EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPOG00000013511 (Gene tree)
Gene ID: 100726474
Gene Symbol: PCBP1
Alias: HNRPE1|HNRPX|hnRNP-E1|hnRNP-X
Full Name: poly(rC) binding protein 1
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Minus strand
Length: 1071 bases
Position: chrDS562892.1:18622556-18623626
Accession: 100726474
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000012166	KH_1	PF00013.29	1.3e-51	1	3
ENSCPOP00000012166	KH_1	PF00013.29	1.3e-51	2	3
ENSCPOP00000012166	KH_1	PF00013.29	1.3e-51	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000013645	PCBP1-201	1071	XM_003469029	ENSCPOP00000012166	356 (aa)	XP_003469077	H0VNW7

Gene Model

Click here to download ENSCPOG00000013511's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000013511's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPOG00000013511	PCBP1	70	40.541	ENSCPOG00000030872	NOVA1	57	40.541
ENSCPOG00000013511	PCBP1	98	52.691	ENSCPOG00000014617	PCBP4	77	52.691
ENSCPOG00000013511	PCBP1	60	31.013	ENSCPOG00000010315	FUBP3	65	31.551
ENSCPOG00000013511	PCBP1	100	81.744	ENSCPOG00000000967	PCBP2	100	81.744
ENSCPOG00000013511	PCBP1	75	34.667	ENSCPOG00000005140	KHSRP	55	34.667
ENSCPOG00000013511	PCBP1	99	66.301	ENSCPOG00000003648	PCBP3	91	66.301

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000013511	PCBP1	100	100.000	ENSG00000169564	PCBP1	100	100.000	Homo_sapiens
ENSCPOG00000013511	PCBP1	100	97.191	ENSAMEG00000016094	PCBP1	100	97.191	Ailuropoda_melanoleuca
ENSCPOG00000013511	PCBP1	97	96.243	ENSANAG00000026989	-	99	96.243	Aotus_nancymaae
ENSCPOG00000013511	PCBP1	100	88.202	ENSANAG00000026077	-	100	88.202	Aotus_nancymaae
ENSCPOG00000013511	PCBP1	89	87.658	ENSANAG00000027108	-	100	87.658	Aotus_nancymaae
ENSCPOG00000013511	PCBP1	79	95.053	ENSANAG00000031745	-	100	95.053	Aotus_nancymaae
ENSCPOG00000013511	PCBP1	79	91.873	ENSANAG00000022494	-	100	91.873	Aotus_nancymaae
ENSCPOG00000013511	PCBP1	79	95.053	ENSANAG00000019364	-	100	95.053	Aotus_nancymaae
ENSCPOG00000013511	PCBP1	100	89.045	ENSANAG00000023938	-	100	89.045	Aotus_nancymaae
ENSCPOG00000013511	PCBP1	100	85.674	ENSANAG00000033377	-	100	85.674	Aotus_nancymaae
ENSCPOG00000013511	PCBP1	91	100.000	ENSBTAG00000008985	PCBP1	99	100.000	Bos_taurus
ENSCPOG00000013511	PCBP1	100	94.382	ENSCJAG00000038388	-	95	94.382	Callithrix_jacchus
ENSCPOG00000013511	PCBP1	100	99.719	ENSCAFG00000003326	PCBP1	100	99.719	Canis_familiaris
ENSCPOG00000013511	PCBP1	100	100.000	ENSCHIG00000007923	PCBP1	100	100.000	Capra_hircus
ENSCPOG00000013511	PCBP1	100	99.438	ENSTSYG00000027848	PCBP1	100	99.438	Carlito_syrichta
ENSCPOG00000013511	PCBP1	100	91.292	ENSCCAG00000029186	-	98	91.292	Cebus_capucinus
ENSCPOG00000013511	PCBP1	100	100.000	ENSCCAG00000019842	-	100	100.000	Cebus_capucinus
ENSCPOG00000013511	PCBP1	100	100.000	ENSCATG00000015029	PCBP1	100	100.000	Cercocebus_atys
ENSCPOG00000013511	PCBP1	100	99.438	ENSCLAG00000017909	PCBP1	100	99.438	Chinchilla_lanigera
ENSCPOG00000013511	PCBP1	100	100.000	ENSCSAG00000019441	PCBP1	100	100.000	Chlorocebus_sabaeus
ENSCPOG00000013511	PCBP1	72	84.706	ENSCANG00000033810	-	87	84.706	Colobus_angolensis_palliatus
ENSCPOG00000013511	PCBP1	100	100.000	ENSCANG00000018039	-	100	100.000	Colobus_angolensis_palliatus
ENSCPOG00000013511	PCBP1	100	89.888	ENSCANG00000032470	-	94	89.888	Colobus_angolensis_palliatus
ENSCPOG00000013511	PCBP1	100	100.000	ENSCGRG00001015078	Pcbp1	100	100.000	Cricetulus_griseus_chok1gshd
ENSCPOG00000013511	PCBP1	100	100.000	ENSCGRG00000018899	Pcbp1	100	100.000	Cricetulus_griseus_crigri
ENSCPOG00000013511	PCBP1	80	99.298	ENSDNOG00000036372	PCBP1	99	99.298	Dasypus_novemcinctus
ENSCPOG00000013511	PCBP1	100	100.000	ENSDORG00000008216	Pcbp1	100	100.000	Dipodomys_ordii
ENSCPOG00000013511	PCBP1	100	100.000	ENSFCAG00000022238	PCBP1	100	100.000	Felis_catus
ENSCPOG00000013511	PCBP1	100	99.719	ENSFDAG00000019637	PCBP1	100	99.719	Fukomys_damarensis
ENSCPOG00000013511	PCBP1	100	100.000	ENSGGOG00000028130	PCBP1	100	100.000	Gorilla_gorilla
ENSCPOG00000013511	PCBP1	100	99.719	ENSHGLG00000020345	Pcbp1	100	99.719	Heterocephalus_glaber_female
ENSCPOG00000013511	PCBP1	100	97.753	ENSHGLG00000020243	-	100	97.753	Heterocephalus_glaber_female
ENSCPOG00000013511	PCBP1	100	99.438	ENSHGLG00100019620	-	100	99.438	Heterocephalus_glaber_male
ENSCPOG00000013511	PCBP1	100	99.719	ENSHGLG00100019761	Pcbp1	100	99.719	Heterocephalus_glaber_male
ENSCPOG00000013511	PCBP1	100	100.000	ENSSTOG00000026002	PCBP1	100	100.000	Ictidomys_tridecemlineatus
ENSCPOG00000013511	PCBP1	100	100.000	ENSJJAG00000000737	Pcbp1	100	100.000	Jaculus_jaculus
ENSCPOG00000013511	PCBP1	95	88.427	ENSMFAG00000003400	PCBP1	100	88.427	Macaca_fascicularis
ENSCPOG00000013511	PCBP1	100	100.000	ENSMMUG00000038295	PCBP1	100	100.000	Macaca_mulatta
ENSCPOG00000013511	PCBP1	100	100.000	ENSMNEG00000002934	PCBP1	100	100.000	Macaca_nemestrina
ENSCPOG00000013511	PCBP1	100	100.000	ENSMLEG00000027389	PCBP1	100	100.000	Mandrillus_leucophaeus
ENSCPOG00000013511	PCBP1	100	99.719	ENSMAUG00000009843	Pcbp1	100	99.719	Mesocricetus_auratus
ENSCPOG00000013511	PCBP1	100	100.000	ENSMICG00000038221	PCBP1	100	100.000	Microcebus_murinus
ENSCPOG00000013511	PCBP1	100	100.000	ENSMOCG00000008102	Pcbp1	100	100.000	Microtus_ochrogaster
ENSCPOG00000013511	PCBP1	100	100.000	MGP_CAROLIEiJ_G0028598	Pcbp1	100	100.000	Mus_caroli
ENSCPOG00000013511	PCBP1	100	100.000	ENSMUSG00000051695	Pcbp1	100	100.000	Mus_musculus
ENSCPOG00000013511	PCBP1	100	100.000	MGP_PahariEiJ_G0022335	Pcbp1	100	100.000	Mus_pahari
ENSCPOG00000013511	PCBP1	100	100.000	MGP_SPRETEiJ_G0029609	Pcbp1	100	100.000	Mus_spretus
ENSCPOG00000013511	PCBP1	100	97.191	ENSMPUG00000007175	PCBP1	100	97.191	Mustela_putorius_furo
ENSCPOG00000013511	PCBP1	100	100.000	ENSMLUG00000014173	PCBP1	100	100.000	Myotis_lucifugus
ENSCPOG00000013511	PCBP1	100	100.000	ENSNGAG00000014909	-	100	100.000	Nannospalax_galili
ENSCPOG00000013511	PCBP1	100	100.000	ENSNGAG00000011957	-	100	100.000	Nannospalax_galili
ENSCPOG00000013511	PCBP1	100	100.000	ENSNLEG00000018722	PCBP1	100	100.000	Nomascus_leucogenys
ENSCPOG00000013511	PCBP1	100	83.427	ENSODEG00000000263	PCBP1	100	83.427	Octodon_degus
ENSCPOG00000013511	PCBP1	100	100.000	ENSOCUG00000003634	PCBP1	100	100.000	Oryctolagus_cuniculus
ENSCPOG00000013511	PCBP1	100	97.191	ENSOGAG00000028946	PCBP1	100	97.191	Otolemur_garnettii
ENSCPOG00000013511	PCBP1	100	100.000	ENSOARG00000019516	PCBP1	100	100.000	Ovis_aries
ENSCPOG00000013511	PCBP1	100	98.034	ENSPPAG00000036116	PCBP1	99	98.599	Pan_paniscus
ENSCPOG00000013511	PCBP1	100	100.000	ENSPPRG00000020533	PCBP1	100	100.000	Panthera_pardus
ENSCPOG00000013511	PCBP1	100	100.000	ENSPTIG00000007318	PCBP1	100	100.000	Panthera_tigris_altaica
ENSCPOG00000013511	PCBP1	100	100.000	ENSPTRG00000012025	PCBP1	100	100.000	Pan_troglodytes
ENSCPOG00000013511	PCBP1	100	100.000	ENSPANG00000011314	PCBP1	100	100.000	Papio_anubis
ENSCPOG00000013511	PCBP1	100	100.000	ENSPPYG00000012328	PCBP1	100	100.000	Pongo_abelii
ENSCPOG00000013511	PCBP1	100	100.000	ENSPCOG00000026934	PCBP1	100	100.000	Propithecus_coquereli
ENSCPOG00000013511	PCBP1	93	98.795	ENSRROG00000012514	-	100	98.795	Rhinopithecus_roxellana
ENSCPOG00000013511	PCBP1	100	99.157	ENSRROG00000009684	-	95	99.157	Rhinopithecus_roxellana
ENSCPOG00000013511	PCBP1	100	83.427	ENSSBOG00000035309	-	94	83.427	Saimiri_boliviensis_boliviensis
ENSCPOG00000013511	PCBP1	100	99.719	ENSSSCG00000027224	PCBP1	100	99.719	Sus_scrofa
ENSCPOG00000013511	PCBP1	51	100.000	ENSTBEG00000015706	-	51	100.000	Tupaia_belangeri
ENSCPOG00000013511	PCBP1	91	99.690	ENSVVUG00000028033	PCBP1	99	99.690	Vulpes_vulpes