EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCPOG00000013995 (Gene tree)
Gene ID: 100729381
Gene Symbol: TARBP1
Alias: TRM3|TRMT3|TRP-185
Full Name: TAR (HIV-1) RNA binding protein 1
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Minus strand
Length: 60693 bases
Position: chrDS562871.1:3701129-3761821
Accession: 100729381
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000012612	SpoU_methylase	PF00588.19	1.8e-30	1	1
ENSCPOP00000025885	SpoU_methylase	PF00588.19	1.8e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000014137	TARBP1-202	6038	XM_003473502	ENSCPOP00000012612	1591 (aa)	XP_003473550	H0VQ13
ENSCPOT00000039682	TARBP1-201	6131	-	ENSCPOP00000025885	1622 (aa)	-	A0A286XK59

Gene Model

Click here to download ENSCPOG00000013995's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000013995's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000013995	TARBP1	99	76.543	ENSG00000059588	TARBP1	99	75.926	Homo_sapiens
ENSCPOG00000013995	TARBP1	93	42.967	ENSAPOG00000016419	si:dkey-85a20.4	85	45.365	Acanthochromis_polyacanthus
ENSCPOG00000013995	TARBP1	86	78.859	ENSAMEG00000003359	TARBP1	99	78.639	Ailuropoda_melanoleuca
ENSCPOG00000013995	TARBP1	92	44.312	ENSATEG00000020266	si:dkey-85a20.4	88	45.342	Anabas_testudineus
ENSCPOG00000013995	TARBP1	85	63.085	ENSAPLG00000007666	TARBP1	99	63.817	Anas_platyrhynchos
ENSCPOG00000013995	TARBP1	98	56.226	ENSACAG00000001142	TARBP1	98	55.562	Anolis_carolinensis
ENSCPOG00000013995	TARBP1	93	75.000	ENSANAG00000022031	TARBP1	96	75.000	Aotus_nancymaae
ENSCPOG00000013995	TARBP1	100	74.830	ENSBTAG00000004517	TARBP1	99	75.875	Bos_taurus
ENSCPOG00000013995	TARBP1	99	75.788	ENSCJAG00000018155	TARBP1	99	75.849	Callithrix_jacchus
ENSCPOG00000013995	TARBP1	89	77.599	ENSCAFG00000011533	TARBP1	99	77.935	Canis_familiaris
ENSCPOG00000013995	TARBP1	99	76.079	ENSCAFG00020027141	TARBP1	99	75.586	Canis_lupus_dingo
ENSCPOG00000013995	TARBP1	99	74.118	ENSCHIG00000011437	TARBP1	99	74.056	Capra_hircus
ENSCPOG00000013995	TARBP1	82	77.582	ENSTSYG00000010382	TARBP1	97	77.506	Carlito_syrichta
ENSCPOG00000013995	TARBP1	80	85.658	ENSCAPG00000010831	TARBP1	100	85.658	Cavia_aperea
ENSCPOG00000013995	TARBP1	99	76.096	ENSCCAG00000037278	TARBP1	99	80.541	Cebus_capucinus
ENSCPOG00000013995	TARBP1	99	76.049	ENSCATG00000011754	TARBP1	99	75.617	Cercocebus_atys
ENSCPOG00000013995	TARBP1	85	91.807	ENSCLAG00000003655	TARBP1	99	91.807	Chinchilla_lanigera
ENSCPOG00000013995	TARBP1	80	78.254	ENSCSAG00000010100	TARBP1	99	78.176	Chlorocebus_sabaeus
ENSCPOG00000013995	TARBP1	94	61.478	ENSCPBG00000005587	TARBP1	98	60.752	Chrysemys_picta_bellii
ENSCPOG00000013995	TARBP1	85	78.792	ENSCANG00000034343	TARBP1	99	78.719	Colobus_angolensis_palliatus
ENSCPOG00000013995	TARBP1	99	75.299	ENSCGRG00001016690	Tarbp1	99	74.481	Cricetulus_griseus_chok1gshd
ENSCPOG00000013995	TARBP1	91	75.869	ENSCGRG00000016893	Tarbp1	96	77.308	Cricetulus_griseus_crigri
ENSCPOG00000013995	TARBP1	99	39.606	ENSCSEG00000005255	si:dkey-85a20.4	86	49.531	Cynoglossus_semilaevis
ENSCPOG00000013995	TARBP1	86	45.971	ENSDARG00000079055	si:dkey-85a20.4	99	55.190	Danio_rerio
ENSCPOG00000013995	TARBP1	99	73.366	ENSDNOG00000008637	TARBP1	99	73.547	Dasypus_novemcinctus
ENSCPOG00000013995	TARBP1	81	73.940	ENSDORG00000007984	Tarbp1	100	74.228	Dipodomys_ordii
ENSCPOG00000013995	TARBP1	99	76.861	ENSEASG00005000252	TARBP1	99	76.173	Equus_asinus_asinus
ENSCPOG00000013995	TARBP1	99	76.975	ENSECAG00000023673	TARBP1	99	76.852	Equus_caballus
ENSCPOG00000013995	TARBP1	86	44.374	ENSELUG00000012193	si:dkey-85a20.4	86	44.429	Esox_lucius
ENSCPOG00000013995	TARBP1	99	73.129	ENSFCAG00000014183	TARBP1	99	73.013	Felis_catus
ENSCPOG00000013995	TARBP1	81	64.625	ENSFALG00000013565	TARBP1	99	64.509	Ficedula_albicollis
ENSCPOG00000013995	TARBP1	80	85.616	ENSFDAG00000001308	TARBP1	100	85.616	Fukomys_damarensis
ENSCPOG00000013995	TARBP1	99	36.000	ENSFHEG00000007565	si:dkey-85a20.4	80	53.678	Fundulus_heteroclitus
ENSCPOG00000013995	TARBP1	85	43.890	ENSGMOG00000004549	si:dkey-85a20.4	98	43.962	Gadus_morhua
ENSCPOG00000013995	TARBP1	99	55.652	ENSGALG00000011000	TARBP1	99	56.433	Gallus_gallus
ENSCPOG00000013995	TARBP1	99	40.460	ENSGAFG00000007387	si:dkey-85a20.4	85	43.543	Gambusia_affinis
ENSCPOG00000013995	TARBP1	85	45.166	ENSGACG00000005865	si:dkey-85a20.4	99	44.933	Gasterosteus_aculeatus
ENSCPOG00000013995	TARBP1	93	66.935	ENSGAGG00000012102	TARBP1	99	62.345	Gopherus_agassizii
ENSCPOG00000013995	TARBP1	86	76.895	ENSGGOG00000022879	TARBP1	99	76.968	Gorilla_gorilla
ENSCPOG00000013995	TARBP1	94	42.393	ENSHBUG00000008877	si:dkey-85a20.4	85	45.080	Haplochromis_burtoni
ENSCPOG00000013995	TARBP1	100	90.327	ENSHGLG00000011592	TARBP1	100	90.327	Heterocephalus_glaber_female
ENSCPOG00000013995	TARBP1	94	90.355	ENSHGLG00100015169	TARBP1	100	91.304	Heterocephalus_glaber_male
ENSCPOG00000013995	TARBP1	84	43.599	ENSIPUG00000005249	si:dkey-85a20.4	81	43.608	Ictalurus_punctatus
ENSCPOG00000013995	TARBP1	89	75.037	ENSSTOG00000032291	TARBP1	99	75.037	Ictidomys_tridecemlineatus
ENSCPOG00000013995	TARBP1	93	74.835	ENSJJAG00000017840	Tarbp1	99	74.835	Jaculus_jaculus
ENSCPOG00000013995	TARBP1	75	53.000	ENSKMAG00000017546	si:dkey-85a20.4	69	53.099	Kryptolebias_marmoratus
ENSCPOG00000013995	TARBP1	65	50.863	ENSLBEG00000012132	si:dkey-85a20.4	79	50.863	Labrus_bergylta
ENSCPOG00000013995	TARBP1	99	49.268	ENSLACG00000004337	TARBP1	99	49.176	Latimeria_chalumnae
ENSCPOG00000013995	TARBP1	99	45.284	ENSLOCG00000016214	si:dkey-85a20.4	86	49.364	Lepisosteus_oculatus
ENSCPOG00000013995	TARBP1	96	73.971	ENSLAFG00000011394	TARBP1	100	74.351	Loxodonta_africana
ENSCPOG00000013995	TARBP1	99	73.897	ENSMFAG00000041068	TARBP1	99	73.230	Macaca_fascicularis
ENSCPOG00000013995	TARBP1	99	74.090	ENSMMUG00000021703	TARBP1	99	74.028	Macaca_mulatta
ENSCPOG00000013995	TARBP1	99	76.405	ENSMNEG00000045002	TARBP1	99	76.343	Macaca_nemestrina
ENSCPOG00000013995	TARBP1	85	78.566	ENSMLEG00000044182	TARBP1	99	78.492	Mandrillus_leucophaeus
ENSCPOG00000013995	TARBP1	96	42.438	ENSMAMG00000021760	si:dkey-85a20.4	88	44.391	Mastacembelus_armatus
ENSCPOG00000013995	TARBP1	94	42.476	ENSMZEG00005005751	si:dkey-85a20.4	85	45.010	Maylandia_zebra
ENSCPOG00000013995	TARBP1	100	74.828	ENSMAUG00000020968	Tarbp1	99	74.781	Mesocricetus_auratus
ENSCPOG00000013995	TARBP1	99	70.025	ENSMICG00000015280	TARBP1	99	69.603	Microcebus_murinus
ENSCPOG00000013995	TARBP1	99	74.465	ENSMOCG00000004128	Tarbp1	99	73.711	Microtus_ochrogaster
ENSCPOG00000013995	TARBP1	99	40.437	ENSMMOG00000007795	si:dkey-85a20.4	84	43.781	Mola_mola
ENSCPOG00000013995	TARBP1	99	66.203	ENSMODG00000008504	TARBP1	99	66.324	Monodelphis_domestica
ENSCPOG00000013995	TARBP1	86	44.964	ENSMALG00000002916	si:dkey-85a20.4	85	44.964	Monopterus_albus
ENSCPOG00000013995	TARBP1	99	73.668	MGP_CAROLIEiJ_G0031729	Tarbp1	99	72.476	Mus_caroli
ENSCPOG00000013995	TARBP1	99	73.292	ENSMUSG00000090290	Tarbp1	99	72.226	Mus_musculus
ENSCPOG00000013995	TARBP1	99	73.638	MGP_PahariEiJ_G0023326	Tarbp1	99	72.511	Mus_pahari
ENSCPOG00000013995	TARBP1	100	73.325	MGP_SPRETEiJ_G0032846	Tarbp1	100	72.260	Mus_spretus
ENSCPOG00000013995	TARBP1	78	77.115	ENSMPUG00000002802	TARBP1	99	76.774	Mustela_putorius_furo
ENSCPOG00000013995	TARBP1	85	71.845	ENSMLUG00000002414	TARBP1	99	72.064	Myotis_lucifugus
ENSCPOG00000013995	TARBP1	99	76.467	ENSNLEG00000002518	TARBP1	99	76.529	Nomascus_leucogenys
ENSCPOG00000013995	TARBP1	67	71.277	ENSMEUG00000011370	-	67	71.277	Notamacropus_eugenii
ENSCPOG00000013995	TARBP1	72	78.383	ENSOPRG00000013822	TARBP1	70	78.415	Ochotona_princeps
ENSCPOG00000013995	TARBP1	100	85.804	ENSODEG00000005238	TARBP1	100	85.804	Octodon_degus
ENSCPOG00000013995	TARBP1	86	43.933	ENSONIG00000009789	si:dkey-85a20.4	99	44.694	Oreochromis_niloticus
ENSCPOG00000013995	TARBP1	99	76.747	ENSOCUG00000017418	TARBP1	99	76.994	Oryctolagus_cuniculus
ENSCPOG00000013995	TARBP1	99	40.098	ENSORLG00000010529	si:dkey-85a20.4	85	43.274	Oryzias_latipes
ENSCPOG00000013995	TARBP1	86	43.264	ENSORLG00020019264	si:dkey-85a20.4	85	43.193	Oryzias_latipes_hni
ENSCPOG00000013995	TARBP1	86	43.364	ENSORLG00015003276	si:dkey-85a20.4	85	43.222	Oryzias_latipes_hsok
ENSCPOG00000013995	TARBP1	99	74.583	ENSOGAG00000002379	TARBP1	99	73.840	Otolemur_garnettii
ENSCPOG00000013995	TARBP1	99	75.421	ENSOARG00000003434	TARBP1	99	75.279	Ovis_aries
ENSCPOG00000013995	TARBP1	85	79.133	ENSPPAG00000028097	TARBP1	99	79.206	Pan_paniscus
ENSCPOG00000013995	TARBP1	95	73.650	ENSPPRG00000013561	TARBP1	99	72.072	Panthera_pardus
ENSCPOG00000013995	TARBP1	84	77.546	ENSPTIG00000009281	TARBP1	99	77.703	Panthera_tigris_altaica
ENSCPOG00000013995	TARBP1	99	76.757	ENSPTRG00000002124	TARBP1	99	76.017	Pan_troglodytes
ENSCPOG00000013995	TARBP1	99	76.358	ENSPANG00000021933	TARBP1	99	75.802	Papio_anubis
ENSCPOG00000013995	TARBP1	99	43.165	ENSPKIG00000016716	si:dkey-85a20.4	85	46.972	Paramormyrops_kingsleyae
ENSCPOG00000013995	TARBP1	80	66.226	ENSPSIG00000010699	TARBP1	99	65.888	Pelodiscus_sinensis
ENSCPOG00000013995	TARBP1	99	77.048	ENSPEMG00000006888	Tarbp1	99	76.977	Peromyscus_maniculatus_bairdii
ENSCPOG00000013995	TARBP1	91	80.882	ENSPCIG00000029710	TARBP1	99	80.882	Phascolarctos_cinereus
ENSCPOG00000013995	TARBP1	86	43.688	ENSPFOG00000013020	si:dkey-85a20.4	99	43.617	Poecilia_formosa
ENSCPOG00000013995	TARBP1	99	40.893	ENSPLAG00000006044	si:dkey-85a20.4	85	43.737	Poecilia_latipinna
ENSCPOG00000013995	TARBP1	99	40.508	ENSPMEG00000017857	si:dkey-85a20.4	85	43.595	Poecilia_mexicana
ENSCPOG00000013995	TARBP1	86	44.076	ENSPREG00000022753	si:dkey-85a20.4	85	43.930	Poecilia_reticulata
ENSCPOG00000013995	TARBP1	91	77.577	ENSPPYG00000000102	TARBP1	99	77.486	Pongo_abelii
ENSCPOG00000013995	TARBP1	86	87.417	ENSPCAG00000004808	TARBP1	85	87.417	Procavia_capensis
ENSCPOG00000013995	TARBP1	99	73.964	ENSPCOG00000005666	TARBP1	99	74.583	Propithecus_coquereli
ENSCPOG00000013995	TARBP1	99	65.607	ENSPVAG00000014798	TARBP1	99	64.860	Pteropus_vampyrus
ENSCPOG00000013995	TARBP1	94	41.448	ENSPNYG00000019135	si:dkey-85a20.4	85	43.975	Pundamilia_nyererei
ENSCPOG00000013995	TARBP1	99	69.969	ENSRNOG00000053574	Tarbp1	99	68.903	Rattus_norvegicus
ENSCPOG00000013995	TARBP1	99	70.712	ENSRBIG00000043362	TARBP1	99	71.836	Rhinopithecus_bieti
ENSCPOG00000013995	TARBP1	99	72.943	ENSRROG00000029527	TARBP1	99	73.280	Rhinopithecus_roxellana
ENSCPOG00000013995	TARBP1	88	78.386	ENSSBOG00000034503	TARBP1	99	78.386	Saimiri_boliviensis_boliviensis
ENSCPOG00000013995	TARBP1	84	70.645	ENSSHAG00000000013	TARBP1	99	70.571	Sarcophilus_harrisii
ENSCPOG00000013995	TARBP1	85	45.238	ENSSFOG00015002660	si:dkey-85a20.4	97	46.148	Scleropages_formosus
ENSCPOG00000013995	TARBP1	92	44.162	ENSSMAG00000007081	si:dkey-85a20.4	83	46.154	Scophthalmus_maximus
ENSCPOG00000013995	TARBP1	92	42.004	ENSSDUG00000023566	si:dkey-85a20.4	85	43.843	Seriola_dumerili
ENSCPOG00000013995	TARBP1	86	44.811	ENSSLDG00000020200	si:dkey-85a20.4	84	45.878	Seriola_lalandi_dorsalis
ENSCPOG00000013995	TARBP1	89	76.443	ENSSARG00000012207	TARBP1	89	76.443	Sorex_araneus
ENSCPOG00000013995	TARBP1	99	59.394	ENSSPUG00000015364	TARBP1	99	59.186	Sphenodon_punctatus
ENSCPOG00000013995	TARBP1	85	45.617	ENSSPAG00000007213	si:dkey-85a20.4	85	45.270	Stegastes_partitus
ENSCPOG00000013995	TARBP1	99	75.832	ENSSSCG00000010160	TARBP1	99	75.968	Sus_scrofa
ENSCPOG00000013995	TARBP1	82	64.329	ENSTGUG00000010214	TARBP1	100	64.329	Taeniopygia_guttata
ENSCPOG00000013995	TARBP1	92	40.151	ENSTNIG00000016586	si:dkey-85a20.4	99	44.669	Tetraodon_nigroviridis
ENSCPOG00000013995	TARBP1	92	74.771	ENSTTRG00000008707	TARBP1	96	74.771	Tursiops_truncatus
ENSCPOG00000013995	TARBP1	83	78.733	ENSUMAG00000006730	TARBP1	99	78.238	Ursus_maritimus
ENSCPOG00000013995	TARBP1	80	82.000	ENSVPAG00000007665	TARBP1	87	82.000	Vicugna_pacos
ENSCPOG00000013995	TARBP1	86	78.874	ENSVVUG00000007460	TARBP1	99	78.445	Vulpes_vulpes
ENSCPOG00000013995	TARBP1	85	53.009	ENSXETG00000016224	tarbp1	99	53.009	Xenopus_tropicalis
ENSCPOG00000013995	TARBP1	79	48.087	ENSXCOG00000011779	si:dkey-85a20.4	94	48.224	Xiphophorus_couchianus
ENSCPOG00000013995	TARBP1	66	42.198	ENSXMAG00000009600	si:dkey-85a20.4	100	42.096	Xiphophorus_maculatus