EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCPOG00000014680 (Gene tree)
Gene ID: 100721704
Gene Symbol: CMSS1
Alias: C3orf26|MGC4308
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Plus strand
Length: 340984 bases
Position: chrDS562890.1:1644653-1985636
Accession: 100721704
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000013228	CMS1	PF14617.6	1.4e-32	1	1
ENSCPOP00000013228	DEAD	PF00270.29	1.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000014825	CMSS1-201	840	XM_013151732	ENSCPOP00000013228	279 (aa)	XP_013007186	H0VRL1

Gene Model

Click here to download ENSCPOG00000014680's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000014680's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000014680	CMSS1	100	86.380	ENSG00000184220	CMSS1	99	92.593	Homo_sapiens
ENSCPOG00000014680	CMSS1	72	65.347	ENSAPOG00000010604	cmss1	95	60.000	Acanthochromis_polyacanthus
ENSCPOG00000014680	CMSS1	92	86.873	ENSAMEG00000004092	CMSS1	100	86.873	Ailuropoda_melanoleuca
ENSCPOG00000014680	CMSS1	72	55.941	ENSACIG00000021854	cmss1	74	55.500	Amphilophus_citrinellus
ENSCPOG00000014680	CMSS1	100	52.365	ENSAOCG00000013361	cmss1	100	54.545	Amphiprion_ocellaris
ENSCPOG00000014680	CMSS1	72	65.347	ENSAPEG00000005829	cmss1	100	53.872	Amphiprion_percula
ENSCPOG00000014680	CMSS1	100	55.017	ENSATEG00000008209	cmss1	100	54.671	Anabas_testudineus
ENSCPOG00000014680	CMSS1	82	69.130	ENSAPLG00000010542	CMSS1	100	69.130	Anas_platyrhynchos
ENSCPOG00000014680	CMSS1	84	66.807	ENSACAG00000011065	CMSS1	97	62.500	Anolis_carolinensis
ENSCPOG00000014680	CMSS1	100	86.071	ENSANAG00000023565	CMSS1	100	86.071	Aotus_nancymaae
ENSCPOG00000014680	CMSS1	100	51.546	ENSACLG00000027294	cmss1	100	52.577	Astatotilapia_calliptera
ENSCPOG00000014680	CMSS1	100	46.580	ENSAMXG00000002046	cmss1	100	47.667	Astyanax_mexicanus
ENSCPOG00000014680	CMSS1	100	85.663	ENSBTAG00000013663	CMSS1	100	85.663	Bos_taurus
ENSCPOG00000014680	CMSS1	100	85.714	ENSCJAG00000000610	CMSS1	100	85.714	Callithrix_jacchus
ENSCPOG00000014680	CMSS1	96	85.874	ENSCAFG00000009230	CMSS1	96	85.874	Canis_familiaris
ENSCPOG00000014680	CMSS1	93	88.417	ENSCAFG00020009464	-	95	88.417	Canis_lupus_dingo
ENSCPOG00000014680	CMSS1	77	86.111	ENSCAFG00020024156	-	68	86.111	Canis_lupus_dingo
ENSCPOG00000014680	CMSS1	92	86.381	ENSCHIG00000013003	CMSS1	93	86.381	Capra_hircus
ENSCPOG00000014680	CMSS1	96	81.618	ENSTSYG00000009266	CMSS1	99	84.109	Carlito_syrichta
ENSCPOG00000014680	CMSS1	80	80.349	ENSCAPG00000013584	CMSS1	100	81.223	Cavia_aperea
ENSCPOG00000014680	CMSS1	100	87.143	ENSCCAG00000034685	CMSS1	100	87.143	Cebus_capucinus
ENSCPOG00000014680	CMSS1	100	87.097	ENSCATG00000031980	CMSS1	100	87.097	Cercocebus_atys
ENSCPOG00000014680	CMSS1	82	94.323	ENSCLAG00000011241	CMSS1	98	94.323	Chinchilla_lanigera
ENSCPOG00000014680	CMSS1	88	88.980	ENSCSAG00000006024	CMSS1	100	88.980	Chlorocebus_sabaeus
ENSCPOG00000014680	CMSS1	100	65.950	ENSCHOG00000012098	CMSS1	100	65.950	Choloepus_hoffmanni
ENSCPOG00000014680	CMSS1	70	41.500	ENSCING00000014848	-	100	42.781	Ciona_intestinalis
ENSCPOG00000014680	CMSS1	100	87.097	ENSCANG00000031337	CMSS1	100	87.097	Colobus_angolensis_palliatus
ENSCPOG00000014680	CMSS1	100	78.853	ENSCGRG00001014305	Cmss1	100	78.853	Cricetulus_griseus_chok1gshd
ENSCPOG00000014680	CMSS1	92	79.688	ENSCGRG00000006722	Cmss1	99	79.688	Cricetulus_griseus_crigri
ENSCPOG00000014680	CMSS1	100	52.189	ENSCSEG00000004958	cmss1	100	52.881	Cynoglossus_semilaevis
ENSCPOG00000014680	CMSS1	100	53.633	ENSCVAG00000005039	cmss1	100	54.325	Cyprinodon_variegatus
ENSCPOG00000014680	CMSS1	100	46.667	ENSDARG00000112579	cmss1	100	47.959	Danio_rerio
ENSCPOG00000014680	CMSS1	94	82.443	ENSDNOG00000040418	CMSS1	92	83.012	Dasypus_novemcinctus
ENSCPOG00000014680	CMSS1	100	85.663	ENSDORG00000010461	Cmss1	100	85.663	Dipodomys_ordii
ENSCPOG00000014680	CMSS1	95	80.224	ENSEASG00005010966	CMSS1	99	89.954	Equus_asinus_asinus
ENSCPOG00000014680	CMSS1	95	85.283	ENSECAG00000015662	CMSS1	99	89.823	Equus_caballus
ENSCPOG00000014680	CMSS1	100	54.480	ENSEEUG00000007624	-	100	55.197	Erinaceus_europaeus
ENSCPOG00000014680	CMSS1	100	50.658	ENSELUG00000019459	cmss1	100	51.667	Esox_lucius
ENSCPOG00000014680	CMSS1	100	89.247	ENSFCAG00000044577	CMSS1	100	89.247	Felis_catus
ENSCPOG00000014680	CMSS1	85	65.823	ENSFALG00000005816	CMSS1	100	65.823	Ficedula_albicollis
ENSCPOG00000014680	CMSS1	82	93.860	ENSFDAG00000012577	CMSS1	100	93.860	Fukomys_damarensis
ENSCPOG00000014680	CMSS1	81	61.472	ENSFHEG00000012008	cmss1	95	61.472	Fundulus_heteroclitus
ENSCPOG00000014680	CMSS1	99	51.590	ENSGMOG00000016729	cmss1	100	52.297	Gadus_morhua
ENSCPOG00000014680	CMSS1	93	65.152	ENSGALG00000015267	CMSS1	100	65.267	Gallus_gallus
ENSCPOG00000014680	CMSS1	74	64.734	ENSGAFG00000021217	cmss1	76	64.000	Gambusia_affinis
ENSCPOG00000014680	CMSS1	99	48.929	ENSGACG00000002798	cmss1	100	51.071	Gasterosteus_aculeatus
ENSCPOG00000014680	CMSS1	100	62.724	ENSGAGG00000019861	CMSS1	99	64.045	Gopherus_agassizii
ENSCPOG00000014680	CMSS1	92	87.597	ENSGGOG00000014125	CMSS1	99	87.597	Gorilla_gorilla
ENSCPOG00000014680	CMSS1	100	49.488	ENSHBUG00000008431	cmss1	100	52.759	Haplochromis_burtoni
ENSCPOG00000014680	CMSS1	91	90.119	ENSHGLG00000019481	CMSS1	100	90.119	Heterocephalus_glaber_female
ENSCPOG00000014680	CMSS1	92	90.272	ENSHGLG00100010314	CMSS1	100	90.272	Heterocephalus_glaber_male
ENSCPOG00000014680	CMSS1	100	52.542	ENSHCOG00000003222	cmss1	100	54.576	Hippocampus_comes
ENSCPOG00000014680	CMSS1	100	47.931	ENSIPUG00000011591	cmss1	100	48.980	Ictalurus_punctatus
ENSCPOG00000014680	CMSS1	100	86.380	ENSSTOG00000019366	CMSS1	100	86.380	Ictidomys_tridecemlineatus
ENSCPOG00000014680	CMSS1	100	81.362	ENSJJAG00000014894	Cmss1	100	81.362	Jaculus_jaculus
ENSCPOG00000014680	CMSS1	72	55.941	ENSKMAG00000002390	cmss1	80	55.500	Kryptolebias_marmoratus
ENSCPOG00000014680	CMSS1	72	59.113	ENSLBEG00000006298	cmss1	82	58.706	Labrus_bergylta
ENSCPOG00000014680	CMSS1	82	66.957	ENSLACG00000009293	CMSS1	100	66.957	Latimeria_chalumnae
ENSCPOG00000014680	CMSS1	100	52.465	ENSLOCG00000009391	cmss1	100	52.465	Lepisosteus_oculatus
ENSCPOG00000014680	CMSS1	82	89.035	ENSLAFG00000017509	CMSS1	100	89.035	Loxodonta_africana
ENSCPOG00000014680	CMSS1	100	87.097	ENSMFAG00000045006	CMSS1	100	87.097	Macaca_fascicularis
ENSCPOG00000014680	CMSS1	100	86.738	ENSMMUG00000002939	CMSS1	97	91.284	Macaca_mulatta
ENSCPOG00000014680	CMSS1	100	86.738	ENSMNEG00000031315	CMSS1	100	86.738	Macaca_nemestrina
ENSCPOG00000014680	CMSS1	100	87.097	ENSMLEG00000033660	CMSS1	100	87.097	Mandrillus_leucophaeus
ENSCPOG00000014680	CMSS1	100	53.401	ENSMAMG00000017176	cmss1	100	54.138	Mastacembelus_armatus
ENSCPOG00000014680	CMSS1	100	51.546	ENSMZEG00005021886	cmss1	100	52.577	Maylandia_zebra
ENSCPOG00000014680	CMSS1	82	68.860	ENSMGAG00000014360	CMSS1	100	68.860	Meleagris_gallopavo
ENSCPOG00000014680	CMSS1	100	58.423	ENSMAUG00000020609	Cmss1	100	59.286	Mesocricetus_auratus
ENSCPOG00000014680	CMSS1	100	86.380	ENSMICG00000048977	CMSS1	100	86.380	Microcebus_murinus
ENSCPOG00000014680	CMSS1	100	79.211	ENSMOCG00000021937	Cmss1	100	79.211	Microtus_ochrogaster
ENSCPOG00000014680	CMSS1	72	62.376	ENSMMOG00000019794	cmss1	83	62.000	Mola_mola
ENSCPOG00000014680	CMSS1	92	73.152	ENSMODG00000002275	CMSS1	97	73.152	Monodelphis_domestica
ENSCPOG00000014680	CMSS1	100	53.265	ENSMALG00000004250	cmss1	100	53.265	Monopterus_albus
ENSCPOG00000014680	CMSS1	100	80.357	MGP_CAROLIEiJ_G0020824	Cmss1	100	80.357	Mus_caroli
ENSCPOG00000014680	CMSS1	100	81.429	ENSMUSG00000022748	Cmss1	100	81.429	Mus_musculus
ENSCPOG00000014680	CMSS1	100	80.000	MGP_PahariEiJ_G0016524	Cmss1	100	80.000	Mus_pahari
ENSCPOG00000014680	CMSS1	100	81.071	MGP_SPRETEiJ_G0021724	Cmss1	100	81.071	Mus_spretus
ENSCPOG00000014680	CMSS1	87	91.393	ENSMPUG00000011324	CMSS1	99	89.494	Mustela_putorius_furo
ENSCPOG00000014680	CMSS1	92	86.923	ENSMLUG00000001131	CMSS1	99	86.923	Myotis_lucifugus
ENSCPOG00000014680	CMSS1	100	82.079	ENSNGAG00000020316	Cmss1	100	82.079	Nannospalax_galili
ENSCPOG00000014680	CMSS1	100	51.701	ENSNBRG00000003095	cmss1	100	52.234	Neolamprologus_brichardi
ENSCPOG00000014680	CMSS1	100	87.814	ENSNLEG00000034172	CMSS1	100	87.814	Nomascus_leucogenys
ENSCPOG00000014680	CMSS1	82	65.351	ENSMEUG00000014505	CMSS1	100	65.351	Notamacropus_eugenii
ENSCPOG00000014680	CMSS1	100	87.097	ENSOPRG00000002986	CMSS1	100	87.097	Ochotona_princeps
ENSCPOG00000014680	CMSS1	100	83.630	ENSODEG00000003558	-	100	83.630	Octodon_degus
ENSCPOG00000014680	CMSS1	100	90.681	ENSODEG00000005226	-	100	90.681	Octodon_degus
ENSCPOG00000014680	CMSS1	100	73.118	ENSODEG00000009446	-	100	73.118	Octodon_degus
ENSCPOG00000014680	CMSS1	100	79.211	ENSODEG00000001853	-	100	79.211	Octodon_degus
ENSCPOG00000014680	CMSS1	72	61.881	ENSONIG00000006678	cmss1	77	61.500	Oreochromis_niloticus
ENSCPOG00000014680	CMSS1	92	71.154	ENSOANG00000007529	CMSS1	100	75.107	Ornithorhynchus_anatinus
ENSCPOG00000014680	CMSS1	96	83.456	ENSOCUG00000025366	CMSS1	99	83.456	Oryctolagus_cuniculus
ENSCPOG00000014680	CMSS1	100	51.839	ENSORLG00000020340	cmss1	100	56.643	Oryzias_latipes
ENSCPOG00000014680	CMSS1	82	55.895	ENSORLG00020012235	cmss1	85	58.000	Oryzias_latipes_hni
ENSCPOG00000014680	CMSS1	72	58.416	ENSORLG00015015551	cmss1	75	58.000	Oryzias_latipes_hsok
ENSCPOG00000014680	CMSS1	100	54.138	ENSOMEG00000012555	cmss1	100	54.639	Oryzias_melastigma
ENSCPOG00000014680	CMSS1	82	90.789	ENSOGAG00000002045	CMSS1	100	90.789	Otolemur_garnettii
ENSCPOG00000014680	CMSS1	96	84.701	ENSOARG00000017899	CMSS1	90	84.701	Ovis_aries
ENSCPOG00000014680	CMSS1	92	87.209	ENSPPAG00000038515	CMSS1	95	87.209	Pan_paniscus
ENSCPOG00000014680	CMSS1	100	89.247	ENSPPRG00000016767	CMSS1	100	89.247	Panthera_pardus
ENSCPOG00000014680	CMSS1	100	88.530	ENSPTIG00000018274	CMSS1	100	88.530	Panthera_tigris_altaica
ENSCPOG00000014680	CMSS1	100	86.022	ENSPTRG00000015157	CMSS1	100	87.755	Pan_troglodytes
ENSCPOG00000014680	CMSS1	92	85.659	ENSPANG00000019980	CMSS1	99	85.659	Papio_anubis
ENSCPOG00000014680	CMSS1	91	56.506	ENSPKIG00000012609	cmss1	97	57.736	Paramormyrops_kingsleyae
ENSCPOG00000014680	CMSS1	82	72.489	ENSPSIG00000003849	CMSS1	100	72.489	Pelodiscus_sinensis
ENSCPOG00000014680	CMSS1	72	63.054	ENSPMGG00000010286	cmss1	86	62.687	Periophthalmus_magnuspinnatus
ENSCPOG00000014680	CMSS1	100	79.643	ENSPEMG00000016384	Cmss1	100	79.643	Peromyscus_maniculatus_bairdii
ENSCPOG00000014680	CMSS1	73	53.922	ENSPMAG00000001146	cmss1	98	54.000	Petromyzon_marinus
ENSCPOG00000014680	CMSS1	89	72.581	ENSPCIG00000015656	CMSS1	97	70.769	Phascolarctos_cinereus
ENSCPOG00000014680	CMSS1	100	54.007	ENSPFOG00000016849	cmss1	100	55.208	Poecilia_formosa
ENSCPOG00000014680	CMSS1	100	53.659	ENSPLAG00000008323	cmss1	100	54.861	Poecilia_latipinna
ENSCPOG00000014680	CMSS1	100	55.017	ENSPMEG00000021020	cmss1	100	54.514	Poecilia_mexicana
ENSCPOG00000014680	CMSS1	85	59.751	ENSPREG00000007618	cmss1	82	59.167	Poecilia_reticulata
ENSCPOG00000014680	CMSS1	100	86.738	ENSPPYG00000013606	CMSS1	100	86.738	Pongo_abelii
ENSCPOG00000014680	CMSS1	100	87.097	ENSPCOG00000020035	CMSS1	100	87.097	Propithecus_coquereli
ENSCPOG00000014680	CMSS1	100	74.552	ENSPVAG00000017031	CMSS1	100	74.552	Pteropus_vampyrus
ENSCPOG00000014680	CMSS1	91	51.698	ENSPNYG00000013428	cmss1	97	52.830	Pundamilia_nyererei
ENSCPOG00000014680	CMSS1	100	49.834	ENSPNAG00000007912	cmss1	100	50.676	Pygocentrus_nattereri
ENSCPOG00000014680	CMSS1	92	79.151	ENSRNOG00000027888	Cmss1	99	79.151	Rattus_norvegicus
ENSCPOG00000014680	CMSS1	100	87.455	ENSRBIG00000037931	CMSS1	100	87.455	Rhinopithecus_bieti
ENSCPOG00000014680	CMSS1	100	87.455	ENSRROG00000042910	CMSS1	100	87.455	Rhinopithecus_roxellana
ENSCPOG00000014680	CMSS1	100	81.786	ENSSBOG00000030980	CMSS1	99	87.259	Saimiri_boliviensis_boliviensis
ENSCPOG00000014680	CMSS1	89	72.222	ENSSHAG00000009321	CMSS1	98	73.092	Sarcophilus_harrisii
ENSCPOG00000014680	CMSS1	100	53.741	ENSSFOG00015001509	cmss1	100	55.517	Scleropages_formosus
ENSCPOG00000014680	CMSS1	100	55.631	ENSSMAG00000001653	cmss1	100	54.452	Scophthalmus_maximus
ENSCPOG00000014680	CMSS1	100	54.167	ENSSDUG00000007719	cmss1	100	54.983	Seriola_dumerili
ENSCPOG00000014680	CMSS1	74	65.217	ENSSLDG00000012300	cmss1	80	58.031	Seriola_lalandi_dorsalis
ENSCPOG00000014680	CMSS1	100	73.929	ENSSARG00000003584	CMSS1	100	73.929	Sorex_araneus
ENSCPOG00000014680	CMSS1	81	70.354	ENSSPUG00000003865	CMSS1	100	70.354	Sphenodon_punctatus
ENSCPOG00000014680	CMSS1	74	65.049	ENSSPAG00000019182	cmss1	82	55.056	Stegastes_partitus
ENSCPOG00000014680	CMSS1	100	88.530	ENSSSCG00000011970	CMSS1	100	88.530	Sus_scrofa
ENSCPOG00000014680	CMSS1	82	67.249	ENSTGUG00000013635	CMSS1	100	67.249	Taeniopygia_guttata
ENSCPOG00000014680	CMSS1	100	53.472	ENSTRUG00000015265	cmss1	100	52.817	Takifugu_rubripes
ENSCPOG00000014680	CMSS1	72	56.931	ENSTNIG00000002880	cmss1	72	56.500	Tetraodon_nigroviridis
ENSCPOG00000014680	CMSS1	100	60.000	ENSTBEG00000016722	CMSS1	100	60.000	Tupaia_belangeri
ENSCPOG00000014680	CMSS1	100	86.380	ENSTTRG00000001562	CMSS1	100	86.380	Tursiops_truncatus
ENSCPOG00000014680	CMSS1	97	84.249	ENSUAMG00000024209	CMSS1	100	92.377	Ursus_americanus
ENSCPOG00000014680	CMSS1	96	85.502	ENSUMAG00000001983	CMSS1	99	87.597	Ursus_maritimus
ENSCPOG00000014680	CMSS1	100	67.025	ENSVPAG00000000263	CMSS1	100	67.025	Vicugna_pacos
ENSCPOG00000014680	CMSS1	77	90.741	ENSVVUG00000007776	-	85	90.741	Vulpes_vulpes
ENSCPOG00000014680	CMSS1	88	90.204	ENSVVUG00000021647	-	99	90.204	Vulpes_vulpes
ENSCPOG00000014680	CMSS1	100	57.597	ENSXETG00000011858	cmss1	100	57.244	Xenopus_tropicalis
ENSCPOG00000014680	CMSS1	75	63.942	ENSXCOG00000018724	cmss1	68	63.500	Xiphophorus_couchianus
ENSCPOG00000014680	CMSS1	75	63.942	ENSXMAG00000011243	cmss1	75	63.500	Xiphophorus_maculatus