EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCPOG00000014325 (Gene tree)
Gene ID: 100720438
Gene Symbol: USB1
Alias: C16orf57|FLJ13154|HVSL1|Mpn1
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Minus strand
Length: 11548 bases
Position: chrDS562877.1:24162068-24173615
Accession: 100720438
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000012903	HVSL	PF09749.9	4.2e-63	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000014467	USB1-201	1514	XM_003472057	ENSCPOP00000012903	266 (aa)	XP_003472105	H0VQR9

Gene Model

Click here to download ENSCPOG00000014325's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000014325's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000014325	USB1	100	82.090	ENSG00000103005	USB1	100	85.981	Homo_sapiens
ENSCPOG00000014325	USB1	98	46.595	ENSAPOG00000011942	usb1	99	46.595	Acanthochromis_polyacanthus
ENSCPOG00000014325	USB1	100	81.413	ENSAMEG00000017205	USB1	100	82.900	Ailuropoda_melanoleuca
ENSCPOG00000014325	USB1	83	54.464	ENSACIG00000012234	usb1	99	50.370	Amphilophus_citrinellus
ENSCPOG00000014325	USB1	83	54.018	ENSAOCG00000014831	usb1	99	48.399	Amphiprion_ocellaris
ENSCPOG00000014325	USB1	83	54.464	ENSAPEG00000000296	usb1	99	48.754	Amphiprion_percula
ENSCPOG00000014325	USB1	95	50.000	ENSATEG00000009348	usb1	99	48.571	Anabas_testudineus
ENSCPOG00000014325	USB1	83	67.699	ENSAPLG00000002756	USB1	100	68.142	Anas_platyrhynchos
ENSCPOG00000014325	USB1	83	62.389	ENSACAG00000015481	USB1	99	62.389	Anolis_carolinensis
ENSCPOG00000014325	USB1	100	80.970	ENSANAG00000035640	USB1	100	80.970	Aotus_nancymaae
ENSCPOG00000014325	USB1	83	54.018	ENSACLG00000020586	usb1	99	47.857	Astatotilapia_calliptera
ENSCPOG00000014325	USB1	86	49.351	ENSAMXG00000040146	usb1	95	44.444	Astyanax_mexicanus
ENSCPOG00000014325	USB1	100	82.836	ENSBTAG00000015758	USB1	100	82.836	Bos_taurus
ENSCPOG00000014325	USB1	100	82.836	ENSCJAG00000011733	USB1	100	82.836	Callithrix_jacchus
ENSCPOG00000014325	USB1	99	78.676	ENSCAFG00000008556	USB1	73	79.412	Canis_familiaris
ENSCPOG00000014325	USB1	99	79.401	ENSCAFG00020009263	USB1	99	79.401	Canis_lupus_dingo
ENSCPOG00000014325	USB1	100	80.970	ENSCHIG00000024290	USB1	100	80.970	Capra_hircus
ENSCPOG00000014325	USB1	100	81.343	ENSTSYG00000006997	USB1	100	82.463	Carlito_syrichta
ENSCPOG00000014325	USB1	86	84.348	ENSCAPG00000009057	USB1	100	84.348	Cavia_aperea
ENSCPOG00000014325	USB1	100	81.716	ENSCCAG00000022132	USB1	100	81.716	Cebus_capucinus
ENSCPOG00000014325	USB1	100	82.090	ENSCATG00000032174	USB1	100	83.209	Cercocebus_atys
ENSCPOG00000014325	USB1	66	95.455	ENSCLAG00000007363	USB1	100	95.455	Chinchilla_lanigera
ENSCPOG00000014325	USB1	100	82.090	ENSCSAG00000004783	USB1	100	83.209	Chlorocebus_sabaeus
ENSCPOG00000014325	USB1	100	61.151	ENSCPBG00000026943	USB1	100	61.871	Chrysemys_picta_bellii
ENSCPOG00000014325	USB1	85	31.837	ENSCING00000011490	-	98	30.389	Ciona_intestinalis
ENSCPOG00000014325	USB1	82	32.301	ENSCSAVG00000000894	-	81	32.301	Ciona_savignyi
ENSCPOG00000014325	USB1	100	81.343	ENSCANG00000037135	USB1	100	82.463	Colobus_angolensis_palliatus
ENSCPOG00000014325	USB1	100	81.716	ENSCGRG00001011243	USB1	100	81.716	Cricetulus_griseus_chok1gshd
ENSCPOG00000014325	USB1	100	81.716	ENSCGRG00000013252	USB1	100	81.716	Cricetulus_griseus_crigri
ENSCPOG00000014325	USB1	98	45.985	ENSCSEG00000013881	usb1	99	45.985	Cynoglossus_semilaevis
ENSCPOG00000014325	USB1	83	50.439	ENSCVAG00000009252	usb1	97	50.877	Cyprinodon_variegatus
ENSCPOG00000014325	USB1	86	48.052	ENSDARG00000003841	usb1	99	44.000	Danio_rerio
ENSCPOG00000014325	USB1	100	76.866	ENSDORG00000001888	Usb1	100	77.239	Dipodomys_ordii
ENSCPOG00000014325	USB1	77	40.000	FBgn0037713	CG16790	97	36.264	Drosophila_melanogaster
ENSCPOG00000014325	USB1	100	66.791	ENSETEG00000019682	USB1	100	66.791	Echinops_telfairi
ENSCPOG00000014325	USB1	86	46.983	ENSEBUG00000005889	usb1	81	46.983	Eptatretus_burgeri
ENSCPOG00000014325	USB1	100	83.209	ENSEASG00005005484	USB1	100	83.209	Equus_asinus_asinus
ENSCPOG00000014325	USB1	100	83.209	ENSECAG00000019493	USB1	91	83.209	Equus_caballus
ENSCPOG00000014325	USB1	66	80.114	ENSEEUG00000000154	USB1	100	60.526	Erinaceus_europaeus
ENSCPOG00000014325	USB1	83	48.444	ENSELUG00000010974	usb1	99	43.956	Esox_lucius
ENSCPOG00000014325	USB1	100	81.716	ENSFCAG00000002693	USB1	100	82.463	Felis_catus
ENSCPOG00000014325	USB1	86	61.739	ENSFALG00000006876	USB1	99	58.801	Ficedula_albicollis
ENSCPOG00000014325	USB1	100	89.925	ENSFDAG00000010052	USB1	100	89.925	Fukomys_damarensis
ENSCPOG00000014325	USB1	85	47.521	ENSFHEG00000012334	usb1	96	48.347	Fundulus_heteroclitus
ENSCPOG00000014325	USB1	83	49.550	ENSGMOG00000004228	usb1	99	49.550	Gadus_morhua
ENSCPOG00000014325	USB1	83	67.411	ENSGALG00000035604	USB1	99	62.172	Gallus_gallus
ENSCPOG00000014325	USB1	98	48.727	ENSGAFG00000021890	usb1	99	48.727	Gambusia_affinis
ENSCPOG00000014325	USB1	97	47.490	ENSGACG00000003257	usb1	99	47.826	Gasterosteus_aculeatus
ENSCPOG00000014325	USB1	100	62.271	ENSGAGG00000022572	USB1	100	62.271	Gopherus_agassizii
ENSCPOG00000014325	USB1	100	82.463	ENSGGOG00000017147	USB1	100	82.463	Gorilla_gorilla
ENSCPOG00000014325	USB1	83	54.464	ENSHBUG00000009823	usb1	99	48.029	Haplochromis_burtoni
ENSCPOG00000014325	USB1	100	88.060	ENSHGLG00000016078	USB1	98	88.060	Heterocephalus_glaber_female
ENSCPOG00000014325	USB1	100	88.060	ENSHGLG00100005562	USB1	98	88.060	Heterocephalus_glaber_male
ENSCPOG00000014325	USB1	80	53.704	ENSHCOG00000015633	usb1	99	50.000	Hippocampus_comes
ENSCPOG00000014325	USB1	83	52.232	ENSIPUG00000008601	usb1	99	45.993	Ictalurus_punctatus
ENSCPOG00000014325	USB1	100	81.319	ENSSTOG00000007548	USB1	100	81.685	Ictidomys_tridecemlineatus
ENSCPOG00000014325	USB1	100	84.644	ENSJJAG00000021859	Usb1	100	84.644	Jaculus_jaculus
ENSCPOG00000014325	USB1	83	53.125	ENSKMAG00000007200	usb1	99	47.500	Kryptolebias_marmoratus
ENSCPOG00000014325	USB1	75	53.202	ENSLBEG00000008452	usb1	65	54.124	Labrus_bergylta
ENSCPOG00000014325	USB1	83	57.205	ENSLACG00000000105	USB1	92	52.985	Latimeria_chalumnae
ENSCPOG00000014325	USB1	92	52.846	ENSLOCG00000000465	usb1	99	49.117	Lepisosteus_oculatus
ENSCPOG00000014325	USB1	100	63.869	ENSLAFG00000002267	USB1	100	64.234	Loxodonta_africana
ENSCPOG00000014325	USB1	100	82.090	ENSMFAG00000003926	USB1	100	83.209	Macaca_fascicularis
ENSCPOG00000014325	USB1	100	82.090	ENSMMUG00000022669	USB1	100	83.209	Macaca_mulatta
ENSCPOG00000014325	USB1	100	81.716	ENSMNEG00000042487	USB1	100	82.836	Macaca_nemestrina
ENSCPOG00000014325	USB1	100	82.090	ENSMLEG00000028756	USB1	100	83.209	Mandrillus_leucophaeus
ENSCPOG00000014325	USB1	98	48.921	ENSMAMG00000015092	usb1	99	48.921	Mastacembelus_armatus
ENSCPOG00000014325	USB1	83	54.018	ENSMZEG00005010008	usb1	99	47.670	Maylandia_zebra
ENSCPOG00000014325	USB1	100	80.224	ENSMAUG00000007832	Usb1	100	80.224	Mesocricetus_auratus
ENSCPOG00000014325	USB1	100	81.716	ENSMICG00000004900	USB1	100	83.209	Microcebus_murinus
ENSCPOG00000014325	USB1	100	79.182	ENSMOCG00000022647	Usb1	100	79.182	Microtus_ochrogaster
ENSCPOG00000014325	USB1	85	51.528	ENSMMOG00000000490	usb1	99	50.190	Mola_mola
ENSCPOG00000014325	USB1	81	72.936	ENSMODG00000014067	USB1	100	65.683	Monodelphis_domestica
ENSCPOG00000014325	USB1	83	54.464	ENSMALG00000005930	usb1	99	48.754	Monopterus_albus
ENSCPOG00000014325	USB1	100	80.597	MGP_CAROLIEiJ_G0031421	Usb1	100	80.597	Mus_caroli
ENSCPOG00000014325	USB1	100	80.224	ENSMUSG00000031792	Usb1	100	80.224	Mus_musculus
ENSCPOG00000014325	USB1	100	79.851	MGP_PahariEiJ_G0023019	Usb1	100	82.051	Mus_pahari
ENSCPOG00000014325	USB1	100	79.478	MGP_SPRETEiJ_G0032540	Usb1	100	79.478	Mus_spretus
ENSCPOG00000014325	USB1	100	79.554	ENSMPUG00000004684	USB1	96	79.554	Mustela_putorius_furo
ENSCPOG00000014325	USB1	86	87.446	ENSMLUG00000007400	USB1	100	87.446	Myotis_lucifugus
ENSCPOG00000014325	USB1	100	81.413	ENSNGAG00000009703	Usb1	100	81.784	Nannospalax_galili
ENSCPOG00000014325	USB1	87	48.498	ENSNBRG00000008747	usb1	99	53.738	Neolamprologus_brichardi
ENSCPOG00000014325	USB1	94	81.818	ENSNLEG00000003340	USB1	100	81.818	Nomascus_leucogenys
ENSCPOG00000014325	USB1	56	57.143	ENSMEUG00000003328	-	100	59.355	Notamacropus_eugenii
ENSCPOG00000014325	USB1	62	91.176	ENSOPRG00000011803	USB1	72	91.176	Ochotona_princeps
ENSCPOG00000014325	USB1	100	90.226	ENSODEG00000016214	USB1	100	90.226	Octodon_degus
ENSCPOG00000014325	USB1	98	48.029	ENSONIG00000011063	usb1	99	48.029	Oreochromis_niloticus
ENSCPOG00000014325	USB1	83	72.889	ENSOANG00000012118	USB1	94	72.889	Ornithorhynchus_anatinus
ENSCPOG00000014325	USB1	86	49.784	ENSORLG00000012479	usb1	99	45.985	Oryzias_latipes
ENSCPOG00000014325	USB1	86	49.784	ENSORLG00020018671	usb1	99	46.296	Oryzias_latipes_hni
ENSCPOG00000014325	USB1	89	48.750	ENSORLG00015009679	usb1	99	46.863	Oryzias_latipes_hsok
ENSCPOG00000014325	USB1	85	50.000	ENSOMEG00000012930	usb1	99	45.455	Oryzias_melastigma
ENSCPOG00000014325	USB1	100	77.612	ENSOGAG00000003273	USB1	100	77.612	Otolemur_garnettii
ENSCPOG00000014325	USB1	94	81.275	ENSOARG00000001107	USB1	96	81.275	Ovis_aries
ENSCPOG00000014325	USB1	100	82.463	ENSPPAG00000042137	USB1	100	82.463	Pan_paniscus
ENSCPOG00000014325	USB1	100	81.343	ENSPPRG00000024797	USB1	100	82.090	Panthera_pardus
ENSCPOG00000014325	USB1	100	80.970	ENSPTIG00000007506	USB1	100	81.716	Panthera_tigris_altaica
ENSCPOG00000014325	USB1	100	76.866	ENSPTRG00000008172	USB1	100	86.916	Pan_troglodytes
ENSCPOG00000014325	USB1	100	82.090	ENSPANG00000025138	USB1	100	83.209	Papio_anubis
ENSCPOG00000014325	USB1	83	53.846	ENSPKIG00000015109	usb1	75	53.846	Paramormyrops_kingsleyae
ENSCPOG00000014325	USB1	83	52.889	ENSPSIG00000004305	USB1	100	52.889	Pelodiscus_sinensis
ENSCPOG00000014325	USB1	83	51.570	ENSPMGG00000017725	usb1	98	48.473	Periophthalmus_magnuspinnatus
ENSCPOG00000014325	USB1	100	79.044	ENSPEMG00000016183	Usb1	100	79.044	Peromyscus_maniculatus_bairdii
ENSCPOG00000014325	USB1	88	49.789	ENSPMAG00000000462	usb1	100	49.789	Petromyzon_marinus
ENSCPOG00000014325	USB1	98	47.826	ENSPFOG00000011130	usb1	99	47.826	Poecilia_formosa
ENSCPOG00000014325	USB1	98	47.826	ENSPLAG00000009820	usb1	99	47.826	Poecilia_latipinna
ENSCPOG00000014325	USB1	98	48.188	ENSPMEG00000006402	usb1	99	48.188	Poecilia_mexicana
ENSCPOG00000014325	USB1	85	48.760	ENSPREG00000001047	usb1	98	49.174	Poecilia_reticulata
ENSCPOG00000014325	USB1	95	78.824	ENSPPYG00000007401	USB1	100	78.824	Pongo_abelii
ENSCPOG00000014325	USB1	100	83.582	ENSPCOG00000022612	USB1	100	83.582	Propithecus_coquereli
ENSCPOG00000014325	USB1	100	79.104	ENSPVAG00000004613	USB1	100	79.104	Pteropus_vampyrus
ENSCPOG00000014325	USB1	83	54.464	ENSPNYG00000022262	usb1	99	48.029	Pundamilia_nyererei
ENSCPOG00000014325	USB1	83	50.893	ENSPNAG00000011736	usb1	99	44.369	Pygocentrus_nattereri
ENSCPOG00000014325	USB1	100	80.970	ENSRNOG00000013216	Usb1	100	80.970	Rattus_norvegicus
ENSCPOG00000014325	USB1	100	76.866	ENSRBIG00000044466	USB1	100	87.850	Rhinopithecus_bieti
ENSCPOG00000014325	USB1	100	82.090	ENSRROG00000029211	USB1	100	83.209	Rhinopithecus_roxellana
ENSCPOG00000014325	USB1	100	81.343	ENSSBOG00000029362	USB1	100	81.343	Saimiri_boliviensis_boliviensis
ENSCPOG00000014325	USB1	82	73.516	ENSSHAG00000006993	USB1	96	69.136	Sarcophilus_harrisii
ENSCPOG00000014325	USB1	94	54.365	ENSSFOG00015023663	usb1	79	54.365	Scleropages_formosus
ENSCPOG00000014325	USB1	87	51.012	ENSSMAG00000015834	usb1	99	46.959	Scophthalmus_maximus
ENSCPOG00000014325	USB1	83	55.357	ENSSDUG00000002949	usb1	99	49.275	Seriola_dumerili
ENSCPOG00000014325	USB1	85	54.626	ENSSLDG00000014174	usb1	99	48.070	Seriola_lalandi_dorsalis
ENSCPOG00000014325	USB1	80	66.822	ENSSPUG00000006741	USB1	100	66.822	Sphenodon_punctatus
ENSCPOG00000014325	USB1	98	46.996	ENSSPAG00000007484	usb1	99	48.057	Stegastes_partitus
ENSCPOG00000014325	USB1	100	83.271	ENSSSCG00000002807	USB1	100	83.271	Sus_scrofa
ENSCPOG00000014325	USB1	79	67.619	ENSTGUG00000004792	USB1	99	59.245	Taeniopygia_guttata
ENSCPOG00000014325	USB1	98	47.212	ENSTRUG00000021069	usb1	99	47.212	Takifugu_rubripes
ENSCPOG00000014325	USB1	98	45.247	ENSTNIG00000000626	usb1	98	45.247	Tetraodon_nigroviridis
ENSCPOG00000014325	USB1	86	57.328	ENSTBEG00000001507	USB1	100	57.328	Tupaia_belangeri
ENSCPOG00000014325	USB1	100	81.041	ENSUAMG00000016823	USB1	100	81.413	Ursus_americanus
ENSCPOG00000014325	USB1	80	86.916	ENSUMAG00000021369	USB1	100	86.916	Ursus_maritimus
ENSCPOG00000014325	USB1	99	80.224	ENSVVUG00000023700	USB1	93	81.743	Vulpes_vulpes
ENSCPOG00000014325	USB1	81	56.422	ENSXETG00000013795	usb1	99	52.091	Xenopus_tropicalis
ENSCPOG00000014325	USB1	83	52.889	ENSXMAG00000024687	usb1	80	48.980	Xiphophorus_maculatus