EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCPOG00000012860 (Gene tree)
Gene ID: 100723523
Gene Symbol: LSM12
Alias: FLJ30656
Full Name: LSM12 homolog
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Plus strand
Length: 17456 bases
Position: chrDS562922.1:9516470-9533925
Accession: 100723523
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000011575	AD	PF09793.9	1.8e-24	1	1
ENSCPOP00000028954	AD	PF09793.9	2.4e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000047689	LSM12-202	414	-	ENSCPOP00000028954	137 (aa)	-	A0A286XTZ6
ENSCPOT00000012985	LSM12-201	588	XM_003465746	ENSCPOP00000011575	195 (aa)	XP_003465794	H0VME7

Gene Model

Click here to download ENSCPOG00000012860's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000012860's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000012860	LSM12	100	98.165	ENSG00000161654	LSM12	100	97.949	Homo_sapiens
ENSCPOG00000012860	LSM12	100	85.204	ENSAPOG00000007907	lsm12b	100	85.204	Acanthochromis_polyacanthus
ENSCPOG00000012860	LSM12	100	98.165	ENSAMEG00000018321	LSM12	100	95.960	Ailuropoda_melanoleuca
ENSCPOG00000012860	LSM12	100	83.163	ENSACIG00000008538	lsm12b	100	83.163	Amphilophus_citrinellus
ENSCPOG00000012860	LSM12	100	84.694	ENSAOCG00000021847	lsm12b	88	84.694	Amphiprion_ocellaris
ENSCPOG00000012860	LSM12	100	84.694	ENSAPEG00000002252	lsm12b	100	84.694	Amphiprion_percula
ENSCPOG00000012860	LSM12	100	84.694	ENSATEG00000005705	lsm12b	100	84.694	Anabas_testudineus
ENSCPOG00000012860	LSM12	99	92.228	ENSACAG00000004618	LSM12	99	92.228	Anolis_carolinensis
ENSCPOG00000012860	LSM12	100	98.165	ENSANAG00000029011	LSM12	100	98.165	Aotus_nancymaae
ENSCPOG00000012860	LSM12	100	83.673	ENSACLG00000026332	lsm12b	100	83.673	Astatotilapia_calliptera
ENSCPOG00000012860	LSM12	100	83.673	ENSAMXG00000032952	lsm12b	100	83.673	Astyanax_mexicanus
ENSCPOG00000012860	LSM12	100	81.081	ENSAMXG00000036117	lsm12a	91	78.061	Astyanax_mexicanus
ENSCPOG00000012860	LSM12	100	98.165	ENSBTAG00000016252	LSM12	100	97.949	Bos_taurus
ENSCPOG00000012860	LSM12	100	98.165	ENSCJAG00000048480	LSM12	100	98.165	Callithrix_jacchus
ENSCPOG00000012860	LSM12	100	97.949	ENSCAFG00000014379	LSM12	92	97.949	Canis_familiaris
ENSCPOG00000012860	LSM12	100	98.165	ENSCAFG00020012173	LSM12	100	97.949	Canis_lupus_dingo
ENSCPOG00000012860	LSM12	100	98.165	ENSCHIG00000018175	LSM12	100	97.949	Capra_hircus
ENSCPOG00000012860	LSM12	100	98.165	ENSTSYG00000036361	LSM12	100	97.949	Carlito_syrichta
ENSCPOG00000012860	LSM12	80	100.000	ENSCAPG00000009647	LSM12	89	95.679	Cavia_aperea
ENSCPOG00000012860	LSM12	100	98.165	ENSCCAG00000032905	LSM12	100	98.165	Cebus_capucinus
ENSCPOG00000012860	LSM12	100	98.165	ENSCATG00000030577	-	100	98.165	Cercocebus_atys
ENSCPOG00000012860	LSM12	100	100.000	ENSCLAG00000015759	LSM12	100	100.000	Chinchilla_lanigera
ENSCPOG00000012860	LSM12	100	97.436	ENSCSAG00000003486	LSM12	100	97.436	Chlorocebus_sabaeus
ENSCPOG00000012860	LSM12	80	97.248	ENSCHOG00000001198	LSM12	100	97.248	Choloepus_hoffmanni
ENSCPOG00000012860	LSM12	99	92.228	ENSCPBG00000027105	LSM12	99	92.228	Chrysemys_picta_bellii
ENSCPOG00000012860	LSM12	100	98.165	ENSCANG00000043328	LSM12	100	98.165	Colobus_angolensis_palliatus
ENSCPOG00000012860	LSM12	100	98.165	ENSCGRG00001002094	Lsm12	100	98.165	Cricetulus_griseus_chok1gshd
ENSCPOG00000012860	LSM12	80	98.165	ENSCGRG00000004316	Lsm12	87	98.701	Cricetulus_griseus_crigri
ENSCPOG00000012860	LSM12	100	84.184	ENSCSEG00000008434	lsm12b	100	84.184	Cynoglossus_semilaevis
ENSCPOG00000012860	LSM12	100	84.545	ENSCVAG00000008755	lsm12b	100	83.673	Cyprinodon_variegatus
ENSCPOG00000012860	LSM12	100	76.020	ENSDARG00000028848	lsm12a	100	76.020	Danio_rerio
ENSCPOG00000012860	LSM12	100	84.184	ENSDARG00000109510	lsm12b	100	84.184	Danio_rerio
ENSCPOG00000012860	LSM12	100	97.436	ENSDNOG00000002418	LSM12	91	97.436	Dasypus_novemcinctus
ENSCPOG00000012860	LSM12	100	98.165	ENSDORG00000016381	Lsm12	100	98.165	Dipodomys_ordii
ENSCPOG00000012860	LSM12	74	31.013	FBgn0036057	CG14164	83	31.013	Drosophila_melanogaster
ENSCPOG00000012860	LSM12	83	32.530	FBgn0030364	Lsm12	76	32.335	Drosophila_melanogaster
ENSCPOG00000012860	LSM12	90	85.714	ENSETEG00000011012	-	100	85.714	Echinops_telfairi
ENSCPOG00000012860	LSM12	100	98.165	ENSETEG00000008374	LSM12	100	97.436	Echinops_telfairi
ENSCPOG00000012860	LSM12	84	62.805	ENSEBUG00000016299	lsm12a	92	62.805	Eptatretus_burgeri
ENSCPOG00000012860	LSM12	100	98.165	ENSEASG00005010155	LSM12	100	97.949	Equus_asinus_asinus
ENSCPOG00000012860	LSM12	100	98.165	ENSECAG00000009071	LSM12	100	98.165	Equus_caballus
ENSCPOG00000012860	LSM12	81	94.595	ENSEEUG00000002419	-	100	97.386	Erinaceus_europaeus
ENSCPOG00000012860	LSM12	100	83.163	ENSELUG00000015538	lsm12b	100	78.571	Esox_lucius
ENSCPOG00000012860	LSM12	100	81.122	ENSELUG00000000256	-	100	81.122	Esox_lucius
ENSCPOG00000012860	LSM12	100	98.165	ENSFCAG00000037021	LSM12	100	97.949	Felis_catus
ENSCPOG00000012860	LSM12	81	95.495	ENSFDAG00000008954	LSM12	87	97.973	Fukomys_damarensis
ENSCPOG00000012860	LSM12	100	83.636	ENSFHEG00000019913	lsm12b	100	82.653	Fundulus_heteroclitus
ENSCPOG00000012860	LSM12	81	83.784	ENSGMOG00000015449	lsm12b	100	83.544	Gadus_morhua
ENSCPOG00000012860	LSM12	80	92.661	ENSGALG00000039803	LSM12	100	94.118	Gallus_gallus
ENSCPOG00000012860	LSM12	100	84.545	ENSGAFG00000011829	lsm12b	100	83.163	Gambusia_affinis
ENSCPOG00000012860	LSM12	81	84.177	ENSGACG00000003428	lsm12b	100	84.177	Gasterosteus_aculeatus
ENSCPOG00000012860	LSM12	99	93.264	ENSGAGG00000021965	LSM12	99	93.264	Gopherus_agassizii
ENSCPOG00000012860	LSM12	100	98.165	ENSGGOG00000010589	-	100	98.165	Gorilla_gorilla
ENSCPOG00000012860	LSM12	85	85.030	ENSHBUG00000007667	lsm12b	74	85.030	Haplochromis_burtoni
ENSCPOG00000012860	LSM12	100	98.165	ENSHGLG00000011411	LSM12	100	98.165	Heterocephalus_glaber_female
ENSCPOG00000012860	LSM12	80	98.165	ENSHGLG00100000241	LSM12	96	86.188	Heterocephalus_glaber_male
ENSCPOG00000012860	LSM12	100	83.163	ENSHCOG00000002094	lsm12b	100	83.163	Hippocampus_comes
ENSCPOG00000012860	LSM12	99	77.778	ENSIPUG00000008936	lsm12a	99	75.258	Ictalurus_punctatus
ENSCPOG00000012860	LSM12	100	84.184	ENSIPUG00000014800	lsm12	100	84.184	Ictalurus_punctatus
ENSCPOG00000012860	LSM12	100	98.165	ENSSTOG00000007403	LSM12	100	98.165	Ictidomys_tridecemlineatus
ENSCPOG00000012860	LSM12	81	83.648	ENSJJAG00000014652	-	95	83.648	Jaculus_jaculus
ENSCPOG00000012860	LSM12	97	85.789	ENSJJAG00000011793	-	100	85.789	Jaculus_jaculus
ENSCPOG00000012860	LSM12	100	97.080	ENSJJAG00000004364	-	100	97.080	Jaculus_jaculus
ENSCPOG00000012860	LSM12	89	83.523	ENSKMAG00000007704	lsm12b	59	83.523	Kryptolebias_marmoratus
ENSCPOG00000012860	LSM12	100	84.694	ENSLBEG00000027999	lsm12b	100	84.694	Labrus_bergylta
ENSCPOG00000012860	LSM12	99	91.743	ENSLACG00000015981	LSM12	99	89.637	Latimeria_chalumnae
ENSCPOG00000012860	LSM12	100	85.586	ENSLOCG00000013079	lsm12b	99	82.653	Lepisosteus_oculatus
ENSCPOG00000012860	LSM12	100	98.165	ENSLAFG00000005202	LSM12	100	97.949	Loxodonta_africana
ENSCPOG00000012860	LSM12	100	98.165	ENSMFAG00000031376	LSM12	100	98.165	Macaca_fascicularis
ENSCPOG00000012860	LSM12	100	65.693	ENSMMUG00000042106	-	100	83.908	Macaca_mulatta
ENSCPOG00000012860	LSM12	100	64.964	ENSMMUG00000038408	-	100	83.908	Macaca_mulatta
ENSCPOG00000012860	LSM12	100	98.165	ENSMMUG00000006804	LSM12	100	98.165	Macaca_mulatta
ENSCPOG00000012860	LSM12	100	98.165	ENSMNEG00000030594	-	100	98.165	Macaca_nemestrina
ENSCPOG00000012860	LSM12	100	98.165	ENSMLEG00000039934	LSM12	100	98.165	Mandrillus_leucophaeus
ENSCPOG00000012860	LSM12	100	84.184	ENSMAMG00000004279	lsm12b	100	84.184	Mastacembelus_armatus
ENSCPOG00000012860	LSM12	100	83.673	ENSMZEG00005005754	lsm12b	100	83.673	Maylandia_zebra
ENSCPOG00000012860	LSM12	100	97.436	ENSMICG00000037219	LSM12	100	97.436	Microcebus_murinus
ENSCPOG00000012860	LSM12	100	82.051	ENSMOCG00000017015	-	86	82.051	Microtus_ochrogaster
ENSCPOG00000012860	LSM12	100	98.165	ENSMOCG00000019878	-	100	98.165	Microtus_ochrogaster
ENSCPOG00000012860	LSM12	100	84.184	ENSMMOG00000020848	lsm12b	100	84.184	Mola_mola
ENSCPOG00000012860	LSM12	100	84.184	ENSMALG00000007578	lsm12b	100	84.184	Monopterus_albus
ENSCPOG00000012860	LSM12	100	97.436	MGP_CAROLIEiJ_G0017241	Lsm12	100	97.436	Mus_caroli
ENSCPOG00000012860	LSM12	100	98.165	ENSMUSG00000020922	Lsm12	100	98.165	Mus_musculus
ENSCPOG00000012860	LSM12	100	97.810	MGP_PahariEiJ_G0018371	Lsm12	100	98.165	Mus_pahari
ENSCPOG00000012860	LSM12	100	98.148	MGP_SPRETEiJ_G0018084	Lsm12	100	97.436	Mus_spretus
ENSCPOG00000012860	LSM12	100	97.436	ENSMLUG00000006391	LSM12	100	97.436	Myotis_lucifugus
ENSCPOG00000012860	LSM12	100	98.165	ENSNGAG00000001870	Lsm12	100	98.165	Nannospalax_galili
ENSCPOG00000012860	LSM12	100	66.337	ENSNGAG00000015429	-	100	66.337	Nannospalax_galili
ENSCPOG00000012860	LSM12	100	83.673	ENSNBRG00000006266	lsm12b	100	83.673	Neolamprologus_brichardi
ENSCPOG00000012860	LSM12	100	98.165	ENSNLEG00000005580	-	100	98.165	Nomascus_leucogenys
ENSCPOG00000012860	LSM12	85	96.970	ENSMEUG00000007501	-	100	96.970	Notamacropus_eugenii
ENSCPOG00000012860	LSM12	100	98.165	ENSOPRG00000008552	LSM12	100	97.949	Ochotona_princeps
ENSCPOG00000012860	LSM12	100	87.692	ENSODEG00000007886	-	74	87.692	Octodon_degus
ENSCPOG00000012860	LSM12	100	98.165	ENSODEG00000017998	-	100	97.436	Octodon_degus
ENSCPOG00000012860	LSM12	100	83.673	ENSONIG00000007933	lsm12b	100	83.673	Oreochromis_niloticus
ENSCPOG00000012860	LSM12	54	95.946	ENSOANG00000031724	-	100	90.123	Ornithorhynchus_anatinus
ENSCPOG00000012860	LSM12	100	98.165	ENSOCUG00000008566	-	100	95.960	Oryctolagus_cuniculus
ENSCPOG00000012860	LSM12	99	91.237	ENSOCUG00000021254	-	100	91.237	Oryctolagus_cuniculus
ENSCPOG00000012860	LSM12	99	93.519	ENSOCUG00000027889	-	100	91.237	Oryctolagus_cuniculus
ENSCPOG00000012860	LSM12	99	91.667	ENSOCUG00000024823	-	100	90.206	Oryctolagus_cuniculus
ENSCPOG00000012860	LSM12	100	84.694	ENSORLG00000011310	lsm12b	100	84.694	Oryzias_latipes
ENSCPOG00000012860	LSM12	100	84.694	ENSORLG00020002060	lsm12b	92	84.694	Oryzias_latipes_hni
ENSCPOG00000012860	LSM12	100	84.694	ENSORLG00015001647	lsm12b	92	84.694	Oryzias_latipes_hsok
ENSCPOG00000012860	LSM12	100	84.694	ENSOMEG00000006184	lsm12b	92	84.694	Oryzias_melastigma
ENSCPOG00000012860	LSM12	100	97.436	ENSOGAG00000010489	LSM12	100	97.436	Otolemur_garnettii
ENSCPOG00000012860	LSM12	100	98.165	ENSOARG00000006589	LSM12	100	94.527	Ovis_aries
ENSCPOG00000012860	LSM12	100	90.141	ENSPPAG00000034974	-	92	98.165	Pan_paniscus
ENSCPOG00000012860	LSM12	100	98.165	ENSPPRG00000023420	LSM12	100	97.949	Panthera_pardus
ENSCPOG00000012860	LSM12	81	96.396	ENSPTIG00000012704	-	82	98.693	Panthera_tigris_altaica
ENSCPOG00000012860	LSM12	100	96.350	ENSPTIG00000014850	-	100	96.350	Panthera_tigris_altaica
ENSCPOG00000012860	LSM12	100	98.165	ENSPTRG00000009261	LSM12	100	98.165	Pan_troglodytes
ENSCPOG00000012860	LSM12	100	98.165	ENSPANG00000021315	-	100	98.165	Papio_anubis
ENSCPOG00000012860	LSM12	99	76.804	ENSPKIG00000017932	-	99	76.804	Paramormyrops_kingsleyae
ENSCPOG00000012860	LSM12	100	85.586	ENSPKIG00000021058	lsm12b	100	85.204	Paramormyrops_kingsleyae
ENSCPOG00000012860	LSM12	100	84.184	ENSPMGG00000021344	lsm12b	100	84.184	Periophthalmus_magnuspinnatus
ENSCPOG00000012860	LSM12	100	98.165	ENSPEMG00000012199	Lsm12	100	98.165	Peromyscus_maniculatus_bairdii
ENSCPOG00000012860	LSM12	88	65.116	ENSPMAG00000005461	lsm12a	99	65.116	Petromyzon_marinus
ENSCPOG00000012860	LSM12	100	96.330	ENSPCIG00000020244	LSM12	100	95.897	Phascolarctos_cinereus
ENSCPOG00000012860	LSM12	100	83.784	ENSPFOG00000015930	lsm12b	100	82.143	Poecilia_formosa
ENSCPOG00000012860	LSM12	100	83.784	ENSPLAG00000021089	lsm12b	100	82.143	Poecilia_latipinna
ENSCPOG00000012860	LSM12	100	83.784	ENSPMEG00000012961	lsm12b	100	82.143	Poecilia_mexicana
ENSCPOG00000012860	LSM12	88	84.211	ENSPREG00000010236	lsm12b	95	84.211	Poecilia_reticulata
ENSCPOG00000012860	LSM12	100	98.165	ENSPPYG00000008344	LSM12	100	97.949	Pongo_abelii
ENSCPOG00000012860	LSM12	82	98.113	ENSPCAG00000008790	LSM12	100	98.113	Procavia_capensis
ENSCPOG00000012860	LSM12	100	98.165	ENSPCOG00000027951	LSM12	100	98.165	Propithecus_coquereli
ENSCPOG00000012860	LSM12	100	97.436	ENSPVAG00000013706	LSM12	100	97.436	Pteropus_vampyrus
ENSCPOG00000012860	LSM12	100	83.673	ENSPNYG00000003386	lsm12b	100	83.673	Pundamilia_nyererei
ENSCPOG00000012860	LSM12	100	83.636	ENSPNAG00000004186	lsm12b	100	82.143	Pygocentrus_nattereri
ENSCPOG00000012860	LSM12	100	81.982	ENSPNAG00000018435	lsm12a	100	76.531	Pygocentrus_nattereri
ENSCPOG00000012860	LSM12	100	98.165	ENSRNOG00000020894	Lsm12	100	97.949	Rattus_norvegicus
ENSCPOG00000012860	LSM12	100	98.165	ENSRBIG00000027910	LSM12	100	98.165	Rhinopithecus_bieti
ENSCPOG00000012860	LSM12	100	81.022	ENSRROG00000000537	-	100	81.022	Rhinopithecus_roxellana
ENSCPOG00000012860	LSM12	100	98.165	ENSRROG00000045530	-	100	98.165	Rhinopithecus_roxellana
ENSCPOG00000012860	LSM12	77	33.898	YHR121W	-	61	33.898	Saccharomyces_cerevisiae
ENSCPOG00000012860	LSM12	100	98.165	ENSSBOG00000025310	LSM12	100	98.165	Saimiri_boliviensis_boliviensis
ENSCPOG00000012860	LSM12	81	94.595	ENSSHAG00000014914	LSM12	100	94.304	Sarcophilus_harrisii
ENSCPOG00000012860	LSM12	100	83.163	ENSSFOG00015020392	lsm12a	100	83.163	Scleropages_formosus
ENSCPOG00000012860	LSM12	100	85.204	ENSSFOG00015009612	lsm12	100	85.204	Scleropages_formosus
ENSCPOG00000012860	LSM12	100	84.184	ENSSMAG00000008089	lsm12b	100	84.184	Scophthalmus_maximus
ENSCPOG00000012860	LSM12	100	85.204	ENSSDUG00000012711	lsm12b	100	85.204	Seriola_dumerili
ENSCPOG00000012860	LSM12	100	85.204	ENSSLDG00000007404	lsm12b	100	85.204	Seriola_lalandi_dorsalis
ENSCPOG00000012860	LSM12	81	96.396	ENSSARG00000005537	LSM12	100	98.039	Sorex_araneus
ENSCPOG00000012860	LSM12	100	93.578	ENSSPUG00000011984	LSM12	99	93.782	Sphenodon_punctatus
ENSCPOG00000012860	LSM12	100	84.694	ENSSPAG00000017058	lsm12b	100	84.694	Stegastes_partitus
ENSCPOG00000012860	LSM12	100	98.165	ENSSSCG00000032394	LSM12	100	97.949	Sus_scrofa
ENSCPOG00000012860	LSM12	100	83.636	ENSTRUG00000007121	lsm12b	100	83.163	Takifugu_rubripes
ENSCPOG00000012860	LSM12	100	83.673	ENSTNIG00000014436	lsm12b	100	83.673	Tetraodon_nigroviridis
ENSCPOG00000012860	LSM12	100	94.359	ENSTBEG00000012392	-	100	94.359	Tupaia_belangeri
ENSCPOG00000012860	LSM12	100	97.436	ENSTBEG00000012523	-	100	97.436	Tupaia_belangeri
ENSCPOG00000012860	LSM12	100	98.165	ENSTTRG00000010433	LSM12	100	97.949	Tursiops_truncatus
ENSCPOG00000012860	LSM12	100	98.165	ENSUAMG00000006313	LSM12	100	97.949	Ursus_americanus
ENSCPOG00000012860	LSM12	81	96.396	ENSUMAG00000012987	LSM12	90	95.570	Ursus_maritimus
ENSCPOG00000012860	LSM12	100	92.308	ENSVPAG00000011145	LSM12	100	92.308	Vicugna_pacos
ENSCPOG00000012860	LSM12	100	98.165	ENSVVUG00000017581	LSM12	100	97.949	Vulpes_vulpes
ENSCPOG00000012860	LSM12	80	83.486	ENSXETG00000003371	lsm12	77	65.000	Xenopus_tropicalis
ENSCPOG00000012860	LSM12	100	84.545	ENSXCOG00000003994	lsm12b	100	83.163	Xiphophorus_couchianus
ENSCPOG00000012860	LSM12	100	84.545	ENSXMAG00000020950	lsm12b	100	83.163	Xiphophorus_maculatus