100	69.896	ENSGALG00000012246	R3HDM1	99	81.967	Gallus_gallus
ENSCPOG00000012784	R3HDM1	91	59.152	ENSGAFG00000006203	r3hdm1	94	46.258	Gambusia_affinis
ENSCPOG00000012784	R3HDM1	79	69.068	ENSGACG00000014925	r3hdm1	99	48.989	Gasterosteus_aculeatus
ENSCPOG00000012784	R3HDM1	100	82.119	ENSGAGG00000007840	R3HDM1	96	80.451	Gopherus_agassizii
ENSCPOG00000012784	R3HDM1	100	94.304	ENSGGOG00000008156	R3HDM1	100	89.279	Gorilla_gorilla
ENSCPOG00000012784	R3HDM1	100	59.868	ENSHBUG00000015737	R3HDM1	90	56.333	Haplochromis_burtoni
ENSCPOG00000012784	R3HDM1	100	94.515	ENSHGLG00000015718	R3HDM1	100	94.107	Heterocephalus_glaber_female
ENSCPOG00000012784	R3HDM1	100	94.515	ENSHGLG00100003184	-	100	93.843	Heterocephalus_glaber_male
ENSCPOG00000012784	R3HDM1	100	69.388	ENSHGLG00100015374	-	100	69.565	Heterocephalus_glaber_male
ENSCPOG00000012784	R3HDM1	64	66.667	ENSHCOG00000005036	-	60	76.190	Hippocampus_comes
ENSCPOG00000012784	R3HDM1	84	57.805	ENSHCOG00000013366	r3hdm1	88	58.500	Hippocampus_comes
ENSCPOG00000012784	R3HDM1	93	60.310	ENSIPUG00000013629	r3hdm1	95	65.109	Ictalurus_punctatus
ENSCPOG00000012784	R3HDM1	99	65.424	ENSIPUG00000001676	R3HDM1	99	62.619	Ictalurus_punctatus
ENSCPOG00000012784	R3HDM1	100	93.882	ENSSTOG00000007572	R3HDM1	99	93.911	Ictidomys_tridecemlineatus
ENSCPOG00000012784	R3HDM1	100	90.244	ENSJJAG00000018208	-	100	90.244	Jaculus_jaculus
ENSCPOG00000012784	R3HDM1	60	73.913	ENSKMAG00000013373	-	89	74.561	Kryptolebias_marmoratus
ENSCPOG00000012784	R3HDM1	100	59.567	ENSLBEG00000027981	-	94	58.676	Labrus_bergylta
ENSCPOG00000012784	R3HDM1	100	70.779	ENSLACG00000005334	R3HDM1	100	71.855	Latimeria_chalumnae
ENSCPOG00000012784	R3HDM1	99	68.421	ENSLOCG00000001641	r3hdm1	100	64.458	Lepisosteus_oculatus
ENSCPOG00000012784	R3HDM1	100	92.004	ENSLAFG00000009065	R3HDM1	100	92.004	Loxodonta_africana
ENSCPOG00000012784	R3HDM1	100	89.631	ENSMFAG00000030331	R3HDM1	100	93.103	Macaca_fascicularis
ENSCPOG00000012784	R3HDM1	100	89.543	ENSMMUG00000009844	R3HDM1	100	89.455	Macaca_mulatta
ENSCPOG00000012784	R3HDM1	100	89.455	ENSMNEG00000027793	R3HDM1	100	93.103	Macaca_nemestrina
ENSCPOG00000012784	R3HDM1	100	89.543	ENSMLEG00000043189	R3HDM1	100	89.455	Mandrillus_leucophaeus
ENSCPOG00000012784	R3HDM1	100	61.092	ENSMAMG00000004532	r3hdm1	99	47.349	Mastacembelus_armatus
ENSCPOG00000012784	R3HDM1	100	59.532	ENSMZEG00005003157	r3hdm1	99	47.588	Maylandia_zebra
ENSCPOG00000012784	R3HDM1	100	74.431	ENSMGAG00000012461	R3HDM1	100	74.606	Meleagris_gallopavo
ENSCPOG00000012784	R3HDM1	100	91.638	ENSMAUG00000010315	R3hdm1	100	91.638	Mesocricetus_auratus
ENSCPOG00000012784	R3HDM1	100	94.093	ENSMICG00000005900	-	100	88.860	Microcebus_murinus
ENSCPOG00000012784	R3HDM1	100	81.185	ENSMICG00000042655	-	100	82.759	Microcebus_murinus
ENSCPOG00000012784	R3HDM1	100	91.561	ENSMOCG00000019833	-	100	91.289	Microtus_ochrogaster
ENSCPOG00000012784	R3HDM1	100	80.064	ENSMODG00000000923	R3HDM1	97	78.748	Monodelphis_domestica
ENSCPOG00000012784	R3HDM1	100	61.905	ENSMALG00000009000	r3hdm1	100	45.721	Monopterus_albus
ENSCPOG00000012784	R3HDM1	100	91.561	MGP_CAROLIEiJ_G0014543	R3hdm1	100	91.289	Mus_caroli
ENSCPOG00000012784	R3HDM1	100	91.561	ENSMUSG00000056211	R3hdm1	100	91.289	Mus_musculus
ENSCPOG00000012784	R3HDM1	100	91.350	MGP_PahariEiJ_G0027779	R3hdm1	100	90.941	Mus_pahari
ENSCPOG00000012784	R3HDM1	100	91.772	MGP_SPRETEiJ_G0015350	R3hdm1	100	91.289	Mus_spretus
ENSCPOG00000012784	R3HDM1	100	89.807	ENSMPUG00000002412	R3HDM1	100	89.895	Mustela_putorius_furo
ENSCPOG00000012784	R3HDM1	100	88.586	ENSMLUG00000013824	R3HDM1	100	88.411	Myotis_lucifugus
ENSCPOG00000012784	R3HDM1	100	91.289	ENSNGAG00000001313	-	100	91.289	Nannospalax_galili
ENSCPOG00000012784	R3HDM1	100	94.093	ENSNLEG00000008622	R3HDM1	100	89.104	Nomascus_leucogenys
ENSCPOG00000012784	R3HDM1	93	73.288	ENSMEUG00000011784	R3HDM1	100	68.473	Notamacropus_eugenii
ENSCPOG00000012784	R3HDM1	100	95.122	ENSODEG00000008607	R3HDM1	100	95.122	Octodon_degus
ENSCPOG00000012784	R3HDM1	80	67.647	ENSONIG00000012017	r3hdm1	98	46.326	Oreochromis_niloticus
ENSCPOG00000012784	R3HDM1	100	82.060	ENSOANG00000007987	R3HDM1	100	77.535	Ornithorhynchus_anatinus
ENSCPOG00000012784	R3HDM1	95	93.348	ENSOCUG00000017366	R3HDM1	98	88.322	Oryctolagus_cuniculus
ENSCPOG00000012784	R3HDM1	100	61.433	ENSORLG00000004297	r3hdm1	99	45.779	Oryzias_latipes
ENSCPOG00000012784	R3HDM1	100	62.116	ENSORLG00020019252	-	93	58.134	Oryzias_latipes_hni
ENSCPOG00000012784	R3HDM1	100	61.433	ENSORLG00015017355	r3hdm1	99	45.626	Oryzias_latipes_hsok
ENSCPOG00000012784	R3HDM1	100	61.667	ENSOMEG00000003882	-	94	56.214	Oryzias_melastigma
ENSCPOG00000012784	R3HDM1	100	88.840	ENSOGAG00000003136	R3HDM1	100	89.367	Otolemur_garnettii
ENSCPOG00000012784	R3HDM1	100	89.279	ENSOARG00000010788	R3HDM1	100	89.279	Ovis_aries
ENSCPOG00000012784	R3HDM1	100	94.304	ENSPPAG00000027858	R3HDM1	100	89.543	Pan_paniscus
ENSCPOG00000012784	R3HDM1	100	93.882	ENSPPRG00000002626	R3HDM1	100	89.279	Panthera_pardus
ENSCPOG00000012784	R3HDM1	100	94.093	ENSPTIG00000016581	R3HDM1	100	89.279	Panthera_tigris_altaica
ENSCPOG00000012784	R3HDM1	100	94.304	ENSPTRG00000012494	R3HDM1	100	89.543	Pan_troglodytes
ENSCPOG00000012784	R3HDM1	100	89.455	ENSPANG00000026448	R3HDM1	100	89.367	Papio_anubis
ENSCPOG00000012784	R3HDM1	97	62.676	ENSPKIG00000004328	r3hdm1	91	72.381	Paramormyrops_kingsleyae
ENSCPOG00000012784	R3HDM1	100	64.605	ENSPKIG00000011224	R3HDM1	90	62.287	Paramormyrops_kingsleyae
ENSCPOG00000012784	R3HDM1	100	76.412	ENSPSIG00000012915	R3HDM1	100	74.233	Pelodiscus_sinensis
ENSCPOG00000012784	R3HDM1	90	54.801	ENSPMGG00000011264	-	91	52.860	Periophthalmus_magnuspinnatus
ENSCPOG00000012784	R3HDM1	100	91.561	ENSPEMG00000015187	R3hdm1	100	91.289	Peromyscus_maniculatus_bairdii
ENSCPOG00000012784	R3HDM1	83	59.352	ENSPMAG00000003369	-	98	42.235	Petromyzon_marinus
ENSCPOG00000012784	R3HDM1	100	87.153	ENSPCIG00000002491	R3HDM1	100	87.715	Phascolarctos_cinereus
ENSCPOG00000012784	R3HDM1	100	59.866	ENSPFOG00000015036	r3hdm1	99	47.081	Poecilia_formosa
ENSCPOG00000012784	R3HDM1	91	59.508	ENSPLAG00000018042	r3hdm1	95	46.598	Poecilia_latipinna
ENSCPOG00000012784	R3HDM1	91	59.508	ENSPMEG00000023947	r3hdm1	95	46.304	Poecilia_mexicana
ENSCPOG00000012784	R3HDM1	100	60.751	ENSPREG00000007902	r3hdm1	93	58.482	Poecilia_reticulata
ENSCPOG00000012784	R3HDM1	100	88.060	ENSPPYG00000012815	R3HDM1	100	87.972	Pongo_abelii
ENSCPOG00000012784	R3HDM1	100	83.389	ENSPCAG00000006208	R3HDM1	100	76.538	Procavia_capensis
ENSCPOG00000012784	R3HDM1	100	91.379	ENSPCOG00000012698	R3HDM1	100	88.319	Propithecus_coquereli
ENSCPOG00000012784	R3HDM1	95	87.140	ENSPVAG00000006098	R3HDM1	100	81.107	Pteropus_vampyrus
ENSCPOG00000012784	R3HDM1	100	59.868	ENSPNYG00000008701	-	97	58.629	Pundamilia_nyererei
ENSCPOG00000012784	R3HDM1	88	69.188	ENSPNAG00000013952	r3hdm1	93	69.101	Pygocentrus_nattereri
ENSCPOG00000012784	R3HDM1	76	72.756	ENSPNAG00000005436	R3HDM1	99	72.669	Pygocentrus_nattereri
ENSCPOG00000012784	R3HDM1	86	48.039	ENSPNAG00000004162	arpp21	79	57.540	Pygocentrus_nattereri
ENSCPOG00000012784	R3HDM1	100	88.840	ENSRNOG00000004099	R3hdm1	100	88.840	Rattus_norvegicus
ENSCPOG00000012784	R3HDM1	100	90.000	ENSRBIG00000033317	R3HDM1	99	98.876	Rhinopithecus_bieti
ENSCPOG00000012784	R3HDM1	94	94.183	ENSRROG00000034534	R3HDM1	100	88.664	Rhinopithecus_roxellana
ENSCPOG00000012784	R3HDM1	100	88.752	ENSSBOG00000020389	R3HDM1	100	88.664	Saimiri_boliviensis_boliviensis
ENSCPOG00000012784	R3HDM1	100	84.053	ENSSHAG00000016999	R3HDM1	100	80.246	Sarcophilus_harrisii
ENSCPOG00000012784	R3HDM1	100	63.518	ENSSFOG00015019851	-	99	55.213	Scleropages_formosus
ENSCPOG00000012784	R3HDM1	100	68.836	ENSSFOG00015014134	r3hdm1	100	69.175	Scleropages_formosus
ENSCPOG00000012784	R3HDM1	100	59.310	ENSSMAG00000001669	r3hdm1	99	43.289	Scophthalmus_maximus
ENSCPOG00000012784	R3HDM1	100	62.245	ENSSDUG00000010749	r3hdm1	99	46.389	Seriola_dumerili
ENSCPOG00000012784	R3HDM1	100	60.667	ENSSLDG00000004499	r3hdm1	99	45.823	Seriola_lalandi_dorsalis
ENSCPOG00000012784	R3HDM1	100	74.086	ENSSARG00000000352	-	69	78.738	Sorex_araneus
ENSCPOG00000012784	R3HDM1	100	75.919	ENSSPUG00000004167	R3HDM1	100	76.007	Sphenodon_punctatus
ENSCPOG00000012784	R3HDM1	100	62.457	ENSSPAG00000004648	r3hdm1	99	47.801	Stegastes_partitus
ENSCPOG00000012784	R3HDM1	100	94.515	ENSSSCG00000015692	R3HDM1	100	92.625	Sus_scrofa
ENSCPOG00000012784	R3HDM1	95	80.574	ENSTGUG00000011750	R3HDM1	100	70.192	Taeniopygia_guttata
ENSCPOG00000012784	R3HDM1	84	59.564	ENSTRUG00000011654	r3hdm1	93	46.082	Takifugu_rubripes
ENSCPOG00000012784	R3HDM1	80	66.946	ENSTNIG00000010362	r3hdm1	95	44.139	Tetraodon_nigroviridis
ENSCPOG00000012784	R3HDM1	100	82.601	ENSTTRG00000003935	R3HDM1	100	82.689	Tursiops_truncatus
ENSCPOG00000012784	R3HDM1	95	93.570	ENSUAMG00000024806	R3HDM1	99	91.513	Ursus_americanus
ENSCPOG00000012784	R3HDM1	93	95.023	ENSUMAG00000005552	R3HDM1	100	85.413	Ursus_maritimus
ENSCPOG00000012784	R3HDM1	88	92.647	ENSVPAG00000007333	R3HDM1	93	85.965	Vicugna_pacos
ENSCPOG00000012784	R3HDM1	100	92.970	ENSVVUG00000006457	R3HDM1	100	92.970	Vulpes_vulpes
ENSCPOG00000012784	R3HDM1	88	80.760	ENSXETG00000019330	r3hdm1	100	63.046	Xenopus_tropicalis
ENSCPOG00000012784	R3HDM1	85	60.382	ENSXCOG00000017448	r3hdm1	94	46.902	Xiphophorus_couchianus
ENSCPOG00000012784	R3HDM1	100	61.204	ENSXMAG00000007885	r3hdm1	99	46.211	Xiphophorus_maculatus