EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPOG00000013601 (Gene tree)
Gene ID: 100733465
Gene Symbol: SMARCA1
Alias: ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SWI|hSNF2L
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Plus strand
Length: 76604 bases
Position: chrDS563000.1:1449695-1526298
Accession: 100733465
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000030753	ResIII	PF04851.15	1.7e-12	1	1
ENSCPOP00000023009	ResIII	PF04851.15	5.7e-12	1	1
ENSCPOP00000012245	ResIII	PF04851.15	5.8e-12	1	1
ENSCPOP00000030753	DEAD	PF00270.29	7e-07	1	1
ENSCPOP00000023009	DEAD	PF00270.29	1.1e-06	1	1
ENSCPOP00000012245	DEAD	PF00270.29	1.2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000044635	SMARCA1-202	3141	-	ENSCPOP00000023009	1046 (aa)	-	A0A286XC82
ENSCPOT00000043460	SMARCA1-203	1098	-	ENSCPOP00000030753	366 (aa)	-	A0A286XZL2
ENSCPOT00000013737	SMARCA1-201	3171	XM_013142208	ENSCPOP00000012245	1056 (aa)	-	H0VP40

Gene Model

Click here to download ENSCPOG00000013601's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000013601's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPOG00000013601	SMARCA1	55	45.714	ENSCPOG00000003043	HELLS	66	46.241
ENSCPOG00000013601	SMARCA1	54	30.585	ENSCPOG00000011407	ERCC6L	51	31.402
ENSCPOG00000013601	SMARCA1	93	84.093	ENSCPOG00000002259	SMARCA5	93	84.093
ENSCPOG00000013601	SMARCA1	50	43.915	ENSCPOG00000011398	SMARCAD1	50	38.104
ENSCPOG00000013601	SMARCA1	50	35.714	ENSCPOG00000011643	-	61	33.032
ENSCPOG00000013601	SMARCA1	55	42.321	ENSCPOG00000009000	CHD1L	62	43.206

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000013601	SMARCA1	100	96.015	ENSG00000102038	SMARCA1	100	96.015	Homo_sapiens
ENSCPOG00000013601	SMARCA1	93	82.383	ENSAPOG00000016035	smarca5	98	83.479	Acanthochromis_polyacanthus
ENSCPOG00000013601	SMARCA1	95	95.575	ENSAMEG00000015218	SMARCA1	100	93.401	Ailuropoda_melanoleuca
ENSCPOG00000013601	SMARCA1	85	83.278	ENSACIG00000016982	smarca5	99	83.371	Amphilophus_citrinellus
ENSCPOG00000013601	SMARCA1	93	82.383	ENSAOCG00000015578	smarca5	95	81.426	Amphiprion_ocellaris
ENSCPOG00000013601	SMARCA1	93	82.383	ENSAPEG00000011117	smarca5	99	83.608	Amphiprion_percula
ENSCPOG00000013601	SMARCA1	97	79.487	ENSATEG00000012894	smarca5	93	83.966	Anabas_testudineus
ENSCPOG00000013601	SMARCA1	94	91.397	ENSAPLG00000013149	SMARCA1	100	91.397	Anas_platyrhynchos
ENSCPOG00000013601	SMARCA1	95	90.467	ENSACAG00000011376	SMARCA1	95	90.448	Anolis_carolinensis
ENSCPOG00000013601	SMARCA1	95	91.940	ENSANAG00000023098	SMARCA1	96	91.821	Aotus_nancymaae
ENSCPOG00000013601	SMARCA1	93	82.389	ENSACLG00000025356	smarca5	95	81.964	Astatotilapia_calliptera
ENSCPOG00000013601	SMARCA1	88	88.039	ENSAMXG00000011227	smarca1	99	89.576	Astyanax_mexicanus
ENSCPOG00000013601	SMARCA1	93	83.027	ENSAMXG00000005709	smarca5	94	82.773	Astyanax_mexicanus
ENSCPOG00000013601	SMARCA1	99	94.862	ENSBTAG00000002292	SMARCA1	96	96.545	Bos_taurus
ENSCPOG00000013601	SMARCA1	92	63.432	WBGene00002169	isw-1	96	63.432	Caenorhabditis_elegans
ENSCPOG00000013601	SMARCA1	99	95.606	ENSCJAG00000002868	SMARCA1	97	96.689	Callithrix_jacchus
ENSCPOG00000013601	SMARCA1	95	86.497	ENSCAFG00000018673	SMARCA1	99	87.882	Canis_familiaris
ENSCPOG00000013601	SMARCA1	95	97.015	ENSCAFG00020001751	SMARCA1	100	95.019	Canis_lupus_dingo
ENSCPOG00000013601	SMARCA1	100	94.986	ENSCHIG00000009837	SMARCA1	96	96.663	Capra_hircus
ENSCPOG00000013601	SMARCA1	95	97.371	ENSTSYG00000004240	SMARCA1	98	96.951	Carlito_syrichta
ENSCPOG00000013601	SMARCA1	95	93.930	ENSCCAG00000030817	SMARCA1	96	93.671	Cebus_capucinus
ENSCPOG00000013601	SMARCA1	99	95.989	ENSCATG00000015921	SMARCA1	98	95.989	Cercocebus_atys
ENSCPOG00000013601	SMARCA1	100	96.679	ENSCLAG00000002171	SMARCA1	100	96.679	Chinchilla_lanigera
ENSCPOG00000013601	SMARCA1	95	97.313	ENSCSAG00000008460	SMARCA1	97	96.981	Chlorocebus_sabaeus
ENSCPOG00000013601	SMARCA1	95	91.261	ENSCPBG00000001146	SMARCA1	94	91.343	Chrysemys_picta_bellii
ENSCPOG00000013601	SMARCA1	93	72.217	ENSCING00000004110	swi/snf	98	72.217	Ciona_intestinalis
ENSCPOG00000013601	SMARCA1	94	71.785	ENSCSAVG00000004620	-	100	74.053	Ciona_savignyi
ENSCPOG00000013601	SMARCA1	99	95.893	ENSCANG00000007183	SMARCA1	98	95.893	Colobus_angolensis_palliatus
ENSCPOG00000013601	SMARCA1	100	93.365	ENSCGRG00001010776	Smarca1	96	95.271	Cricetulus_griseus_chok1gshd
ENSCPOG00000013601	SMARCA1	96	94.538	ENSCGRG00000015301	Smarca1	98	95.569	Cricetulus_griseus_crigri
ENSCPOG00000013601	SMARCA1	93	82.383	ENSCSEG00000000328	smarca5	95	81.627	Cynoglossus_semilaevis
ENSCPOG00000013601	SMARCA1	93	81.680	ENSCVAG00000008668	smarca5	99	83.039	Cyprinodon_variegatus
ENSCPOG00000013601	SMARCA1	94	81.608	ENSDARG00000052348	smarca5	95	81.608	Danio_rerio
ENSCPOG00000013601	SMARCA1	94	84.195	ENSDARG00000012776	smarca1	98	84.004	Danio_rerio
ENSCPOG00000013601	SMARCA1	95	94.689	ENSDNOG00000004315	SMARCA1	100	92.748	Dasypus_novemcinctus
ENSCPOG00000013601	SMARCA1	100	93.833	ENSDORG00000009270	Smarca1	97	94.706	Dipodomys_ordii
ENSCPOG00000013601	SMARCA1	91	72.822	FBgn0011604	Iswi	98	71.485	Drosophila_melanogaster
ENSCPOG00000013601	SMARCA1	80	92.857	ENSETEG00000017426	SMARCA1	86	92.857	Echinops_telfairi
ENSCPOG00000013601	SMARCA1	93	80.102	ENSEBUG00000001239	smarca5	96	80.102	Eptatretus_burgeri
ENSCPOG00000013601	SMARCA1	96	92.807	ENSEASG00005008218	SMARCA1	100	92.169	Equus_asinus_asinus
ENSCPOG00000013601	SMARCA1	95	97.114	ENSECAG00000012106	SMARCA1	96	96.404	Equus_caballus
ENSCPOG00000013601	SMARCA1	78	95.364	ENSEEUG00000014927	SMARCA1	84	95.364	Erinaceus_europaeus
ENSCPOG00000013601	SMARCA1	95	85.035	ENSELUG00000010515	smarca1	98	85.194	Esox_lucius
ENSCPOG00000013601	SMARCA1	99	95.606	ENSFCAG00000018496	SMARCA1	100	95.019	Felis_catus
ENSCPOG00000013601	SMARCA1	88	91.135	ENSFALG00000000209	SMARCA1	98	92.426	Ficedula_albicollis
ENSCPOG00000013601	SMARCA1	95	98.597	ENSFDAG00000009818	SMARCA1	98	98.597	Fukomys_damarensis
ENSCPOG00000013601	SMARCA1	93	82.186	ENSFHEG00000007687	smarca5	91	84.912	Fundulus_heteroclitus
ENSCPOG00000013601	SMARCA1	94	89.980	ENSGALG00000008431	SMARCA1	97	90.495	Gallus_gallus
ENSCPOG00000013601	SMARCA1	93	81.984	ENSGAFG00000017731	smarca5	95	81.426	Gambusia_affinis
ENSCPOG00000013601	SMARCA1	92	92.379	ENSGAGG00000023575	SMARCA1	99	92.379	Gopherus_agassizii
ENSCPOG00000013601	SMARCA1	84	96.104	ENSGGOG00000012841	-	98	96.000	Gorilla_gorilla
ENSCPOG00000013601	SMARCA1	100	96.015	ENSHGLG00000003080	SMARCA1	100	96.015	Heterocephalus_glaber_female
ENSCPOG00000013601	SMARCA1	95	97.802	ENSHGLG00100001102	SMARCA1	100	97.802	Heterocephalus_glaber_male
ENSCPOG00000013601	SMARCA1	93	82.419	ENSHCOG00000005458	smarca5	95	81.727	Hippocampus_comes
ENSCPOG00000013601	SMARCA1	96	84.331	ENSIPUG00000016905	Smarca1	99	85.584	Ictalurus_punctatus
ENSCPOG00000013601	SMARCA1	96	80.157	ENSIPUG00000005229	SMARCA5	97	81.653	Ictalurus_punctatus
ENSCPOG00000013601	SMARCA1	96	97.137	ENSSTOG00000014524	SMARCA1	100	95.395	Ictidomys_tridecemlineatus
ENSCPOG00000013601	SMARCA1	96	96.260	ENSJJAG00000002593	Smarca1	97	95.813	Jaculus_jaculus
ENSCPOG00000013601	SMARCA1	93	82.317	ENSKMAG00000003777	smarca5	95	81.627	Kryptolebias_marmoratus
ENSCPOG00000013601	SMARCA1	94	81.526	ENSLBEG00000018112	smarca5	95	81.526	Labrus_bergylta
ENSCPOG00000013601	SMARCA1	90	82.185	ENSLBEG00000013295	SMARCA1	100	84.576	Labrus_bergylta
ENSCPOG00000013601	SMARCA1	96	88.571	ENSLACG00000016697	SMARCA1	98	89.154	Latimeria_chalumnae
ENSCPOG00000013601	SMARCA1	95	87.737	ENSLOCG00000014591	smarca1	97	87.737	Lepisosteus_oculatus
ENSCPOG00000013601	SMARCA1	95	96.322	ENSLAFG00000000896	SMARCA1	100	96.322	Loxodonta_africana
ENSCPOG00000013601	SMARCA1	99	95.989	ENSMFAG00000002117	SMARCA1	98	96.300	Macaca_fascicularis
ENSCPOG00000013601	SMARCA1	99	95.989	ENSMMUG00000008818	SMARCA1	99	97.086	Macaca_mulatta
ENSCPOG00000013601	SMARCA1	99	95.989	ENSMNEG00000041768	SMARCA1	98	96.300	Macaca_nemestrina
ENSCPOG00000013601	SMARCA1	100	95.583	ENSMLEG00000043198	SMARCA1	100	95.583	Mandrillus_leucophaeus
ENSCPOG00000013601	SMARCA1	93	82.186	ENSMAMG00000014294	smarca5	95	81.627	Mastacembelus_armatus
ENSCPOG00000013601	SMARCA1	93	82.389	ENSMZEG00005009369	smarca5	95	81.964	Maylandia_zebra
ENSCPOG00000013601	SMARCA1	96	89.520	ENSMGAG00000007042	SMARCA1	99	89.676	Meleagris_gallopavo
ENSCPOG00000013601	SMARCA1	100	94.402	ENSMAUG00000008133	Smarca1	96	96.067	Mesocricetus_auratus
ENSCPOG00000013601	SMARCA1	99	95.511	ENSMICG00000015768	SMARCA1	98	95.511	Microcebus_murinus
ENSCPOG00000013601	SMARCA1	100	94.402	ENSMOCG00000009464	Smarca1	100	94.402	Microtus_ochrogaster
ENSCPOG00000013601	SMARCA1	94	79.719	ENSMMOG00000005547	smarca5	99	79.719	Mola_mola
ENSCPOG00000013601	SMARCA1	98	88.803	ENSMODG00000013187	-	96	90.647	Monodelphis_domestica
ENSCPOG00000013601	SMARCA1	93	82.114	ENSMALG00000002081	smarca5	97	81.697	Monopterus_albus
ENSCPOG00000013601	SMARCA1	100	94.079	MGP_CAROLIEiJ_G0033034	Smarca1	97	95.618	Mus_caroli
ENSCPOG00000013601	SMARCA1	100	93.985	ENSMUSG00000031099	Smarca1	97	95.618	Mus_musculus
ENSCPOG00000013601	SMARCA1	100	94.079	MGP_PahariEiJ_G0031579	Smarca1	97	95.521	Mus_pahari
ENSCPOG00000013601	SMARCA1	100	94.267	MGP_SPRETEiJ_G0034192	Smarca1	100	94.267	Mus_spretus
ENSCPOG00000013601	SMARCA1	94	97.368	ENSMPUG00000017423	SMARCA1	95	93.773	Mustela_putorius_furo
ENSCPOG00000013601	SMARCA1	96	93.744	ENSMLUG00000029614	SMARCA1	97	92.411	Myotis_lucifugus
ENSCPOG00000013601	SMARCA1	95	97.686	ENSNGAG00000006492	Smarca1	100	95.351	Nannospalax_galili
ENSCPOG00000013601	SMARCA1	93	82.490	ENSNBRG00000004463	smarca5	99	81.928	Neolamprologus_brichardi
ENSCPOG00000013601	SMARCA1	94	97.065	ENSNLEG00000015179	SMARCA1	99	95.596	Nomascus_leucogenys
ENSCPOG00000013601	SMARCA1	84	88.961	ENSMEUG00000008819	SMARCA1	99	81.493	Notamacropus_eugenii
ENSCPOG00000013601	SMARCA1	100	96.300	ENSODEG00000012163	SMARCA1	100	96.300	Octodon_degus
ENSCPOG00000013601	SMARCA1	93	82.490	ENSONIG00000009993	smarca5	95	81.928	Oreochromis_niloticus
ENSCPOG00000013601	SMARCA1	92	92.791	ENSOANG00000002862	SMARCA1	99	92.791	Ornithorhynchus_anatinus
ENSCPOG00000013601	SMARCA1	95	96.119	ENSOCUG00000001047	SMARCA1	97	95.813	Oryctolagus_cuniculus
ENSCPOG00000013601	SMARCA1	93	82.317	ENSORLG00000021998	smarca5	95	81.627	Oryzias_latipes
ENSCPOG00000013601	SMARCA1	93	82.419	ENSORLG00020017679	smarca5	95	81.727	Oryzias_latipes_hni
ENSCPOG00000013601	SMARCA1	93	82.317	ENSORLG00015017210	smarca5	95	81.526	Oryzias_latipes_hsok
ENSCPOG00000013601	SMARCA1	93	82.317	ENSOMEG00000000086	smarca5	95	81.526	Oryzias_melastigma
ENSCPOG00000013601	SMARCA1	95	97.387	ENSOGAG00000004399	SMARCA1	100	95.541	Otolemur_garnettii
ENSCPOG00000013601	SMARCA1	95	96.162	ENSOARG00000014638	SMARCA1	100	97.059	Ovis_aries
ENSCPOG00000013601	SMARCA1	99	95.989	ENSPPAG00000034647	SMARCA1	98	95.989	Pan_paniscus
ENSCPOG00000013601	SMARCA1	99	95.606	ENSPPRG00000008929	SMARCA1	100	95.019	Panthera_pardus
ENSCPOG00000013601	SMARCA1	95	95.779	ENSPTIG00000000915	SMARCA1	98	95.015	Panthera_tigris_altaica
ENSCPOG00000013601	SMARCA1	99	95.989	ENSPTRG00000049876	SMARCA1	98	95.989	Pan_troglodytes
ENSCPOG00000013601	SMARCA1	99	95.989	ENSPANG00000003871	SMARCA1	98	95.989	Papio_anubis
ENSCPOG00000013601	SMARCA1	93	84.913	ENSPKIG00000013411	smarca1	96	87.342	Paramormyrops_kingsleyae
ENSCPOG00000013601	SMARCA1	95	91.102	ENSPSIG00000010101	SMARCA1	99	92.070	Pelodiscus_sinensis
ENSCPOG00000013601	SMARCA1	100	94.782	ENSPEMG00000017503	Smarca1	96	96.559	Peromyscus_maniculatus_bairdii
ENSCPOG00000013601	SMARCA1	95	91.063	ENSPCIG00000015460	SMARCA1	98	91.144	Phascolarctos_cinereus
ENSCPOG00000013601	SMARCA1	93	82.215	ENSPFOG00000007649	smarca5	95	81.426	Poecilia_formosa
ENSCPOG00000013601	SMARCA1	93	82.215	ENSPLAG00000003363	smarca5	95	81.426	Poecilia_latipinna
ENSCPOG00000013601	SMARCA1	93	82.114	ENSPMEG00000019849	smarca5	95	81.325	Poecilia_mexicana
ENSCPOG00000013601	SMARCA1	93	82.114	ENSPREG00000023250	smarca5	95	81.325	Poecilia_reticulata
ENSCPOG00000013601	SMARCA1	95	94.428	ENSPPYG00000020703	SMARCA1	96	94.158	Pongo_abelii
ENSCPOG00000013601	SMARCA1	77	96.429	ENSPCOG00000020722	SMARCA1	94	92.183	Propithecus_coquereli
ENSCPOG00000013601	SMARCA1	90	96.684	ENSPVAG00000003805	SMARCA1	97	88.541	Pteropus_vampyrus
ENSCPOG00000013601	SMARCA1	79	81.724	ENSPNYG00000012299	smarca5	92	81.501	Pundamilia_nyererei
ENSCPOG00000013601	SMARCA1	100	94.079	ENSRNOG00000003762	Smarca1	100	93.985	Rattus_norvegicus
ENSCPOG00000013601	SMARCA1	99	95.893	ENSRROG00000034167	SMARCA1	98	95.893	Rhinopithecus_roxellana
ENSCPOG00000013601	SMARCA1	96	96.517	ENSSBOG00000020641	SMARCA1	100	97.465	Saimiri_boliviensis_boliviensis
ENSCPOG00000013601	SMARCA1	92	86.008	ENSSHAG00000013518	SMARCA1	99	86.008	Sarcophilus_harrisii
ENSCPOG00000013601	SMARCA1	95	81.162	ENSSFOG00015016794	smarca5	99	82.663	Scleropages_formosus
ENSCPOG00000013601	SMARCA1	97	84.848	ENSSFOG00015009043	smarca1	98	86.169	Scleropages_formosus
ENSCPOG00000013601	SMARCA1	94	81.672	ENSSMAG00000004801	smarca5	95	81.672	Scophthalmus_maximus
ENSCPOG00000013601	SMARCA1	93	82.186	ENSSDUG00000020690	smarca5	96	81.627	Seriola_dumerili
ENSCPOG00000013601	SMARCA1	93	82.186	ENSSLDG00000025190	smarca5	96	81.627	Seriola_lalandi_dorsalis
ENSCPOG00000013601	SMARCA1	88	90.217	ENSSARG00000000842	SMARCA1	92	90.217	Sorex_araneus
ENSCPOG00000013601	SMARCA1	95	89.769	ENSSPUG00000000590	SMARCA1	97	88.462	Sphenodon_punctatus
ENSCPOG00000013601	SMARCA1	93	81.984	ENSSPAG00000002894	smarca5	97	83.479	Stegastes_partitus
ENSCPOG00000013601	SMARCA1	95	96.158	ENSSSCG00000012649	SMARCA1	96	96.024	Sus_scrofa
ENSCPOG00000013601	SMARCA1	94	91.093	ENSTGUG00000003899	-	100	91.093	Taeniopygia_guttata
ENSCPOG00000013601	SMARCA1	93	82.591	ENSTRUG00000014094	smarca5	95	82.028	Takifugu_rubripes
ENSCPOG00000013601	SMARCA1	93	81.772	ENSTNIG00000017717	smarca5	94	80.924	Tetraodon_nigroviridis
ENSCPOG00000013601	SMARCA1	95	90.863	ENSTBEG00000014973	SMARCA1	100	90.863	Tupaia_belangeri
ENSCPOG00000013601	SMARCA1	95	94.242	ENSTTRG00000006168	SMARCA1	100	94.242	Tursiops_truncatus
ENSCPOG00000013601	SMARCA1	95	96.617	ENSUAMG00000020201	SMARCA1	100	94.643	Ursus_americanus
ENSCPOG00000013601	SMARCA1	94	92.901	ENSUMAG00000004073	SMARCA1	97	97.324	Ursus_maritimus
ENSCPOG00000013601	SMARCA1	80	98.730	ENSVPAG00000010492	-	86	98.730	Vicugna_pacos
ENSCPOG00000013601	SMARCA1	95	96.918	ENSVVUG00000008878	SMARCA1	100	96.392	Vulpes_vulpes
ENSCPOG00000013601	SMARCA1	95	88.024	ENSXETG00000001526	smarca1	99	88.024	Xenopus_tropicalis
ENSCPOG00000013601	SMARCA1	93	81.883	ENSXCOG00000011170	smarca5	98	81.325	Xiphophorus_couchianus
ENSCPOG00000013601	SMARCA1	93	81.883	ENSXMAG00000009678	smarca5	97	83.991	Xiphophorus_maculatus