EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCPOG00000014589 (Gene tree)
Gene ID: 100712689
Gene Symbol: SF3A1
Alias: PRPF21|Prp21|SAP114|SF3a120
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Plus strand
Length: 19674 bases
Position: chrDS562859.1:12788912-12808585
Accession: 100712689
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000013144	PRP21_like_P	PF12230.8	4.2e-52	1	1
ENSCPOP00000013144	Surp	PF01805.20	5.9e-46	1	2
ENSCPOP00000013144	Surp	PF01805.20	5.9e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000014734	SF3A1-201	3835	XM_003478319	ENSCPOP00000013144	793 (aa)	XP_003478367	H0VRD6

Gene Model

Click here to download ENSCPOG00000014589's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000014589's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000014589	SF3A1	100	98.613	ENSG00000099995	SF3A1	100	98.613	Homo_sapiens
ENSCPOG00000014589	SF3A1	100	83.522	ENSAPOG00000020465	sf3a1	99	85.161	Acanthochromis_polyacanthus
ENSCPOG00000014589	SF3A1	100	98.491	ENSAMEG00000007737	SF3A1	100	98.491	Ailuropoda_melanoleuca
ENSCPOG00000014589	SF3A1	100	84.277	ENSACIG00000020672	sf3a1	99	84.910	Amphilophus_citrinellus
ENSCPOG00000014589	SF3A1	100	83.250	ENSAOCG00000003060	sf3a1	99	84.910	Amphiprion_ocellaris
ENSCPOG00000014589	SF3A1	100	83.375	ENSAPEG00000010735	sf3a1	99	85.038	Amphiprion_percula
ENSCPOG00000014589	SF3A1	96	85.938	ENSATEG00000021201	sf3a1	98	85.219	Anabas_testudineus
ENSCPOG00000014589	SF3A1	95	94.055	ENSAPLG00000009057	SF3A1	99	93.548	Anas_platyrhynchos
ENSCPOG00000014589	SF3A1	100	85.961	ENSACAG00000009415	SF3A1	100	87.685	Anolis_carolinensis
ENSCPOG00000014589	SF3A1	100	98.739	ENSANAG00000032045	SF3A1	100	98.739	Aotus_nancymaae
ENSCPOG00000014589	SF3A1	100	84.383	ENSACLG00000012622	sf3a1	99	85.659	Astatotilapia_calliptera
ENSCPOG00000014589	SF3A1	99	83.609	ENSAMXG00000005382	sf3a1	99	84.685	Astyanax_mexicanus
ENSCPOG00000014589	SF3A1	100	99.243	ENSBTAG00000003390	SF3A1	100	99.243	Bos_taurus
ENSCPOG00000014589	SF3A1	84	43.268	WBGene00004188	prp-21	94	43.502	Caenorhabditis_elegans
ENSCPOG00000014589	SF3A1	100	98.865	ENSCJAG00000010370	SF3A1	100	98.865	Callithrix_jacchus
ENSCPOG00000014589	SF3A1	100	98.865	ENSCAFG00000012559	SF3A1	100	98.865	Canis_familiaris
ENSCPOG00000014589	SF3A1	100	98.865	ENSCAFG00020000838	SF3A1	100	98.865	Canis_lupus_dingo
ENSCPOG00000014589	SF3A1	100	99.117	ENSCHIG00000018642	SF3A1	100	99.117	Capra_hircus
ENSCPOG00000014589	SF3A1	100	99.117	ENSTSYG00000004739	SF3A1	100	99.117	Carlito_syrichta
ENSCPOG00000014589	SF3A1	94	81.976	ENSCAPG00000015414	SF3A1	98	81.976	Cavia_aperea
ENSCPOG00000014589	SF3A1	100	98.739	ENSCCAG00000032006	SF3A1	100	98.739	Cebus_capucinus
ENSCPOG00000014589	SF3A1	100	98.865	ENSCATG00000029241	SF3A1	100	98.865	Cercocebus_atys
ENSCPOG00000014589	SF3A1	100	98.991	ENSCLAG00000006508	SF3A1	100	98.991	Chinchilla_lanigera
ENSCPOG00000014589	SF3A1	100	98.739	ENSCSAG00000009470	SF3A1	100	98.739	Chlorocebus_sabaeus
ENSCPOG00000014589	SF3A1	61	99.083	ENSCHOG00000005201	SF3A1	69	99.083	Choloepus_hoffmanni
ENSCPOG00000014589	SF3A1	100	91.184	ENSCPBG00000007595	SF3A1	100	91.688	Chrysemys_picta_bellii
ENSCPOG00000014589	SF3A1	94	52.249	ENSCING00000008526	-	66	58.046	Ciona_intestinalis
ENSCPOG00000014589	SF3A1	96	51.484	ENSCSAVG00000005608	-	92	62.712	Ciona_savignyi
ENSCPOG00000014589	SF3A1	100	98.739	ENSCANG00000033564	SF3A1	100	98.739	Colobus_angolensis_palliatus
ENSCPOG00000014589	SF3A1	100	98.361	ENSCGRG00001008933	Sf3a1	100	98.361	Cricetulus_griseus_chok1gshd
ENSCPOG00000014589	SF3A1	100	98.361	ENSCGRG00000006127	Sf3a1	100	98.361	Cricetulus_griseus_crigri
ENSCPOG00000014589	SF3A1	99	82.107	ENSCSEG00000010792	sf3a1	99	82.458	Cynoglossus_semilaevis
ENSCPOG00000014589	SF3A1	100	82.767	ENSCVAG00000004560	sf3a1	99	83.077	Cyprinodon_variegatus
ENSCPOG00000014589	SF3A1	100	82.412	ENSDARG00000041887	sf3a1	97	85.007	Danio_rerio
ENSCPOG00000014589	SF3A1	100	98.616	ENSDNOG00000010629	SF3A1	100	98.616	Dasypus_novemcinctus
ENSCPOG00000014589	SF3A1	100	98.991	ENSDORG00000005613	Sf3a1	100	98.991	Dipodomys_ordii
ENSCPOG00000014589	SF3A1	79	61.842	FBgn0266917	Sf3a1	85	60.180	Drosophila_melanogaster
ENSCPOG00000014589	SF3A1	84	97.156	ENSETEG00000017194	SF3A1	100	95.299	Echinops_telfairi
ENSCPOG00000014589	SF3A1	100	64.824	ENSEBUG00000001285	sf3a1	96	67.450	Eptatretus_burgeri
ENSCPOG00000014589	SF3A1	100	99.369	ENSEASG00005010254	SF3A1	100	99.369	Equus_asinus_asinus
ENSCPOG00000014589	SF3A1	100	99.369	ENSECAG00000023962	SF3A1	100	99.369	Equus_caballus
ENSCPOG00000014589	SF3A1	73	95.082	ENSEEUG00000003159	SF3A1	82	95.082	Erinaceus_europaeus
ENSCPOG00000014589	SF3A1	100	82.456	ENSELUG00000022578	sf3a1	98	82.821	Esox_lucius
ENSCPOG00000014589	SF3A1	100	98.991	ENSFCAG00000011932	SF3A1	100	98.991	Felis_catus
ENSCPOG00000014589	SF3A1	95	92.989	ENSFALG00000006944	SF3A1	100	92.065	Ficedula_albicollis
ENSCPOG00000014589	SF3A1	100	99.117	ENSFDAG00000009560	SF3A1	100	99.117	Fukomys_damarensis
ENSCPOG00000014589	SF3A1	100	84.151	ENSFHEG00000010866	sf3a1	99	84.359	Fundulus_heteroclitus
ENSCPOG00000014589	SF3A1	100	81.108	ENSGMOG00000016024	sf3a1	97	81.323	Gadus_morhua
ENSCPOG00000014589	SF3A1	95	94.048	ENSGALG00000007937	SF3A1	100	92.569	Gallus_gallus
ENSCPOG00000014589	SF3A1	100	83.019	ENSGAFG00000009111	sf3a1	99	83.333	Gambusia_affinis
ENSCPOG00000014589	SF3A1	100	82.116	ENSGACG00000011893	sf3a1	97	84.031	Gasterosteus_aculeatus
ENSCPOG00000014589	SF3A1	96	91.327	ENSGAGG00000000762	SF3A1	99	91.853	Gopherus_agassizii
ENSCPOG00000014589	SF3A1	100	98.613	ENSGGOG00000012631	SF3A1	100	98.613	Gorilla_gorilla
ENSCPOG00000014589	SF3A1	100	84.383	ENSHBUG00000015795	sf3a1	99	85.659	Haplochromis_burtoni
ENSCPOG00000014589	SF3A1	100	99.496	ENSHGLG00000007907	SF3A1	100	99.496	Heterocephalus_glaber_female
ENSCPOG00000014589	SF3A1	100	99.496	ENSHGLG00100013799	SF3A1	100	99.496	Heterocephalus_glaber_male
ENSCPOG00000014589	SF3A1	100	80.252	ENSHCOG00000015423	sf3a1	99	81.161	Hippocampus_comes
ENSCPOG00000014589	SF3A1	96	82.552	ENSIPUG00000002470	sf3a1	98	83.464	Ictalurus_punctatus
ENSCPOG00000014589	SF3A1	100	99.117	ENSSTOG00000013892	SF3A1	100	99.117	Ictidomys_tridecemlineatus
ENSCPOG00000014589	SF3A1	100	98.866	ENSJJAG00000022566	Sf3a1	100	98.866	Jaculus_jaculus
ENSCPOG00000014589	SF3A1	100	82.767	ENSKMAG00000002400	sf3a1	98	84.766	Kryptolebias_marmoratus
ENSCPOG00000014589	SF3A1	100	82.516	ENSLBEG00000022974	sf3a1	99	83.742	Labrus_bergylta
ENSCPOG00000014589	SF3A1	100	87.202	ENSLACG00000003565	SF3A1	97	88.932	Latimeria_chalumnae
ENSCPOG00000014589	SF3A1	100	85.088	ENSLOCG00000008251	sf3a1	97	87.273	Lepisosteus_oculatus
ENSCPOG00000014589	SF3A1	98	61.911	ENSLAFG00000026032	-	98	62.038	Loxodonta_africana
ENSCPOG00000014589	SF3A1	100	98.487	ENSLAFG00000000448	SF3A1	100	98.487	Loxodonta_africana
ENSCPOG00000014589	SF3A1	100	98.613	ENSMFAG00000031979	SF3A1	100	98.613	Macaca_fascicularis
ENSCPOG00000014589	SF3A1	100	98.613	ENSMMUG00000005547	SF3A1	100	98.613	Macaca_mulatta
ENSCPOG00000014589	SF3A1	100	98.487	ENSMNEG00000037229	SF3A1	100	98.487	Macaca_nemestrina
ENSCPOG00000014589	SF3A1	100	98.739	ENSMLEG00000041908	SF3A1	100	98.739	Mandrillus_leucophaeus
ENSCPOG00000014589	SF3A1	97	85.770	ENSMAMG00000006460	sf3a1	97	85.899	Mastacembelus_armatus
ENSCPOG00000014589	SF3A1	100	84.383	ENSMZEG00005009633	sf3a1	99	85.659	Maylandia_zebra
ENSCPOG00000014589	SF3A1	95	94.048	ENSMGAG00000001330	SF3A1	99	93.540	Meleagris_gallopavo
ENSCPOG00000014589	SF3A1	92	94.945	ENSMAUG00000020317	Sf3a1	94	94.945	Mesocricetus_auratus
ENSCPOG00000014589	SF3A1	100	98.613	ENSMICG00000010038	SF3A1	100	98.613	Microcebus_murinus
ENSCPOG00000014589	SF3A1	100	98.361	ENSMOCG00000008438	Sf3a1	100	98.361	Microtus_ochrogaster
ENSCPOG00000014589	SF3A1	100	81.384	ENSMMOG00000015588	sf3a1	97	83.464	Mola_mola
ENSCPOG00000014589	SF3A1	100	97.856	ENSMODG00000009270	SF3A1	100	97.856	Monodelphis_domestica
ENSCPOG00000014589	SF3A1	100	84.151	ENSMALG00000000148	sf3a1	99	86.104	Monopterus_albus
ENSCPOG00000014589	SF3A1	100	98.108	MGP_CAROLIEiJ_G0016029	Sf3a1	100	98.108	Mus_caroli
ENSCPOG00000014589	SF3A1	100	98.108	ENSMUSG00000002129	Sf3a1	100	98.108	Mus_musculus
ENSCPOG00000014589	SF3A1	100	97.982	MGP_PahariEiJ_G0016862	Sf3a1	100	97.982	Mus_pahari
ENSCPOG00000014589	SF3A1	100	98.108	MGP_SPRETEiJ_G0016870	Sf3a1	100	98.108	Mus_spretus
ENSCPOG00000014589	SF3A1	100	98.865	ENSMPUG00000013144	SF3A1	100	98.865	Mustela_putorius_furo
ENSCPOG00000014589	SF3A1	100	99.117	ENSMLUG00000002139	SF3A1	100	99.117	Myotis_lucifugus
ENSCPOG00000014589	SF3A1	100	98.739	ENSNGAG00000016977	Sf3a1	100	98.739	Nannospalax_galili
ENSCPOG00000014589	SF3A1	100	83.645	ENSNBRG00000016642	sf3a1	96	87.220	Neolamprologus_brichardi
ENSCPOG00000014589	SF3A1	100	98.739	ENSNLEG00000003686	SF3A1	100	98.739	Nomascus_leucogenys
ENSCPOG00000014589	SF3A1	96	88.158	ENSMEUG00000008741	SF3A1	100	88.158	Notamacropus_eugenii
ENSCPOG00000014589	SF3A1	100	98.487	ENSOPRG00000016636	SF3A1	100	98.487	Ochotona_princeps
ENSCPOG00000014589	SF3A1	100	99.117	ENSODEG00000002571	SF3A1	100	99.117	Octodon_degus
ENSCPOG00000014589	SF3A1	100	84.105	ENSONIG00000010848	sf3a1	99	85.038	Oreochromis_niloticus
ENSCPOG00000014589	SF3A1	100	98.739	ENSOCUG00000007633	SF3A1	100	98.739	Oryctolagus_cuniculus
ENSCPOG00000014589	SF3A1	96	81.759	ENSORLG00000013050	sf3a1	98	83.962	Oryzias_latipes
ENSCPOG00000014589	SF3A1	96	82.546	ENSORLG00020003236	sf3a1	94	84.097	Oryzias_latipes_hni
ENSCPOG00000014589	SF3A1	100	82.138	ENSORLG00015017411	sf3a1	99	84.129	Oryzias_latipes_hsok
ENSCPOG00000014589	SF3A1	100	82.516	ENSOMEG00000013362	sf3a1	99	83.871	Oryzias_melastigma
ENSCPOG00000014589	SF3A1	100	98.613	ENSOGAG00000012931	SF3A1	100	98.613	Otolemur_garnettii
ENSCPOG00000014589	SF3A1	100	97.352	ENSOARG00000006849	SF3A1	100	97.352	Ovis_aries
ENSCPOG00000014589	SF3A1	100	97.604	ENSPPAG00000041790	SF3A1	100	97.604	Pan_paniscus
ENSCPOG00000014589	SF3A1	100	98.991	ENSPPRG00000004391	SF3A1	100	98.991	Panthera_pardus
ENSCPOG00000014589	SF3A1	97	99.093	ENSPTIG00000000844	SF3A1	100	99.093	Panthera_tigris_altaica
ENSCPOG00000014589	SF3A1	100	98.613	ENSPTRG00000014240	SF3A1	100	98.613	Pan_troglodytes
ENSCPOG00000014589	SF3A1	100	98.739	ENSPANG00000020772	SF3A1	100	98.739	Papio_anubis
ENSCPOG00000014589	SF3A1	82	94.505	ENSPSIG00000012803	SF3A1	96	94.915	Pelodiscus_sinensis
ENSCPOG00000014589	SF3A1	96	84.293	ENSPMGG00000023096	sf3a1	100	84.686	Periophthalmus_magnuspinnatus
ENSCPOG00000014589	SF3A1	100	98.487	ENSPEMG00000009494	Sf3a1	100	98.487	Peromyscus_maniculatus_bairdii
ENSCPOG00000014589	SF3A1	69	77.677	ENSPMAG00000007139	-	90	79.323	Petromyzon_marinus
ENSCPOG00000014589	SF3A1	100	97.604	ENSPCIG00000022692	SF3A1	100	97.604	Phascolarctos_cinereus
ENSCPOG00000014589	SF3A1	100	75.126	ENSPFOG00000016768	sf3a1	93	78.776	Poecilia_formosa
ENSCPOG00000014589	SF3A1	100	83.417	ENSPLAG00000017268	sf3a1	99	83.590	Poecilia_latipinna
ENSCPOG00000014589	SF3A1	84	85.843	ENSPMEG00000019811	sf3a1	98	85.090	Poecilia_mexicana
ENSCPOG00000014589	SF3A1	100	83.543	ENSPREG00000010347	sf3a1	99	83.974	Poecilia_reticulata
ENSCPOG00000014589	SF3A1	100	98.739	ENSPPYG00000011707	SF3A1	100	98.739	Pongo_abelii
ENSCPOG00000014589	SF3A1	57	99.057	ENSPCAG00000003266	SF3A1	57	99.057	Procavia_capensis
ENSCPOG00000014589	SF3A1	100	98.865	ENSPCOG00000026630	SF3A1	100	98.865	Propithecus_coquereli
ENSCPOG00000014589	SF3A1	100	94.704	ENSPVAG00000017719	SF3A1	94	98.255	Pteropus_vampyrus
ENSCPOG00000014589	SF3A1	100	84.383	ENSPNYG00000018706	sf3a1	99	85.659	Pundamilia_nyererei
ENSCPOG00000014589	SF3A1	99	83.227	ENSPNAG00000003721	sf3a1	98	85.826	Pygocentrus_nattereri
ENSCPOG00000014589	SF3A1	100	98.361	ENSRNOG00000005218	Sf3a1	100	98.361	Rattus_norvegicus
ENSCPOG00000014589	SF3A1	100	98.865	ENSRBIG00000032167	SF3A1	100	98.865	Rhinopithecus_bieti
ENSCPOG00000014589	SF3A1	100	98.865	ENSRROG00000044908	SF3A1	100	98.865	Rhinopithecus_roxellana
ENSCPOG00000014589	SF3A1	97	94.832	ENSSBOG00000021960	SF3A1	100	99.114	Saimiri_boliviensis_boliviensis
ENSCPOG00000014589	SF3A1	97	95.213	ENSSHAG00000003666	SF3A1	98	95.213	Sarcophilus_harrisii
ENSCPOG00000014589	SF3A1	100	83.375	ENSSFOG00015004579	sf3a1	99	85.513	Scleropages_formosus
ENSCPOG00000014589	SF3A1	100	81.635	ENSSMAG00000004275	sf3a1	97	83.268	Scophthalmus_maximus
ENSCPOG00000014589	SF3A1	100	83.899	ENSSDUG00000022219	sf3a1	99	84.744	Seriola_dumerili
ENSCPOG00000014589	SF3A1	100	83.899	ENSSLDG00000012642	sf3a1	99	84.744	Seriola_lalandi_dorsalis
ENSCPOG00000014589	SF3A1	97	95.855	ENSSARG00000005960	SF3A1	100	95.855	Sorex_araneus
ENSCPOG00000014589	SF3A1	96	92.228	ENSSPUG00000018863	SF3A1	100	92.164	Sphenodon_punctatus
ENSCPOG00000014589	SF3A1	100	84.528	ENSSPAG00000011856	sf3a1	99	85.548	Stegastes_partitus
ENSCPOG00000014589	SF3A1	100	98.991	ENSSSCG00000010002	SF3A1	100	98.991	Sus_scrofa
ENSCPOG00000014589	SF3A1	95	93.931	ENSTGUG00000010547	SF3A1	99	93.774	Taeniopygia_guttata
ENSCPOG00000014589	SF3A1	100	81.258	ENSTRUG00000006118	sf3a1	97	82.745	Takifugu_rubripes
ENSCPOG00000014589	SF3A1	64	81.041	ENSTNIG00000005713	sf3a1	89	86.607	Tetraodon_nigroviridis
ENSCPOG00000014589	SF3A1	100	91.677	ENSTBEG00000012771	SF3A1	100	91.677	Tupaia_belangeri
ENSCPOG00000014589	SF3A1	100	98.741	ENSTTRG00000001535	SF3A1	100	98.741	Tursiops_truncatus
ENSCPOG00000014589	SF3A1	99	97.840	ENSUAMG00000006750	SF3A1	99	97.840	Ursus_americanus
ENSCPOG00000014589	SF3A1	99	97.959	ENSUMAG00000016665	SF3A1	99	97.959	Ursus_maritimus
ENSCPOG00000014589	SF3A1	100	98.865	ENSVVUG00000003075	SF3A1	100	98.865	Vulpes_vulpes
ENSCPOG00000014589	SF3A1	100	85.947	ENSXETG00000016144	sf3a1	100	85.822	Xenopus_tropicalis
ENSCPOG00000014589	SF3A1	100	82.767	ENSXCOG00000015653	sf3a1	99	83.077	Xiphophorus_couchianus
ENSCPOG00000014589	SF3A1	100	82.893	ENSXMAG00000002753	sf3a1	99	83.205	Xiphophorus_maculatus