EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPOG00000013633 (Gene tree)
Gene ID: 100715402
Gene Symbol: PABPC1L
Alias: C20orf119|PABPC1L1|dJ1069P2.3|ePAB
Full Name: poly(A) binding protein cytoplasmic 1 like
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Plus strand
Length: 22406 bases
Position: chrDS562900.1:10951486-10973891
Accession: 100715402
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000012273	PABP	PF00658.18	2.1e-26	1	1
ENSCPOP00000012273	RRM_5	PF13893.6	3.3e-12	1	1
ENSCPOP00000012273	RRM_1	PF00076.22	3.5e-86	1	4
ENSCPOP00000012273	RRM_1	PF00076.22	3.5e-86	2	4
ENSCPOP00000012273	RRM_1	PF00076.22	3.5e-86	3	4
ENSCPOP00000012273	RRM_1	PF00076.22	3.5e-86	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000013769	PABPC1L-201	2385	XM_013150350	ENSCPOP00000012273	618 (aa)	XP_013005804	H0VP64

Gene Model

Click here to download ENSCPOG00000013633's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000013633's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPOG00000013633	PABPC1L	61	57.303	ENSCPOG00000002555	PABPC5	96	57.025
ENSCPOG00000013633	PABPC1L	57	38.889	ENSCPOG00000014625	-	50	38.889
ENSCPOG00000013633	PABPC1L	53	34.211	ENSCPOG00000036381	CELF1	78	34.211
ENSCPOG00000013633	PABPC1L	59	70.051	ENSCPOG00000009525	-	99	70.051
ENSCPOG00000013633	PABPC1L	55	30.519	ENSCPOG00000026092	HNRNPA0	50	30.323
ENSCPOG00000013633	PABPC1L	60	33.735	ENSCPOG00000010472	ELAVL2	88	33.735
ENSCPOG00000013633	PABPC1L	99	64.205	ENSCPOG00000009552	PABPC4	98	64.434
ENSCPOG00000013633	PABPC1L	61	58.242	ENSCPOG00000033167	PABPC4L	98	58.242
ENSCPOG00000013633	PABPC1L	98	64.184	ENSCPOG00000012917	PABPC1	95	64.184
ENSCPOG00000013633	PABPC1L	50	35.294	ENSCPOG00000003539	CELF3	66	33.663
ENSCPOG00000013633	PABPC1L	59	34.921	ENSCPOG00000008267	SF3B4	59	35.450
ENSCPOG00000013633	PABPC1L	59	36.471	ENSCPOG00000012567	CELF2	54	36.471

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000013633	PABPC1L	100	83.871	ENSG00000101104	PABPC1L	99	89.815	Homo_sapiens
ENSCPOG00000013633	PABPC1L	99	62.658	ENSAPOG00000010842	pabpc1l	99	63.840	Acanthochromis_polyacanthus
ENSCPOG00000013633	PABPC1L	99	73.023	ENSAMEG00000004099	PABPC1L	100	73.791	Ailuropoda_melanoleuca
ENSCPOG00000013633	PABPC1L	99	66.815	ENSACIG00000021004	-	99	66.815	Amphilophus_citrinellus
ENSCPOG00000013633	PABPC1L	99	63.009	ENSAOCG00000006167	-	99	63.867	Amphiprion_ocellaris
ENSCPOG00000013633	PABPC1L	99	70.096	ENSAPEG00000010558	-	92	77.228	Amphiprion_percula
ENSCPOG00000013633	PABPC1L	99	65.539	ENSATEG00000007428	pabpc1l	99	65.539	Anabas_testudineus
ENSCPOG00000013633	PABPC1L	98	71.729	ENSAPLG00000008415	PABPC1L	98	71.820	Anas_platyrhynchos
ENSCPOG00000013633	PABPC1L	99	70.560	ENSACAG00000011841	PABPC1L	98	70.560	Anolis_carolinensis
ENSCPOG00000013633	PABPC1L	100	81.452	ENSANAG00000026826	PABPC1L	100	81.452	Aotus_nancymaae
ENSCPOG00000013633	PABPC1L	99	63.911	ENSACLG00000024791	pabpc1l	99	63.911	Astatotilapia_calliptera
ENSCPOG00000013633	PABPC1L	99	66.561	ENSAMXG00000013552	pabpc1l	99	66.561	Astyanax_mexicanus
ENSCPOG00000013633	PABPC1L	62	77.043	ENSBTAG00000016849	PABPC1L	78	77.043	Bos_taurus
ENSCPOG00000013633	PABPC1L	55	92.857	ENSBTAG00000055300	-	100	92.857	Bos_taurus
ENSCPOG00000013633	PABPC1L	59	74.713	ENSCJAG00000038506	-	100	74.713	Callithrix_jacchus
ENSCPOG00000013633	PABPC1L	100	81.935	ENSCJAG00000017628	PABPC1L	100	81.935	Callithrix_jacchus
ENSCPOG00000013633	PABPC1L	99	70.884	ENSCAFG00000009573	PABPC1L	100	70.884	Canis_familiaris
ENSCPOG00000013633	PABPC1L	99	81.656	ENSCAFG00020013828	PABPC1L	99	81.656	Canis_lupus_dingo
ENSCPOG00000013633	PABPC1L	97	79.305	ENSCHIG00000025759	PABPC1L	91	79.305	Capra_hircus
ENSCPOG00000013633	PABPC1L	100	80.484	ENSTSYG00000006645	PABPC1L	100	80.484	Carlito_syrichta
ENSCPOG00000013633	PABPC1L	99	96.350	ENSCAPG00000014519	PABPC1L	100	96.350	Cavia_aperea
ENSCPOG00000013633	PABPC1L	100	81.613	ENSCCAG00000023338	PABPC1L	100	81.613	Cebus_capucinus
ENSCPOG00000013633	PABPC1L	100	83.548	ENSCATG00000034065	PABPC1L	100	83.548	Cercocebus_atys
ENSCPOG00000013633	PABPC1L	100	93.204	ENSCLAG00000005298	PABPC1L	100	93.204	Chinchilla_lanigera
ENSCPOG00000013633	PABPC1L	100	83.710	ENSCSAG00000014242	PABPC1L	100	83.710	Chlorocebus_sabaeus
ENSCPOG00000013633	PABPC1L	72	78.555	ENSCPBG00000017755	-	99	78.555	Chrysemys_picta_bellii
ENSCPOG00000013633	PABPC1L	53	78.788	ENSCPBG00000007810	-	83	78.788	Chrysemys_picta_bellii
ENSCPOG00000013633	PABPC1L	97	48.509	ENSCING00000002796	-	97	48.509	Ciona_intestinalis
ENSCPOG00000013633	PABPC1L	97	55.519	ENSCSAVG00000003102	-	100	78.767	Ciona_savignyi
ENSCPOG00000013633	PABPC1L	79	77.108	ENSCSAVG00000004246	-	86	77.108	Ciona_savignyi
ENSCPOG00000013633	PABPC1L	100	79.014	ENSCANG00000037530	PABPC1L	100	79.014	Colobus_angolensis_palliatus
ENSCPOG00000013633	PABPC1L	99	76.661	ENSCGRG00001021938	Pabpc1l	99	76.661	Cricetulus_griseus_chok1gshd
ENSCPOG00000013633	PABPC1L	99	76.661	ENSCGRG00000007946	Pabpc1l	99	76.661	Cricetulus_griseus_crigri
ENSCPOG00000013633	PABPC1L	99	62.109	ENSCSEG00000021295	pabpc1l	99	62.109	Cynoglossus_semilaevis
ENSCPOG00000013633	PABPC1L	99	66.992	ENSCVAG00000015943	-	86	81.679	Cyprinodon_variegatus
ENSCPOG00000013633	PABPC1L	99	66.986	ENSDARG00000002597	pabpc1l	88	83.846	Danio_rerio
ENSCPOG00000013633	PABPC1L	99	82.553	ENSDNOG00000048450	PABPC1L	99	82.553	Dasypus_novemcinctus
ENSCPOG00000013633	PABPC1L	99	83.657	ENSDORG00000001067	Pabpc1l	99	83.657	Dipodomys_ordii
ENSCPOG00000013633	PABPC1L	96	86.179	ENSETEG00000009969	PABPC1L	73	86.179	Echinops_telfairi
ENSCPOG00000013633	PABPC1L	55	92.857	ENSEASG00005023408	-	100	92.857	Equus_asinus_asinus
ENSCPOG00000013633	PABPC1L	53	77.778	ENSEASG00005023407	-	73	77.778	Equus_asinus_asinus
ENSCPOG00000013633	PABPC1L	67	81.624	ENSECAG00000040139	-	83	81.624	Equus_caballus
ENSCPOG00000013633	PABPC1L	100	77.742	ENSEEUG00000005978	PABPC1L	100	77.742	Erinaceus_europaeus
ENSCPOG00000013633	PABPC1L	99	67.143	ENSELUG00000001811	pabpc1l	99	67.143	Esox_lucius
ENSCPOG00000013633	PABPC1L	99	81.818	ENSFCAG00000011692	PABPC1L	99	81.818	Felis_catus
ENSCPOG00000013633	PABPC1L	82	74.653	ENSFALG00000005372	PABPC1L	85	74.653	Ficedula_albicollis
ENSCPOG00000013633	PABPC1L	100	87.702	ENSFDAG00000008291	PABPC1L	100	88.835	Fukomys_damarensis
ENSCPOG00000013633	PABPC1L	99	66.236	ENSFHEG00000003398	pabpc1l	99	66.236	Fundulus_heteroclitus
ENSCPOG00000013633	PABPC1L	99	66.181	ENSGMOG00000004437	pabpc1l	98	66.181	Gadus_morhua
ENSCPOG00000013633	PABPC1L	86	83.146	ENSGALG00000004123	PABPC1L	98	83.146	Gallus_gallus
ENSCPOG00000013633	PABPC1L	99	62.175	ENSGAFG00000021057	pabpc1l	99	62.175	Gambusia_affinis
ENSCPOG00000013633	PABPC1L	99	63.578	ENSGACG00000002792	pabpc1l	99	63.578	Gasterosteus_aculeatus
ENSCPOG00000013633	PABPC1L	99	72.684	ENSGAGG00000000589	PABPC1L	98	72.684	Gopherus_agassizii
ENSCPOG00000013633	PABPC1L	100	84.032	ENSGGOG00000004584	PABPC1L	100	84.032	Gorilla_gorilla
ENSCPOG00000013633	PABPC1L	99	63.752	ENSHBUG00000006134	pabpc1l	99	63.752	Haplochromis_burtoni
ENSCPOG00000013633	PABPC1L	100	93.215	ENSHGLG00000008434	PABPC1L	100	93.215	Heterocephalus_glaber_female
ENSCPOG00000013633	PABPC1L	58	78.652	ENSHGLG00100019506	-	100	78.652	Heterocephalus_glaber_male
ENSCPOG00000013633	PABPC1L	100	93.215	ENSHGLG00100012151	PABPC1L	100	93.215	Heterocephalus_glaber_male
ENSCPOG00000013633	PABPC1L	99	63.711	ENSHCOG00000009270	pabpc1l	99	64.333	Hippocampus_comes
ENSCPOG00000013633	PABPC1L	59	59.195	ENSIPUG00000006760	-	88	59.195	Ictalurus_punctatus
ENSCPOG00000013633	PABPC1L	59	59.770	ENSIPUG00000006780	-	85	59.770	Ictalurus_punctatus
ENSCPOG00000013633	PABPC1L	99	66.984	ENSIPUG00000012602	pabpc1l	99	66.984	Ictalurus_punctatus
ENSCPOG00000013633	PABPC1L	100	84.677	ENSSTOG00000003739	PABPC1L	100	84.677	Ictidomys_tridecemlineatus
ENSCPOG00000013633	PABPC1L	99	69.147	ENSJJAG00000022406	Pabpc1l	99	66.937	Jaculus_jaculus
ENSCPOG00000013633	PABPC1L	99	65.968	ENSKMAG00000016847	pabpc1l	99	65.968	Kryptolebias_marmoratus
ENSCPOG00000013633	PABPC1L	99	63.217	ENSLBEG00000010084	pabpc1l	99	63.217	Labrus_bergylta
ENSCPOG00000013633	PABPC1L	99	66.244	ENSLACG00000005762	PABPC1L	99	67.582	Latimeria_chalumnae
ENSCPOG00000013633	PABPC1L	99	67.732	ENSLOCG00000007519	pabpc1l	98	67.732	Lepisosteus_oculatus
ENSCPOG00000013633	PABPC1L	99	80.480	ENSLAFG00000003553	PABPC1L	100	80.480	Loxodonta_africana
ENSCPOG00000013633	PABPC1L	100	83.387	ENSMFAG00000040365	PABPC1L	100	83.387	Macaca_fascicularis
ENSCPOG00000013633	PABPC1L	100	81.059	ENSMNEG00000032298	PABPC1L	100	81.059	Macaca_nemestrina
ENSCPOG00000013633	PABPC1L	100	83.548	ENSMLEG00000043139	PABPC1L	100	83.548	Mandrillus_leucophaeus
ENSCPOG00000013633	PABPC1L	97	64.052	ENSMAMG00000011854	pabpc1l	97	64.052	Mastacembelus_armatus
ENSCPOG00000013633	PABPC1L	99	63.911	ENSMZEG00005023713	pabpc1l	99	63.911	Maylandia_zebra
ENSCPOG00000013633	PABPC1L	99	72.186	ENSMGAG00000003674	PABPC1L	98	72.186	Meleagris_gallopavo
ENSCPOG00000013633	PABPC1L	99	75.162	ENSMOCG00000013186	Pabpc1l	99	75.162	Microtus_ochrogaster
ENSCPOG00000013633	PABPC1L	99	65.000	ENSMMOG00000020574	-	90	82.308	Mola_mola
ENSCPOG00000013633	PABPC1L	94	73.891	ENSMODG00000016198	PABPC1L	99	73.798	Monodelphis_domestica
ENSCPOG00000013633	PABPC1L	97	62.848	ENSMALG00000021622	pabpc1l	100	62.848	Monopterus_albus
ENSCPOG00000013633	PABPC1L	99	76.509	MGP_CAROLIEiJ_G0024627	Pabpc1l	99	76.509	Mus_caroli
ENSCPOG00000013633	PABPC1L	99	76.183	ENSMUSG00000054582	Pabpc1l	99	76.183	Mus_musculus
ENSCPOG00000013633	PABPC1L	99	76.710	MGP_PahariEiJ_G0026071	Pabpc1l	99	76.710	Mus_pahari
ENSCPOG00000013633	PABPC1L	99	76.346	MGP_SPRETEiJ_G0025549	Pabpc1l	99	76.346	Mus_spretus
ENSCPOG00000013633	PABPC1L	99	79.968	ENSMPUG00000017646	PABPC1L	99	79.968	Mustela_putorius_furo
ENSCPOG00000013633	PABPC1L	98	75.362	ENSMLUG00000006324	PABPC1L	97	75.362	Myotis_lucifugus
ENSCPOG00000013633	PABPC1L	99	79.126	ENSNGAG00000010458	Pabpc1l	99	79.126	Nannospalax_galili
ENSCPOG00000013633	PABPC1L	99	63.738	ENSNBRG00000016633	pabpc1l	99	70.096	Neolamprologus_brichardi
ENSCPOG00000013633	PABPC1L	100	64.194	ENSMEUG00000007905	-	100	64.194	Notamacropus_eugenii
ENSCPOG00000013633	PABPC1L	100	81.159	ENSOPRG00000011846	PABPC1L	100	81.159	Ochotona_princeps
ENSCPOG00000013633	PABPC1L	56	75.163	ENSODEG00000002920	-	92	75.163	Octodon_degus
ENSCPOG00000013633	PABPC1L	100	82.201	ENSODEG00000015482	PABPC1L	100	82.201	Octodon_degus
ENSCPOG00000013633	PABPC1L	99	64.013	ENSONIG00000017314	pabpc1l	99	64.013	Oreochromis_niloticus
ENSCPOG00000013633	PABPC1L	89	63.685	ENSOANG00000015793	-	100	63.685	Ornithorhynchus_anatinus
ENSCPOG00000013633	PABPC1L	99	75.457	ENSOCUG00000003005	PABPC1L	100	75.457	Oryctolagus_cuniculus
ENSCPOG00000013633	PABPC1L	99	65.056	ENSORLG00000010322	pabpc1l	99	68.750	Oryzias_latipes
ENSCPOG00000013633	PABPC1L	99	64.734	ENSORLG00020021193	pabpc1l	99	68.750	Oryzias_latipes_hni
ENSCPOG00000013633	PABPC1L	99	64.895	ENSORLG00015017018	pabpc1l	99	68.750	Oryzias_latipes_hsok
ENSCPOG00000013633	PABPC1L	99	61.339	ENSOMEG00000010789	pabpc1l	99	61.339	Oryzias_melastigma
ENSCPOG00000013633	PABPC1L	99	79.841	ENSOGAG00000032999	PABPC1L	100	79.841	Otolemur_garnettii
ENSCPOG00000013633	PABPC1L	99	80.782	ENSOARG00000004578	PABPC1L	99	80.782	Ovis_aries
ENSCPOG00000013633	PABPC1L	100	83.710	ENSPPAG00000039677	PABPC1L	100	83.710	Pan_paniscus
ENSCPOG00000013633	PABPC1L	62	78.086	ENSPPRG00000019327	-	98	78.086	Panthera_pardus
ENSCPOG00000013633	PABPC1L	99	82.131	ENSPTIG00000006524	PABPC1L	99	82.131	Panthera_tigris_altaica
ENSCPOG00000013633	PABPC1L	62	89.506	ENSPTRG00000013531	PABPC1L	99	89.506	Pan_troglodytes
ENSCPOG00000013633	PABPC1L	100	83.548	ENSPANG00000018788	PABPC1L	100	83.548	Papio_anubis
ENSCPOG00000013633	PABPC1L	53	79.231	ENSPKIG00000016810	-	93	79.231	Paramormyrops_kingsleyae
ENSCPOG00000013633	PABPC1L	99	66.879	ENSPKIG00000007322	pabpc1l	99	66.879	Paramormyrops_kingsleyae
ENSCPOG00000013633	PABPC1L	68	78.998	ENSPSIG00000013289	PABPC1L	99	78.998	Pelodiscus_sinensis
ENSCPOG00000013633	PABPC1L	72	62.814	ENSPMGG00000023121	-	92	62.814	Periophthalmus_magnuspinnatus
ENSCPOG00000013633	PABPC1L	62	74.884	ENSPMGG00000023117	pabpc1l	92	81.061	Periophthalmus_magnuspinnatus
ENSCPOG00000013633	PABPC1L	99	76.346	ENSPEMG00000020671	Pabpc1l	99	76.346	Peromyscus_maniculatus_bairdii
ENSCPOG00000013633	PABPC1L	99	66.395	ENSPFOG00000013241	pabpc1l	99	65.650	Poecilia_formosa
ENSCPOG00000013633	PABPC1L	99	65.650	ENSPLAG00000017490	-	99	65.650	Poecilia_latipinna
ENSCPOG00000013633	PABPC1L	53	82.443	ENSPLAG00000023686	-	92	82.443	Poecilia_latipinna
ENSCPOG00000013633	PABPC1L	99	65.751	ENSPMEG00000007677	pabpc1l	99	65.751	Poecilia_mexicana
ENSCPOG00000013633	PABPC1L	53	82.443	ENSPMEG00000009185	-	89	82.443	Poecilia_mexicana
ENSCPOG00000013633	PABPC1L	66	74.384	ENSPREG00000015886	pabpc1l	99	74.384	Poecilia_reticulata
ENSCPOG00000013633	PABPC1L	100	83.871	ENSPPYG00000011042	PABPC1L	100	83.871	Pongo_abelii
ENSCPOG00000013633	PABPC1L	61	85.938	ENSPCAG00000011787	-	74	85.938	Procavia_capensis
ENSCPOG00000013633	PABPC1L	99	81.729	ENSPCOG00000020630	PABPC1L	99	81.729	Propithecus_coquereli
ENSCPOG00000013633	PABPC1L	99	78.409	ENSPVAG00000012663	PABPC1L	99	78.409	Pteropus_vampyrus
ENSCPOG00000013633	PABPC1L	99	63.029	ENSPNYG00000004101	pabpc1l	99	70.096	Pundamilia_nyererei
ENSCPOG00000013633	PABPC1L	99	60.828	ENSPNAG00000021248	pabpc1l	99	60.828	Pygocentrus_nattereri
ENSCPOG00000013633	PABPC1L	99	75.929	ENSRNOG00000012750	Pabpc1l	100	75.929	Rattus_norvegicus
ENSCPOG00000013633	PABPC1L	100	83.548	ENSRBIG00000035381	PABPC1L	100	83.548	Rhinopithecus_bieti
ENSCPOG00000013633	PABPC1L	100	83.226	ENSRROG00000044498	PABPC1L	100	83.226	Rhinopithecus_roxellana
ENSCPOG00000013633	PABPC1L	100	81.290	ENSSBOG00000009532	-	100	81.290	Saimiri_boliviensis_boliviensis
ENSCPOG00000013633	PABPC1L	98	68.293	ENSSHAG00000011446	PABPC1L	100	68.293	Sarcophilus_harrisii
ENSCPOG00000013633	PABPC1L	99	68.095	ENSSFOG00015017304	pabpc1l	99	68.095	Scleropages_formosus
ENSCPOG00000013633	PABPC1L	99	64.274	ENSSMAG00000010516	pabpc1l	98	82.171	Scophthalmus_maximus
ENSCPOG00000013633	PABPC1L	99	64.809	ENSSDUG00000014743	pabpc1l	99	64.809	Seriola_dumerili
ENSCPOG00000013633	PABPC1L	99	71.053	ENSSLDG00000006981	pabpc1l	95	73.973	Seriola_lalandi_dorsalis
ENSCPOG00000013633	PABPC1L	99	70.288	ENSSPUG00000004233	PABPC1L	98	70.288	Sphenodon_punctatus
ENSCPOG00000013633	PABPC1L	99	62.357	ENSSPAG00000017137	pabpc1l	99	62.357	Stegastes_partitus
ENSCPOG00000013633	PABPC1L	99	79.316	ENSSSCG00000007382	PABPC1L	99	79.316	Sus_scrofa
ENSCPOG00000013633	PABPC1L	99	70.000	ENSTGUG00000005114	PABPC1L	99	70.000	Taeniopygia_guttata
ENSCPOG00000013633	PABPC1L	97	64.773	ENSTRUG00000011085	pabpc1l	97	64.773	Takifugu_rubripes
ENSCPOG00000013633	PABPC1L	99	62.658	ENSTNIG00000017903	pabpc1l	98	62.658	Tetraodon_nigroviridis
ENSCPOG00000013633	PABPC1L	94	88.699	ENSTBEG00000002851	PABPC1L	80	88.699	Tupaia_belangeri
ENSCPOG00000013633	PABPC1L	94	78.866	ENSTTRG00000007618	PABPC1L	100	78.930	Tursiops_truncatus
ENSCPOG00000013633	PABPC1L	99	79.869	ENSUAMG00000017682	PABPC1L	99	79.869	Ursus_americanus
ENSCPOG00000013633	PABPC1L	68	85.637	ENSUMAG00000025436	PABPC1L	94	85.637	Ursus_maritimus
ENSCPOG00000013633	PABPC1L	99	89.328	ENSVVUG00000018939	PABPC1L	99	89.328	Vulpes_vulpes
ENSCPOG00000013633	PABPC1L	99	67.252	ENSXETG00000022831	pabpc1l	98	67.252	Xenopus_tropicalis
ENSCPOG00000013633	PABPC1L	99	66.287	ENSXCOG00000005459	pabpc1l	99	78.723	Xiphophorus_couchianus
ENSCPOG00000013633	PABPC1L	99	65.378	ENSXMAG00000017135	pabpc1l	99	65.378	Xiphophorus_maculatus