EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPOG00000014100 (Gene tree)
Gene ID: 100717472
Gene Symbol: RBM47
Alias: FLJ20273|NET18
Full Name: RNA binding motif protein 47
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Minus strand
Length: 158795 bases
Position: chrDS562879.1:14677634-14836428
Accession: 100717472
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000014320	RRM_1	PF00076.22	3.6e-38	1	3
ENSCPOP00000014320	RRM_1	PF00076.22	3.6e-38	2	3
ENSCPOP00000014320	RRM_1	PF00076.22	3.6e-38	3	3
ENSCPOP00000021538	RRM_1	PF00076.22	5.7e-38	1	3
ENSCPOP00000021538	RRM_1	PF00076.22	5.7e-38	2	3
ENSCPOP00000021538	RRM_1	PF00076.22	5.7e-38	3	3
ENSCPOP00000023329	RRM_1	PF00076.22	5.7e-38	1	3
ENSCPOP00000023329	RRM_1	PF00076.22	5.7e-38	2	3
ENSCPOP00000023329	RRM_1	PF00076.22	5.7e-38	3	3
ENSCPOP00000026756	RRM_1	PF00076.22	5.7e-38	1	3
ENSCPOP00000026756	RRM_1	PF00076.22	5.7e-38	2	3
ENSCPOP00000026756	RRM_1	PF00076.22	5.7e-38	3	3
ENSCPOP00000028527	RRM_1	PF00076.22	5.7e-38	1	3
ENSCPOP00000028527	RRM_1	PF00076.22	5.7e-38	2	3
ENSCPOP00000028527	RRM_1	PF00076.22	5.7e-38	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000042423	RBM47-202	5247	XM_013154450	ENSCPOP00000028527	592 (aa)	XP_013009904	A0A286XTB8
ENSCPOT00000014242	RBM47-205	1572	-	ENSCPOP00000014320	523 (aa)	-	H0VUE7
ENSCPOT00000030905	RBM47-201	5222	-	ENSCPOP00000026756	592 (aa)	-	A0A286XTB8
ENSCPOT00000031772	RBM47-203	5068	XM_013154452	ENSCPOP00000023329	592 (aa)	XP_013009906	A0A286XTB8
ENSCPOT00000033428	RBM47-204	4560	XM_003471632	ENSCPOP00000021538	592 (aa)	XP_003471680	A0A286XTB8

Gene Model

Click here to download ENSCPOG00000014100's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000014100's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPOG00000014100	RBM47	57	55.150	ENSCPOG00000012415	SYNCRIP	79	46.532
ENSCPOG00000014100	RBM47	57	73.000	ENSCPOG00000010284	-	64	73.000
ENSCPOG00000014100	RBM47	66	68.391	ENSCPOG00000009807	A1CF	75	58.553
ENSCPOG00000014100	RBM47	60	70.794	ENSCPOG00000020396	-	63	70.794
ENSCPOG00000014100	RBM47	59	56.129	ENSCPOG00000040556	HNRNPR	71	46.053
ENSCPOG00000014100	RBM47	57	71.667	ENSCPOG00000019272	-	56	71.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000014100	RBM47	100	94.118	ENSG00000163694	RBM47	100	97.696	Homo_sapiens
ENSCPOG00000014100	RBM47	100	77.926	ENSAPOG00000011062	rbm47	100	82.667	Acanthochromis_polyacanthus
ENSCPOG00000014100	RBM47	100	97.067	ENSAMEG00000009672	RBM47	100	93.970	Ailuropoda_melanoleuca
ENSCPOG00000014100	RBM47	100	77.852	ENSACIG00000011531	rbm47	100	83.200	Amphilophus_citrinellus
ENSCPOG00000014100	RBM47	100	78.020	ENSAOCG00000022245	rbm47	100	82.667	Amphiprion_ocellaris
ENSCPOG00000014100	RBM47	100	77.685	ENSAPEG00000018304	rbm47	100	82.667	Amphiprion_percula
ENSCPOG00000014100	RBM47	100	77.213	ENSATEG00000018400	rbm47	100	80.563	Anabas_testudineus
ENSCPOG00000014100	RBM47	100	87.037	ENSAPLG00000013974	RBM47	100	86.869	Anas_platyrhynchos
ENSCPOG00000014100	RBM47	100	84.975	ENSACAG00000011833	RBM47	100	84.975	Anolis_carolinensis
ENSCPOG00000014100	RBM47	100	94.286	ENSANAG00000029440	RBM47	100	96.267	Aotus_nancymaae
ENSCPOG00000014100	RBM47	100	82.687	ENSACLG00000016902	rbm47	100	81.654	Astatotilapia_calliptera
ENSCPOG00000014100	RBM47	100	74.715	ENSAMXG00000021794	rbm47	100	79.744	Astyanax_mexicanus
ENSCPOG00000014100	RBM47	100	96.627	ENSBTAG00000002356	RBM47	100	96.627	Bos_taurus
ENSCPOG00000014100	RBM47	100	93.960	ENSCJAG00000019385	RBM47	100	96.000	Callithrix_jacchus
ENSCPOG00000014100	RBM47	96	94.035	ENSCAFG00000015898	RBM47	100	92.593	Canis_familiaris
ENSCPOG00000014100	RBM47	83	96.122	ENSCAFG00020010558	RBM47	94	94.118	Canis_lupus_dingo
ENSCPOG00000014100	RBM47	100	96.965	ENSCHIG00000026214	RBM47	100	96.965	Capra_hircus
ENSCPOG00000014100	RBM47	86	79.020	ENSTSYG00000033612	RBM47	92	90.265	Carlito_syrichta
ENSCPOG00000014100	RBM47	100	100.000	ENSCAPG00000008426	RBM47	100	100.000	Cavia_aperea
ENSCPOG00000014100	RBM47	99	66.050	ENSCCAG00000024397	-	99	65.210	Cebus_capucinus
ENSCPOG00000014100	RBM47	100	96.533	ENSCCAG00000030129	-	100	96.533	Cebus_capucinus
ENSCPOG00000014100	RBM47	100	95.270	ENSCATG00000042064	RBM47	100	97.067	Cercocebus_atys
ENSCPOG00000014100	RBM47	100	98.400	ENSCLAG00000001684	RBM47	100	98.400	Chinchilla_lanigera
ENSCPOG00000014100	RBM47	100	94.286	ENSCSAG00000017060	RBM47	100	94.286	Chlorocebus_sabaeus
ENSCPOG00000014100	RBM47	81	96.512	ENSCHOG00000011731	RBM47	88	89.414	Choloepus_hoffmanni
ENSCPOG00000014100	RBM47	100	91.755	ENSCPBG00000013831	RBM47	100	88.610	Chrysemys_picta_bellii
ENSCPOG00000014100	RBM47	100	95.270	ENSCANG00000019997	RBM47	100	97.067	Colobus_angolensis_palliatus
ENSCPOG00000014100	RBM47	100	87.643	ENSCGRG00001020102	-	100	89.683	Cricetulus_griseus_chok1gshd
ENSCPOG00000014100	RBM47	100	93.915	ENSCGRG00001000623	-	100	94.415	Cricetulus_griseus_chok1gshd
ENSCPOG00000014100	RBM47	100	87.262	ENSCGRG00000014760	-	100	89.153	Cricetulus_griseus_crigri
ENSCPOG00000014100	RBM47	100	93.386	ENSCGRG00000007762	-	100	94.937	Cricetulus_griseus_crigri
ENSCPOG00000014100	RBM47	100	75.920	ENSCSEG00000004545	rbm47	100	75.084	Cynoglossus_semilaevis
ENSCPOG00000014100	RBM47	96	84.746	ENSCVAG00000020144	rbm47	100	79.540	Cyprinodon_variegatus
ENSCPOG00000014100	RBM47	100	76.759	ENSDARG00000061985	rbm47	100	75.777	Danio_rerio
ENSCPOG00000014100	RBM47	100	92.074	ENSDNOG00000046854	RBM47	100	93.086	Dasypus_novemcinctus
ENSCPOG00000014100	RBM47	100	93.980	ENSDORG00000010144	Rbm47	100	93.311	Dipodomys_ordii
ENSCPOG00000014100	RBM47	100	93.635	ENSETEG00000009194	RBM47	100	93.300	Echinops_telfairi
ENSCPOG00000014100	RBM47	99	57.616	ENSEBUG00000011912	rbm47	100	70.745	Eptatretus_burgeri
ENSCPOG00000014100	RBM47	100	96.627	ENSEASG00005008443	RBM47	100	96.627	Equus_asinus_asinus
ENSCPOG00000014100	RBM47	100	96.627	ENSECAG00000004400	RBM47	100	96.627	Equus_caballus
ENSCPOG00000014100	RBM47	75	94.805	ENSEEUG00000001194	RBM47	75	96.104	Erinaceus_europaeus
ENSCPOG00000014100	RBM47	100	81.266	ENSELUG00000006148	rbm47	100	80.353	Esox_lucius
ENSCPOG00000014100	RBM47	100	96.791	ENSFCAG00000012399	RBM47	100	96.791	Felis_catus
ENSCPOG00000014100	RBM47	100	90.957	ENSFALG00000002861	RBM47	100	88.591	Ficedula_albicollis
ENSCPOG00000014100	RBM47	100	95.200	ENSFDAG00000016326	RBM47	100	95.200	Fukomys_damarensis
ENSCPOG00000014100	RBM47	100	76.510	ENSFHEG00000007938	rbm47	100	75.503	Fundulus_heteroclitus
ENSCPOG00000014100	RBM47	100	81.013	ENSGMOG00000014802	rbm47	100	73.377	Gadus_morhua
ENSCPOG00000014100	RBM47	72	90.957	ENSGALG00000014267	RBM47	99	90.957	Gallus_gallus
ENSCPOG00000014100	RBM47	72	82.933	ENSGAFG00000020571	rbm47	98	81.600	Gambusia_affinis
ENSCPOG00000014100	RBM47	100	75.000	ENSGACG00000016223	rbm47	100	79.284	Gasterosteus_aculeatus
ENSCPOG00000014100	RBM47	100	91.755	ENSGAGG00000020051	RBM47	100	88.777	Gopherus_agassizii
ENSCPOG00000014100	RBM47	100	95.270	ENSGGOG00000001367	RBM47	100	97.067	Gorilla_gorilla
ENSCPOG00000014100	RBM47	100	82.687	ENSHBUG00000003520	rbm47	100	81.654	Haplochromis_burtoni
ENSCPOG00000014100	RBM47	100	76.099	ENSHGLG00000016914	RBM47	100	96.835	Heterocephalus_glaber_female
ENSCPOG00000014100	RBM47	100	85.135	ENSHGLG00100003071	-	100	84.966	Heterocephalus_glaber_male
ENSCPOG00000014100	RBM47	100	95.946	ENSHGLG00100014028	-	100	96.835	Heterocephalus_glaber_male
ENSCPOG00000014100	RBM47	99	77.387	ENSHCOG00000002074	rbm47	99	82.058	Hippocampus_comes
ENSCPOG00000014100	RBM47	100	80.620	ENSIPUG00000004743	rbm47	100	80.800	Ictalurus_punctatus
ENSCPOG00000014100	RBM47	100	96.533	ENSSTOG00000004727	RBM47	100	96.533	Ictidomys_tridecemlineatus
ENSCPOG00000014100	RBM47	100	93.899	ENSJJAG00000013823	Rbm47	100	92.965	Jaculus_jaculus
ENSCPOG00000014100	RBM47	100	78.500	ENSKMAG00000000084	rbm47	100	79.389	Kryptolebias_marmoratus
ENSCPOG00000014100	RBM47	100	79.540	ENSLBEG00000008436	rbm47	100	78.772	Labrus_bergylta
ENSCPOG00000014100	RBM47	100	87.798	ENSLACG00000007196	RBM47	100	84.370	Latimeria_chalumnae
ENSCPOG00000014100	RBM47	100	81.176	ENSLOCG00000012966	rbm47	95	80.168	Lepisosteus_oculatus
ENSCPOG00000014100	RBM47	100	95.467	ENSLAFG00000011998	RBM47	100	92.941	Loxodonta_africana
ENSCPOG00000014100	RBM47	100	95.270	ENSMFAG00000037967	RBM47	100	97.067	Macaca_fascicularis
ENSCPOG00000014100	RBM47	100	94.286	ENSMMUG00000012036	RBM47	100	97.409	Macaca_mulatta
ENSCPOG00000014100	RBM47	100	95.270	ENSMNEG00000040774	RBM47	100	97.067	Macaca_nemestrina
ENSCPOG00000014100	RBM47	100	97.778	ENSMLEG00000041432	RBM47	100	97.778	Mandrillus_leucophaeus
ENSCPOG00000014100	RBM47	100	76.623	ENSMAMG00000019143	rbm47	100	81.186	Mastacembelus_armatus
ENSCPOG00000014100	RBM47	100	82.687	ENSMZEG00005023659	rbm47	100	81.234	Maylandia_zebra
ENSCPOG00000014100	RBM47	100	91.223	ENSMGAG00000012226	RBM47	100	88.462	Meleagris_gallopavo
ENSCPOG00000014100	RBM47	100	92.114	ENSMAUG00000006493	Rbm47	100	94.937	Mesocricetus_auratus
ENSCPOG00000014100	RBM47	100	88.851	ENSMICG00000026417	RBM47	100	90.667	Microcebus_murinus
ENSCPOG00000014100	RBM47	100	92.605	ENSMOCG00000021170	Rbm47	100	95.570	Microtus_ochrogaster
ENSCPOG00000014100	RBM47	100	76.393	ENSMMOG00000007260	rbm47	100	80.000	Mola_mola
ENSCPOG00000014100	RBM47	60	80.442	ENSMODG00000015426	-	99	77.918	Monodelphis_domestica
ENSCPOG00000014100	RBM47	100	91.467	ENSMODG00000007003	RBM47	100	89.207	Monodelphis_domestica
ENSCPOG00000014100	RBM47	100	81.266	ENSMODG00000020561	-	100	79.730	Monodelphis_domestica
ENSCPOG00000014100	RBM47	100	76.461	ENSMALG00000005167	rbm47	100	82.586	Monopterus_albus
ENSCPOG00000014100	RBM47	100	93.651	MGP_CAROLIEiJ_G0027258	Rbm47	100	94.149	Mus_caroli
ENSCPOG00000014100	RBM47	100	93.915	ENSMUSG00000070780	Rbm47	100	94.415	Mus_musculus
ENSCPOG00000014100	RBM47	100	93.915	MGP_PahariEiJ_G0017040	Rbm47	100	94.415	Mus_pahari
ENSCPOG00000014100	RBM47	100	93.915	MGP_SPRETEiJ_G0028253	Rbm47	100	94.415	Mus_spretus
ENSCPOG00000014100	RBM47	100	97.867	ENSMPUG00000006177	RBM47	94	96.465	Mustela_putorius_furo
ENSCPOG00000014100	RBM47	100	94.430	ENSMLUG00000000889	RBM47	100	92.088	Myotis_lucifugus
ENSCPOG00000014100	RBM47	100	94.681	ENSNGAG00000003325	Rbm47	100	92.450	Nannospalax_galili
ENSCPOG00000014100	RBM47	100	82.946	ENSNBRG00000015092	rbm47	100	81.491	Neolamprologus_brichardi
ENSCPOG00000014100	RBM47	100	93.950	ENSNLEG00000017151	RBM47	100	97.067	Nomascus_leucogenys
ENSCPOG00000014100	RBM47	69	92.500	ENSMEUG00000009516	-	100	86.480	Notamacropus_eugenii
ENSCPOG00000014100	RBM47	85	97.095	ENSOPRG00000016507	-	75	97.095	Ochotona_princeps
ENSCPOG00000014100	RBM47	100	97.867	ENSODEG00000004873	RBM47	100	97.804	Octodon_degus
ENSCPOG00000014100	RBM47	100	81.538	ENSONIG00000009061	rbm47	100	80.357	Oreochromis_niloticus
ENSCPOG00000014100	RBM47	100	85.810	ENSOANG00000008978	RBM47	100	86.311	Ornithorhynchus_anatinus
ENSCPOG00000014100	RBM47	100	95.953	ENSOCUG00000012034	RBM47	100	95.953	Oryctolagus_cuniculus
ENSCPOG00000014100	RBM47	100	81.748	ENSORLG00000005847	rbm47	100	82.540	Oryzias_latipes
ENSCPOG00000014100	RBM47	100	81.748	ENSORLG00020005154	rbm47	100	82.540	Oryzias_latipes_hni
ENSCPOG00000014100	RBM47	100	84.574	ENSORLG00015000066	rbm47	100	82.804	Oryzias_latipes_hsok
ENSCPOG00000014100	RBM47	100	84.533	ENSOMEG00000010730	rbm47	100	83.467	Oryzias_melastigma
ENSCPOG00000014100	RBM47	100	88.267	ENSOGAG00000025193	-	100	85.980	Otolemur_garnettii
ENSCPOG00000014100	RBM47	100	95.960	ENSOGAG00000029367	-	100	95.960	Otolemur_garnettii
ENSCPOG00000014100	RBM47	100	88.196	ENSOARG00000012711	RBM47	100	88.196	Ovis_aries
ENSCPOG00000014100	RBM47	100	94.118	ENSPPAG00000029763	RBM47	100	94.118	Pan_paniscus
ENSCPOG00000014100	RBM47	100	93.750	ENSPPRG00000012873	RBM47	100	97.333	Panthera_pardus
ENSCPOG00000014100	RBM47	85	92.843	ENSPTIG00000017046	RBM47	100	92.843	Panthera_tigris_altaica
ENSCPOG00000014100	RBM47	100	95.270	ENSPTRG00000016006	RBM47	100	97.067	Pan_troglodytes
ENSCPOG00000014100	RBM47	100	95.270	ENSPANG00000005980	RBM47	100	97.067	Papio_anubis
ENSCPOG00000014100	RBM47	96	85.876	ENSPKIG00000005037	rbm47	100	80.879	Paramormyrops_kingsleyae
ENSCPOG00000014100	RBM47	100	75.926	ENSPKIG00000013431	RBM47	98	81.347	Paramormyrops_kingsleyae
ENSCPOG00000014100	RBM47	88	92.021	ENSPSIG00000017516	RBM47	97	89.981	Pelodiscus_sinensis
ENSCPOG00000014100	RBM47	100	76.846	ENSPMGG00000018540	rbm47	100	82.228	Periophthalmus_magnuspinnatus
ENSCPOG00000014100	RBM47	100	94.180	ENSPEMG00000011088	Rbm47	100	94.681	Peromyscus_maniculatus_bairdii
ENSCPOG00000014100	RBM47	100	79.648	ENSPFOG00000007997	rbm47	100	78.426	Poecilia_formosa
ENSCPOG00000014100	RBM47	100	79.397	ENSPLAG00000002072	rbm47	100	81.333	Poecilia_latipinna
ENSCPOG00000014100	RBM47	100	82.933	ENSPMEG00000017492	rbm47	100	81.333	Poecilia_mexicana
ENSCPOG00000014100	RBM47	100	80.818	ENSPREG00000008456	rbm47	100	81.600	Poecilia_reticulata
ENSCPOG00000014100	RBM47	98	83.424	ENSPPYG00000014688	RBM47	100	80.880	Pongo_abelii
ENSCPOG00000014100	RBM47	88	95.288	ENSPCAG00000011879	RBM47	81	96.250	Procavia_capensis
ENSCPOG00000014100	RBM47	100	91.554	ENSPCOG00000023451	RBM47	100	93.067	Propithecus_coquereli
ENSCPOG00000014100	RBM47	100	92.605	ENSPVAG00000003812	RBM47	100	93.445	Pteropus_vampyrus
ENSCPOG00000014100	RBM47	100	82.687	ENSPNYG00000022868	rbm47	100	81.234	Pundamilia_nyererei
ENSCPOG00000014100	RBM47	100	75.286	ENSPNAG00000007940	rbm47	100	80.256	Pygocentrus_nattereri
ENSCPOG00000014100	RBM47	100	94.180	ENSRNOG00000002408	Rbm47	100	92.593	Rattus_norvegicus
ENSCPOG00000014100	RBM47	100	95.630	ENSRBIG00000039601	RBM47	100	97.333	Rhinopithecus_bieti
ENSCPOG00000014100	RBM47	100	95.630	ENSRROG00000044696	RBM47	100	97.333	Rhinopithecus_roxellana
ENSCPOG00000014100	RBM47	100	90.709	ENSSBOG00000028475	RBM47	100	95.455	Saimiri_boliviensis_boliviensis
ENSCPOG00000014100	RBM47	100	91.733	ENSSHAG00000017576	RBM47	100	90.203	Sarcophilus_harrisii
ENSCPOG00000014100	RBM47	100	73.267	ENSSFOG00015012445	rbm47	100	77.887	Scleropages_formosus
ENSCPOG00000014100	RBM47	100	75.251	ENSSFOG00015024101	RBM47	100	79.841	Scleropages_formosus
ENSCPOG00000014100	RBM47	100	74.959	ENSSMAG00000009744	rbm47	100	78.920	Scophthalmus_maximus
ENSCPOG00000014100	RBM47	100	78.188	ENSSDUG00000022684	rbm47	100	82.228	Seriola_dumerili
ENSCPOG00000014100	RBM47	100	78.020	ENSSLDG00000003109	rbm47	100	82.228	Seriola_lalandi_dorsalis
ENSCPOG00000014100	RBM47	85	95.759	ENSSARG00000001735	RBM47	84	95.759	Sorex_araneus
ENSCPOG00000014100	RBM47	100	86.050	ENSSPUG00000007515	RBM47	100	89.067	Sphenodon_punctatus
ENSCPOG00000014100	RBM47	100	78.523	ENSSPAG00000001257	rbm47	100	83.024	Stegastes_partitus
ENSCPOG00000014100	RBM47	100	96.290	ENSSSCG00000008796	RBM47	100	96.290	Sus_scrofa
ENSCPOG00000014100	RBM47	100	90.957	ENSTGUG00000008705	RBM47	100	88.739	Taeniopygia_guttata
ENSCPOG00000014100	RBM47	100	76.174	ENSTRUG00000014050	rbm47	100	82.400	Takifugu_rubripes
ENSCPOG00000014100	RBM47	100	76.026	ENSTNIG00000006127	rbm47	100	75.205	Tetraodon_nigroviridis
ENSCPOG00000014100	RBM47	87	91.200	ENSTBEG00000001607	RBM47	76	91.467	Tupaia_belangeri
ENSCPOG00000014100	RBM47	100	95.616	ENSTTRG00000002839	RBM47	100	95.616	Tursiops_truncatus
ENSCPOG00000014100	RBM47	100	97.333	ENSUAMG00000021346	RBM47	100	95.960	Ursus_americanus
ENSCPOG00000014100	RBM47	57	96.575	ENSVPAG00000000641	-	57	96.575	Vicugna_pacos
ENSCPOG00000014100	RBM47	96	94.035	ENSVVUG00000014774	RBM47	100	92.256	Vulpes_vulpes
ENSCPOG00000014100	RBM47	100	87.566	ENSXETG00000012802	rbm47	100	84.370	Xenopus_tropicalis
ENSCPOG00000014100	RBM47	100	76.426	ENSXCOG00000000780	rbm47	100	81.333	Xiphophorus_couchianus
ENSCPOG00000014100	RBM47	100	82.667	ENSXMAG00000009874	rbm47	100	80.902	Xiphophorus_maculatus