EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPOG00000014025 (Gene tree)
Gene ID: 100719633
Gene Symbol: LSM7
Alias: YNL147W
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Minus strand
Length: 4542 bases
Position: chrDS563441.1:25154-29695
Accession: 100719633
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000014750	LSM	PF01423.22	3.2e-21	1	1
ENSCPOP00000012632	LSM	PF01423.22	3.4e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000028017	LSM7-201	425	-	ENSCPOP00000014750	101 (aa)	-	H0VVM4
ENSCPOT00000014167	LSM7-202	405	XM_013159229	ENSCPOP00000012632	103 (aa)	XP_013014683	H0VQ30

Gene Model

Click here to download ENSCPOG00000014025's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000014025's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPOG00000014025	LSM7	73	35.526	ENSCPOG00000035673	LSM8	73	35.526
ENSCPOG00000014025	LSM7	70	36.620	ENSCPOG00000036891	-	83	36.620

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000014025	LSM7	100	100.000	ENSG00000130332	LSM7	100	100.000	Homo_sapiens
ENSCPOG00000014025	LSM7	93	95.745	ENSAPOG00000015573	lsm7	81	95.745	Acanthochromis_polyacanthus
ENSCPOG00000014025	LSM7	100	99.010	ENSAMEG00000005484	LSM7	100	97.087	Ailuropoda_melanoleuca
ENSCPOG00000014025	LSM7	96	94.845	ENSACIG00000006498	lsm7	78	94.898	Amphilophus_citrinellus
ENSCPOG00000014025	LSM7	100	95.050	ENSAOCG00000001077	lsm7	92	95.050	Amphiprion_ocellaris
ENSCPOG00000014025	LSM7	100	95.146	ENSAPEG00000000694	lsm7	100	95.146	Amphiprion_percula
ENSCPOG00000014025	LSM7	100	95.050	ENSAPEG00000024447	lsm7	92	95.050	Amphiprion_percula
ENSCPOG00000014025	LSM7	100	95.146	ENSATEG00000008557	lsm7	100	95.146	Anabas_testudineus
ENSCPOG00000014025	LSM7	100	91.262	ENSANAG00000022222	-	100	91.262	Aotus_nancymaae
ENSCPOG00000014025	LSM7	100	100.000	ENSANAG00000037196	-	100	100.000	Aotus_nancymaae
ENSCPOG00000014025	LSM7	100	94.175	ENSACLG00000021021	lsm7	100	94.175	Astatotilapia_calliptera
ENSCPOG00000014025	LSM7	100	95.146	ENSAMXG00000037622	lsm7	100	95.146	Astyanax_mexicanus
ENSCPOG00000014025	LSM7	100	100.000	ENSBTAG00000004521	LSM7	100	100.000	Bos_taurus
ENSCPOG00000014025	LSM7	99	57.000	WBGene00003081	lsm-7	96	57.000	Caenorhabditis_elegans
ENSCPOG00000014025	LSM7	54	100.000	ENSCJAG00000039713	-	68	100.000	Callithrix_jacchus
ENSCPOG00000014025	LSM7	100	99.010	ENSCAFG00000019409	LSM7	98	99.010	Canis_familiaris
ENSCPOG00000014025	LSM7	100	99.010	ENSCAFG00020018168	LSM7	74	99.010	Canis_lupus_dingo
ENSCPOG00000014025	LSM7	100	100.000	ENSCHIG00000023663	LSM7	100	98.058	Capra_hircus
ENSCPOG00000014025	LSM7	70	100.000	ENSCAPG00000014534	LSM7	100	100.000	Cavia_aperea
ENSCPOG00000014025	LSM7	100	100.000	ENSCCAG00000035456	LSM7	99	100.000	Cebus_capucinus
ENSCPOG00000014025	LSM7	100	100.000	ENSCATG00000023543	LSM7	100	100.000	Cercocebus_atys
ENSCPOG00000014025	LSM7	100	100.000	ENSCLAG00000011635	LSM7	100	100.000	Chinchilla_lanigera
ENSCPOG00000014025	LSM7	100	100.000	ENSCSAG00000011599	LSM7	100	100.000	Chlorocebus_sabaeus
ENSCPOG00000014025	LSM7	71	94.444	ENSCPBG00000021317	LSM7	77	94.444	Chrysemys_picta_bellii
ENSCPOG00000014025	LSM7	95	80.208	ENSCING00000022134	-	97	80.208	Ciona_intestinalis
ENSCPOG00000014025	LSM7	100	100.000	ENSCANG00000035525	LSM7	100	100.000	Colobus_angolensis_palliatus
ENSCPOG00000014025	LSM7	100	99.029	ENSCGRG00001000807	-	100	99.029	Cricetulus_griseus_chok1gshd
ENSCPOG00000014025	LSM7	89	88.889	ENSCGRG00001016005	-	92	88.889	Cricetulus_griseus_chok1gshd
ENSCPOG00000014025	LSM7	89	88.889	ENSCGRG00000006821	-	92	88.889	Cricetulus_griseus_crigri
ENSCPOG00000014025	LSM7	100	99.010	ENSCGRG00000014355	-	97	99.010	Cricetulus_griseus_crigri
ENSCPOG00000014025	LSM7	100	95.050	ENSCSEG00000014900	lsm7	86	95.050	Cynoglossus_semilaevis
ENSCPOG00000014025	LSM7	100	96.040	ENSCVAG00000021091	lsm7	94	96.040	Cyprinodon_variegatus
ENSCPOG00000014025	LSM7	100	95.146	ENSDARG00000058328	lsm7	100	95.146	Danio_rerio
ENSCPOG00000014025	LSM7	100	98.020	ENSDORG00000024460	Lsm7	100	98.039	Dipodomys_ordii
ENSCPOG00000014025	LSM7	96	76.531	FBgn0261068	LSm7	89	76.531	Drosophila_melanogaster
ENSCPOG00000014025	LSM7	100	97.030	ENSETEG00000012788	LSM7	99	97.030	Echinops_telfairi
ENSCPOG00000014025	LSM7	82	59.036	ENSEBUG00000010470	-	79	59.036	Eptatretus_burgeri
ENSCPOG00000014025	LSM7	100	85.149	ENSEBUG00000016992	lsm7	99	84.466	Eptatretus_burgeri
ENSCPOG00000014025	LSM7	100	96.117	ENSECAG00000001440	LSM7	66	96.117	Equus_caballus
ENSCPOG00000014025	LSM7	100	99.029	ENSFCAG00000003445	LSM7	100	99.029	Felis_catus
ENSCPOG00000014025	LSM7	100	97.030	ENSFALG00000011912	LSM7	100	97.030	Ficedula_albicollis
ENSCPOG00000014025	LSM7	95	100.000	ENSFDAG00000007661	LSM7	100	100.000	Fukomys_damarensis
ENSCPOG00000014025	LSM7	100	96.040	ENSFHEG00000006349	lsm7	90	96.040	Fundulus_heteroclitus
ENSCPOG00000014025	LSM7	100	93.069	ENSGMOG00000013320	lsm7	100	91.262	Gadus_morhua
ENSCPOG00000014025	LSM7	100	96.117	ENSGAFG00000013902	lsm7	100	96.117	Gambusia_affinis
ENSCPOG00000014025	LSM7	100	94.059	ENSGACG00000010390	lsm7	100	92.233	Gasterosteus_aculeatus
ENSCPOG00000014025	LSM7	100	100.000	ENSGGOG00000010172	LSM7	100	100.000	Gorilla_gorilla
ENSCPOG00000014025	LSM7	100	94.175	ENSHBUG00000004616	lsm7	100	94.175	Haplochromis_burtoni
ENSCPOG00000014025	LSM7	100	100.000	ENSHGLG00000010587	LSM7	100	100.000	Heterocephalus_glaber_female
ENSCPOG00000014025	LSM7	100	100.000	ENSHGLG00100000852	LSM7	100	100.000	Heterocephalus_glaber_male
ENSCPOG00000014025	LSM7	100	94.059	ENSHCOG00000020252	lsm7	100	94.059	Hippocampus_comes
ENSCPOG00000014025	LSM7	100	95.146	ENSIPUG00000024724	lsm7	100	95.146	Ictalurus_punctatus
ENSCPOG00000014025	LSM7	100	100.000	ENSSTOG00000028372	LSM7	99	100.000	Ictidomys_tridecemlineatus
ENSCPOG00000014025	LSM7	100	98.020	ENSJJAG00000001936	Lsm7	98	98.020	Jaculus_jaculus
ENSCPOG00000014025	LSM7	100	96.117	ENSKMAG00000022151	lsm7	100	96.117	Kryptolebias_marmoratus
ENSCPOG00000014025	LSM7	100	95.050	ENSLBEG00000005203	lsm7	100	94.175	Labrus_bergylta
ENSCPOG00000014025	LSM7	100	99.010	ENSLACG00000015700	LSM7	100	97.087	Latimeria_chalumnae
ENSCPOG00000014025	LSM7	100	98.020	ENSLOCG00000004356	lsm7	100	96.117	Lepisosteus_oculatus
ENSCPOG00000014025	LSM7	100	100.000	ENSLAFG00000029302	LSM7	98	100.000	Loxodonta_africana
ENSCPOG00000014025	LSM7	100	100.000	ENSMFAG00000044572	LSM7	100	100.000	Macaca_fascicularis
ENSCPOG00000014025	LSM7	100	100.000	ENSMMUG00000000452	LSM7	100	100.000	Macaca_mulatta
ENSCPOG00000014025	LSM7	100	100.000	ENSMNEG00000004393	LSM7	100	100.000	Macaca_nemestrina
ENSCPOG00000014025	LSM7	100	100.000	ENSMLEG00000030852	LSM7	100	100.000	Mandrillus_leucophaeus
ENSCPOG00000014025	LSM7	100	94.175	ENSMAMG00000005410	lsm7	100	94.175	Mastacembelus_armatus
ENSCPOG00000014025	LSM7	100	94.175	ENSMZEG00005028055	lsm7	100	94.175	Maylandia_zebra
ENSCPOG00000014025	LSM7	100	98.058	ENSMGAG00000000750	LSM7	89	98.058	Meleagris_gallopavo
ENSCPOG00000014025	LSM7	100	99.029	ENSMAUG00000009276	Lsm7	100	99.029	Mesocricetus_auratus
ENSCPOG00000014025	LSM7	100	100.000	ENSMICG00000009988	-	100	99.029	Microcebus_murinus
ENSCPOG00000014025	LSM7	100	100.000	ENSMICG00000028619	-	100	100.000	Microcebus_murinus
ENSCPOG00000014025	LSM7	100	99.029	ENSMOCG00000016925	Lsm7	100	99.029	Microtus_ochrogaster
ENSCPOG00000014025	LSM7	100	95.146	ENSMMOG00000019645	lsm7	98	95.146	Mola_mola
ENSCPOG00000014025	LSM7	100	99.029	ENSMODG00000004722	LSM7	100	99.029	Monodelphis_domestica
ENSCPOG00000014025	LSM7	100	94.175	ENSMALG00000014511	lsm7	79	94.175	Monopterus_albus
ENSCPOG00000014025	LSM7	100	97.087	MGP_CAROLIEiJ_G0015607	Lsm7	100	97.087	Mus_caroli
ENSCPOG00000014025	LSM7	100	97.087	ENSMUSG00000035215	Lsm7	100	97.087	Mus_musculus
ENSCPOG00000014025	LSM7	100	97.087	MGP_PahariEiJ_G0031020	Lsm7	100	97.087	Mus_pahari
ENSCPOG00000014025	LSM7	100	97.087	MGP_SPRETEiJ_G0016425	Lsm7	100	97.087	Mus_spretus
ENSCPOG00000014025	LSM7	100	92.233	ENSMLUG00000024002	-	94	92.233	Myotis_lucifugus
ENSCPOG00000014025	LSM7	100	99.010	ENSMLUG00000013097	-	100	97.087	Myotis_lucifugus
ENSCPOG00000014025	LSM7	100	98.058	ENSNGAG00000021637	Lsm7	100	98.058	Nannospalax_galili
ENSCPOG00000014025	LSM7	93	94.681	ENSNBRG00000001237	-	81	94.059	Neolamprologus_brichardi
ENSCPOG00000014025	LSM7	100	94.059	ENSNBRG00000015770	lsm7	87	94.059	Neolamprologus_brichardi
ENSCPOG00000014025	LSM7	100	100.000	ENSNLEG00000002265	LSM7	100	100.000	Nomascus_leucogenys
ENSCPOG00000014025	LSM7	100	93.204	ENSODEG00000018769	-	100	93.204	Octodon_degus
ENSCPOG00000014025	LSM7	100	79.612	ENSODEG00000008190	-	100	79.612	Octodon_degus
ENSCPOG00000014025	LSM7	100	100.000	ENSODEG00000013590	-	100	100.000	Octodon_degus
ENSCPOG00000014025	LSM7	100	94.175	ENSONIG00000001801	lsm7	89	94.175	Oreochromis_niloticus
ENSCPOG00000014025	LSM7	100	95.146	ENSORLG00000023951	lsm7	100	95.146	Oryzias_latipes
ENSCPOG00000014025	LSM7	100	95.146	ENSORLG00020022226	lsm7	100	95.146	Oryzias_latipes_hni
ENSCPOG00000014025	LSM7	100	95.050	ENSORLG00015020044	lsm7	94	95.050	Oryzias_latipes_hsok
ENSCPOG00000014025	LSM7	100	95.146	ENSOMEG00000012806	lsm7	100	95.146	Oryzias_melastigma
ENSCPOG00000014025	LSM7	100	98.020	ENSOGAG00000000144	-	99	98.020	Otolemur_garnettii
ENSCPOG00000014025	LSM7	100	88.350	ENSOGAG00000024373	-	100	88.350	Otolemur_garnettii
ENSCPOG00000014025	LSM7	100	100.000	ENSOARG00000014013	LSM7	100	98.058	Ovis_aries
ENSCPOG00000014025	LSM7	100	100.000	ENSPPAG00000026500	LSM7	100	100.000	Pan_paniscus
ENSCPOG00000014025	LSM7	100	99.029	ENSPPRG00000008624	LSM7	100	99.029	Panthera_pardus
ENSCPOG00000014025	LSM7	100	99.010	ENSPTIG00000016252	LSM7	98	99.010	Panthera_tigris_altaica
ENSCPOG00000014025	LSM7	100	100.000	ENSPTRG00000010233	LSM7	100	100.000	Pan_troglodytes
ENSCPOG00000014025	LSM7	100	100.000	ENSPANG00000020668	LSM7	100	100.000	Papio_anubis
ENSCPOG00000014025	LSM7	100	97.087	ENSPKIG00000011325	lsm7	100	97.087	Paramormyrops_kingsleyae
ENSCPOG00000014025	LSM7	100	98.020	ENSPSIG00000017149	LSM7	89	98.020	Pelodiscus_sinensis
ENSCPOG00000014025	LSM7	100	95.146	ENSPMGG00000006498	lsm7	100	95.146	Periophthalmus_magnuspinnatus
ENSCPOG00000014025	LSM7	100	99.029	ENSPCIG00000030454	LSM7	100	99.029	Phascolarctos_cinereus
ENSCPOG00000014025	LSM7	100	95.050	ENSPFOG00000012467	lsm7	91	93.204	Poecilia_formosa
ENSCPOG00000014025	LSM7	100	95.050	ENSPLAG00000000252	lsm7	94	95.050	Poecilia_latipinna
ENSCPOG00000014025	LSM7	100	95.050	ENSPMEG00000000587	lsm7	94	95.050	Poecilia_mexicana
ENSCPOG00000014025	LSM7	78	76.543	ENSPREG00000016718	lsm7	65	76.543	Poecilia_reticulata
ENSCPOG00000014025	LSM7	72	97.260	ENSPPYG00000009348	-	50	97.260	Pongo_abelii
ENSCPOG00000014025	LSM7	100	100.000	ENSPCOG00000017177	LSM7	100	100.000	Propithecus_coquereli
ENSCPOG00000014025	LSM7	100	94.175	ENSPNYG00000006938	lsm7	100	94.175	Pundamilia_nyererei
ENSCPOG00000014025	LSM7	100	95.146	ENSPNAG00000010141	lsm7	100	95.146	Pygocentrus_nattereri
ENSCPOG00000014025	LSM7	100	98.058	ENSRNOG00000019552	Lsm7	100	98.058	Rattus_norvegicus
ENSCPOG00000014025	LSM7	100	100.000	ENSRBIG00000035978	LSM7	100	100.000	Rhinopithecus_bieti
ENSCPOG00000014025	LSM7	100	100.000	ENSRROG00000034044	LSM7	100	100.000	Rhinopithecus_roxellana
ENSCPOG00000014025	LSM7	88	47.826	YNL147W	-	80	47.826	Saccharomyces_cerevisiae
ENSCPOG00000014025	LSM7	100	100.000	ENSSBOG00000034899	LSM7	100	100.000	Saimiri_boliviensis_boliviensis
ENSCPOG00000014025	LSM7	100	95.146	ENSSFOG00015006728	lsm7	100	95.146	Scleropages_formosus
ENSCPOG00000014025	LSM7	100	95.050	ENSSMAG00000004195	lsm7	93	95.050	Scophthalmus_maximus
ENSCPOG00000014025	LSM7	100	95.146	ENSSDUG00000001863	lsm7	100	95.146	Seriola_dumerili
ENSCPOG00000014025	LSM7	100	95.146	ENSSLDG00000016339	lsm7	100	95.146	Seriola_lalandi_dorsalis
ENSCPOG00000014025	LSM7	100	95.146	ENSSPAG00000015221	lsm7	100	95.146	Stegastes_partitus
ENSCPOG00000014025	LSM7	100	100.000	ENSSSCG00000013463	LSM7	99	100.000	Sus_scrofa
ENSCPOG00000014025	LSM7	100	97.030	ENSTGUG00000000067	LSM7	100	97.030	Taeniopygia_guttata
ENSCPOG00000014025	LSM7	100	95.146	ENSTRUG00000022913	lsm7	100	95.146	Takifugu_rubripes
ENSCPOG00000014025	LSM7	100	95.146	ENSTNIG00000015525	lsm7	100	95.146	Tetraodon_nigroviridis
ENSCPOG00000014025	LSM7	69	87.143	ENSTBEG00000016602	LSM7	100	87.143	Tupaia_belangeri
ENSCPOG00000014025	LSM7	100	99.010	ENSUAMG00000000912	LSM7	86	97.087	Ursus_americanus
ENSCPOG00000014025	LSM7	100	99.010	ENSUMAG00000006556	LSM7	79	99.010	Ursus_maritimus
ENSCPOG00000014025	LSM7	70	98.592	ENSVVUG00000002640	LSM7	65	98.592	Vulpes_vulpes
ENSCPOG00000014025	LSM7	100	95.050	ENSXETG00000022166	lsm7	100	95.050	Xenopus_tropicalis
ENSCPOG00000014025	LSM7	100	96.040	ENSXCOG00000002572	lsm7	100	95.098	Xiphophorus_couchianus
ENSCPOG00000014025	LSM7	100	96.117	ENSXMAG00000018630	lsm7	100	96.117	Xiphophorus_maculatus