EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCPOG00000014878 (Gene tree)
Gene ID: 100715692
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Plus strand
Length: 216875 bases
Position: chrDS562887.1:20191154-20408028
Accession: 100715692
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000013406	EST1	PF10374.9	2.7e-15	1	1
ENSCPOP00000013406	EST1_DNA_bind	PF10373.9	9.7e-60	1	1
ENSCPOP00000031291	EST1_DNA_bind	PF10373.9	6.1e-11	1	1
ENSCPOP00000013406	PIN_4	PF13638.6	2.4e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000042967	SMG6-202	708	-	ENSCPOP00000031291	236 (aa)	-	A0A286Y0F1
ENSCPOT00000015023	SMG6-201	4263	XM_005003546	ENSCPOP00000013406	1420 (aa)	XP_005003603	H0VS20

Gene Model

Click here to download ENSCPOG00000014878's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000014878's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000014878	SMG6	97	93.421	ENSG00000070366	SMG6	100	97.065	Homo_sapiens
ENSCPOG00000014878	SMG6	92	56.769	ENSAPOG00000019448	smg6	74	54.631	Acanthochromis_polyacanthus
ENSCPOG00000014878	SMG6	100	90.634	ENSAMEG00000007632	SMG6	100	90.634	Ailuropoda_melanoleuca
ENSCPOG00000014878	SMG6	91	60.360	ENSACIG00000012997	smg6	98	49.241	Amphilophus_citrinellus
ENSCPOG00000014878	SMG6	92	56.332	ENSAOCG00000002630	smg6	74	54.396	Amphiprion_ocellaris
ENSCPOG00000014878	SMG6	92	56.769	ENSAPEG00000019101	smg6	74	54.553	Amphiprion_percula
ENSCPOG00000014878	SMG6	90	59.735	ENSATEG00000006483	smg6	75	53.217	Anabas_testudineus
ENSCPOG00000014878	SMG6	91	74.884	ENSACAG00000011783	SMG6	99	57.278	Anolis_carolinensis
ENSCPOG00000014878	SMG6	100	90.704	ENSANAG00000035760	SMG6	100	90.704	Aotus_nancymaae
ENSCPOG00000014878	SMG6	90	58.667	ENSACLG00000005288	smg6	82	53.623	Astatotilapia_calliptera
ENSCPOG00000014878	SMG6	90	58.636	ENSAMXG00000017326	smg6	99	49.483	Astyanax_mexicanus
ENSCPOG00000014878	SMG6	100	90.211	ENSBTAG00000000267	SMG6	100	90.211	Bos_taurus
ENSCPOG00000014878	SMG6	98	93.506	ENSCJAG00000001820	SMG6	100	90.704	Callithrix_jacchus
ENSCPOG00000014878	SMG6	100	90.634	ENSCAFG00000019260	SMG6	100	90.634	Canis_familiaris
ENSCPOG00000014878	SMG6	100	90.634	ENSCAFG00020009770	SMG6	100	90.634	Canis_lupus_dingo
ENSCPOG00000014878	SMG6	100	90.070	ENSCHIG00000021998	SMG6	100	90.070	Capra_hircus
ENSCPOG00000014878	SMG6	100	91.268	ENSTSYG00000003406	SMG6	100	96.869	Carlito_syrichta
ENSCPOG00000014878	SMG6	98	85.119	ENSCAPG00000016197	SMG6	99	92.882	Cavia_aperea
ENSCPOG00000014878	SMG6	100	90.704	ENSCCAG00000035801	SMG6	100	90.704	Cebus_capucinus
ENSCPOG00000014878	SMG6	100	90.423	ENSCATG00000031956	SMG6	100	90.423	Cercocebus_atys
ENSCPOG00000014878	SMG6	100	95.141	ENSCLAG00000006748	SMG6	100	95.141	Chinchilla_lanigera
ENSCPOG00000014878	SMG6	100	90.775	ENSCSAG00000013800	SMG6	100	90.775	Chlorocebus_sabaeus
ENSCPOG00000014878	SMG6	57	98.507	ENSCHOG00000005024	-	73	98.507	Choloepus_hoffmanni
ENSCPOG00000014878	SMG6	98	79.828	ENSCPBG00000020369	SMG6	100	71.478	Chrysemys_picta_bellii
ENSCPOG00000014878	SMG6	70	34.884	ENSCING00000010099	-	99	35.260	Ciona_intestinalis
ENSCPOG00000014878	SMG6	97	92.544	ENSCANG00000031764	SMG6	100	96.282	Colobus_angolensis_palliatus
ENSCPOG00000014878	SMG6	57	86.923	ENSCGRG00001019595	Smg6	100	86.923	Cricetulus_griseus_chok1gshd
ENSCPOG00000014878	SMG6	98	84.377	ENSCGRG00000007782	Smg6	100	84.377	Cricetulus_griseus_crigri
ENSCPOG00000014878	SMG6	95	56.780	ENSCSEG00000012757	smg6	90	51.437	Cynoglossus_semilaevis
ENSCPOG00000014878	SMG6	84	59.716	ENSCVAG00000012789	smg6	86	52.804	Cyprinodon_variegatus
ENSCPOG00000014878	SMG6	95	55.085	ENSDARG00000100481	smg6	91	54.874	Danio_rerio
ENSCPOG00000014878	SMG6	100	91.056	ENSDNOG00000048283	SMG6	100	91.056	Dasypus_novemcinctus
ENSCPOG00000014878	SMG6	96	97.192	ENSDORG00000016614	Smg6	100	97.192	Dipodomys_ordii
ENSCPOG00000014878	SMG6	98	92.641	ENSETEG00000016790	SMG6	93	97.619	Echinops_telfairi
ENSCPOG00000014878	SMG6	91	49.541	ENSEBUG00000005059	smg6	71	49.758	Eptatretus_burgeri
ENSCPOG00000014878	SMG6	99	91.114	ENSEASG00005009318	SMG6	99	91.114	Equus_asinus_asinus
ENSCPOG00000014878	SMG6	99	90.832	ENSECAG00000006519	SMG6	99	90.832	Equus_caballus
ENSCPOG00000014878	SMG6	100	79.789	ENSEEUG00000003493	SMG6	100	79.789	Erinaceus_europaeus
ENSCPOG00000014878	SMG6	85	62.857	ENSELUG00000005934	smg6	67	55.451	Esox_lucius
ENSCPOG00000014878	SMG6	100	91.690	ENSFCAG00000028817	SMG6	100	91.690	Felis_catus
ENSCPOG00000014878	SMG6	98	79.654	ENSFALG00000006538	SMG6	100	70.993	Ficedula_albicollis
ENSCPOG00000014878	SMG6	100	94.538	ENSFDAG00000015106	SMG6	100	93.944	Fukomys_damarensis
ENSCPOG00000014878	SMG6	84	57.346	ENSFHEG00000013282	smg6	75	53.518	Fundulus_heteroclitus
ENSCPOG00000014878	SMG6	83	57.416	ENSGMOG00000019077	smg6	68	65.581	Gadus_morhua
ENSCPOG00000014878	SMG6	98	80.087	ENSGALG00000003108	SMG6	98	70.885	Gallus_gallus
ENSCPOG00000014878	SMG6	85	58.216	ENSGAFG00000000379	smg6	74	53.085	Gambusia_affinis
ENSCPOG00000014878	SMG6	98	54.098	ENSGACG00000020521	smg6	100	52.889	Gasterosteus_aculeatus
ENSCPOG00000014878	SMG6	98	78.970	ENSGAGG00000025617	SMG6	100	71.023	Gopherus_agassizii
ENSCPOG00000014878	SMG6	100	91.127	ENSGGOG00000017156	SMG6	100	91.127	Gorilla_gorilla
ENSCPOG00000014878	SMG6	90	58.667	ENSHBUG00000021311	smg6	77	53.887	Haplochromis_burtoni
ENSCPOG00000014878	SMG6	99	95.359	ENSHGLG00000012882	SMG6	99	95.359	Heterocephalus_glaber_female
ENSCPOG00000014878	SMG6	99	95.359	ENSHGLG00100017815	SMG6	99	95.359	Heterocephalus_glaber_male
ENSCPOG00000014878	SMG6	92	58.772	ENSHCOG00000008761	smg6	83	58.095	Hippocampus_comes
ENSCPOG00000014878	SMG6	89	59.813	ENSIPUG00000012493	smg6	76	54.160	Ictalurus_punctatus
ENSCPOG00000014878	SMG6	99	94.068	ENSSTOG00000028127	SMG6	99	94.068	Ictidomys_tridecemlineatus
ENSCPOG00000014878	SMG6	79	88.146	ENSJJAG00000015367	Smg6	95	86.234	Jaculus_jaculus
ENSCPOG00000014878	SMG6	98	54.733	ENSKMAG00000000279	smg6	76	53.982	Kryptolebias_marmoratus
ENSCPOG00000014878	SMG6	88	57.078	ENSLBEG00000002184	smg6	76	52.445	Labrus_bergylta
ENSCPOG00000014878	SMG6	95	79.911	ENSLACG00000003276	SMG6	100	80.000	Latimeria_chalumnae
ENSCPOG00000014878	SMG6	55	56.053	ENSLACG00000000806	-	98	58.151	Latimeria_chalumnae
ENSCPOG00000014878	SMG6	98	64.286	ENSLOCG00000006448	smg6	99	53.687	Lepisosteus_oculatus
ENSCPOG00000014878	SMG6	97	93.860	ENSLAFG00000001261	SMG6	100	90.563	Loxodonta_africana
ENSCPOG00000014878	SMG6	100	90.775	ENSMFAG00000003394	SMG6	100	90.775	Macaca_fascicularis
ENSCPOG00000014878	SMG6	100	90.845	ENSMMUG00000023161	SMG6	100	90.845	Macaca_mulatta
ENSCPOG00000014878	SMG6	97	92.544	ENSMNEG00000044592	SMG6	100	85.955	Macaca_nemestrina
ENSCPOG00000014878	SMG6	97	92.544	ENSMLEG00000029353	SMG6	100	96.429	Mandrillus_leucophaeus
ENSCPOG00000014878	SMG6	84	60.952	ENSMAMG00000020119	smg6	80	54.398	Mastacembelus_armatus
ENSCPOG00000014878	SMG6	90	58.667	ENSMZEG00005024736	smg6	76	53.647	Maylandia_zebra
ENSCPOG00000014878	SMG6	52	90.244	ENSMGAG00000017200	-	100	85.559	Meleagris_gallopavo
ENSCPOG00000014878	SMG6	74	64.353	ENSMGAG00000005401	-	99	64.353	Meleagris_gallopavo
ENSCPOG00000014878	SMG6	95	94.643	ENSMAUG00000017203	-	97	94.643	Mesocricetus_auratus
ENSCPOG00000014878	SMG6	100	92.535	ENSMICG00000012913	SMG6	100	92.535	Microcebus_murinus
ENSCPOG00000014878	SMG6	99	92.735	ENSMOCG00000019924	-	99	92.735	Microtus_ochrogaster
ENSCPOG00000014878	SMG6	100	47.189	ENSMMOG00000010883	smg6	100	48.059	Mola_mola
ENSCPOG00000014878	SMG6	83	44.949	ENSMODG00000024410	-	99	41.487	Monodelphis_domestica
ENSCPOG00000014878	SMG6	73	50.568	ENSMODG00000024395	-	99	40.900	Monodelphis_domestica
ENSCPOG00000014878	SMG6	98	90.476	ENSMODG00000010622	SMG6	100	83.556	Monodelphis_domestica
ENSCPOG00000014878	SMG6	73	49.432	ENSMODG00000024460	-	99	42.074	Monodelphis_domestica
ENSCPOG00000014878	SMG6	73	47.222	ENSMODG00000024463	-	99	41.961	Monodelphis_domestica
ENSCPOG00000014878	SMG6	84	59.242	ENSMALG00000001106	smg6	73	54.588	Monopterus_albus
ENSCPOG00000014878	SMG6	99	93.249	MGP_CAROLIEiJ_G0016729	Smg6	99	93.249	Mus_caroli
ENSCPOG00000014878	SMG6	99	93.249	ENSMUSG00000038290	Smg6	99	93.249	Mus_musculus
ENSCPOG00000014878	SMG6	99	93.671	MGP_PahariEiJ_G0017866	Smg6	99	93.671	Mus_pahari
ENSCPOG00000014878	SMG6	99	93.249	MGP_SPRETEiJ_G0017572	Smg6	99	93.249	Mus_spretus
ENSCPOG00000014878	SMG6	100	90.915	ENSMPUG00000013046	SMG6	100	90.915	Mustela_putorius_furo
ENSCPOG00000014878	SMG6	100	90.423	ENSMLUG00000005739	SMG6	100	90.423	Myotis_lucifugus
ENSCPOG00000014878	SMG6	99	92.373	ENSNGAG00000007287	Smg6	99	92.373	Nannospalax_galili
ENSCPOG00000014878	SMG6	93	57.759	ENSNBRG00000009511	smg6	83	53.359	Neolamprologus_brichardi
ENSCPOG00000014878	SMG6	97	92.982	ENSNLEG00000017171	SMG6	100	96.869	Nomascus_leucogenys
ENSCPOG00000014878	SMG6	98	89.610	ENSMEUG00000015804	SMG6	100	79.756	Notamacropus_eugenii
ENSCPOG00000014878	SMG6	73	88.953	ENSOPRG00000000579	SMG6	85	97.895	Ochotona_princeps
ENSCPOG00000014878	SMG6	96	97.508	ENSODEG00000008038	SMG6	100	97.508	Octodon_degus
ENSCPOG00000014878	SMG6	100	50.499	ENSONIG00000005594	smg6	100	51.340	Oreochromis_niloticus
ENSCPOG00000014878	SMG6	100	90.928	ENSOCUG00000013018	SMG6	100	90.928	Oryctolagus_cuniculus
ENSCPOG00000014878	SMG6	83	59.330	ENSORLG00000003317	smg6	74	54.324	Oryzias_latipes
ENSCPOG00000014878	SMG6	83	58.852	ENSORLG00020015343	smg6	74	54.022	Oryzias_latipes_hni
ENSCPOG00000014878	SMG6	83	59.330	ENSORLG00015020454	smg6	74	54.288	Oryzias_latipes_hsok
ENSCPOG00000014878	SMG6	83	59.330	ENSOMEG00000010838	smg6	75	53.512	Oryzias_melastigma
ENSCPOG00000014878	SMG6	100	91.485	ENSOGAG00000004483	SMG6	100	91.485	Otolemur_garnettii
ENSCPOG00000014878	SMG6	97	92.982	ENSOARG00000015076	SMG6	100	89.827	Ovis_aries
ENSCPOG00000014878	SMG6	100	91.127	ENSPPAG00000043296	SMG6	100	91.127	Pan_paniscus
ENSCPOG00000014878	SMG6	100	91.761	ENSPPRG00000014581	SMG6	100	91.761	Panthera_pardus
ENSCPOG00000014878	SMG6	97	93.421	ENSPTIG00000008925	SMG6	100	97.456	Panthera_tigris_altaica
ENSCPOG00000014878	SMG6	100	91.197	ENSPTRG00000008544	SMG6	100	97.065	Pan_troglodytes
ENSCPOG00000014878	SMG6	100	90.634	ENSPANG00000024588	SMG6	100	90.634	Papio_anubis
ENSCPOG00000014878	SMG6	98	77.922	ENSPSIG00000006660	SMG6	96	69.711	Pelodiscus_sinensis
ENSCPOG00000014878	SMG6	98	60.591	ENSPMGG00000000844	smg6	100	60.591	Periophthalmus_magnuspinnatus
ENSCPOG00000014878	SMG6	100	91.268	ENSPEMG00000020707	Smg6	96	95.982	Peromyscus_maniculatus_bairdii
ENSCPOG00000014878	SMG6	100	50.336	ENSPFOG00000012035	smg6	100	50.202	Poecilia_formosa
ENSCPOG00000014878	SMG6	89	58.559	ENSPLAG00000017660	smg6	74	53.145	Poecilia_latipinna
ENSCPOG00000014878	SMG6	89	59.459	ENSPMEG00000000258	smg6	74	53.459	Poecilia_mexicana
ENSCPOG00000014878	SMG6	83	61.058	ENSPREG00000010066	smg6	74	53.249	Poecilia_reticulata
ENSCPOG00000014878	SMG6	100	86.456	ENSPPYG00000007790	SMG6	100	86.456	Pongo_abelii
ENSCPOG00000014878	SMG6	100	86.197	ENSPCAG00000000552	SMG6	100	86.197	Procavia_capensis
ENSCPOG00000014878	SMG6	100	92.254	ENSPCOG00000020925	SMG6	100	92.254	Propithecus_coquereli
ENSCPOG00000014878	SMG6	97	92.105	ENSPVAG00000002159	SMG6	86	100.000	Pteropus_vampyrus
ENSCPOG00000014878	SMG6	93	57.759	ENSPNYG00000024151	smg6	82	55.512	Pundamilia_nyererei
ENSCPOG00000014878	SMG6	93	58.696	ENSPNAG00000015480	smg6	74	62.883	Pygocentrus_nattereri
ENSCPOG00000014878	SMG6	100	90.493	ENSRNOG00000003041	Smg6	100	90.493	Rattus_norvegicus
ENSCPOG00000014878	SMG6	100	90.845	ENSRBIG00000024746	SMG6	100	90.845	Rhinopithecus_bieti
ENSCPOG00000014878	SMG6	100	90.915	ENSRROG00000030423	SMG6	100	95.890	Rhinopithecus_roxellana
ENSCPOG00000014878	SMG6	100	90.563	ENSSBOG00000022518	SMG6	100	88.873	Saimiri_boliviensis_boliviensis
ENSCPOG00000014878	SMG6	98	89.177	ENSSHAG00000010045	SMG6	98	83.513	Sarcophilus_harrisii
ENSCPOG00000014878	SMG6	96	39.827	ENSSHAG00000000380	-	99	39.328	Sarcophilus_harrisii
ENSCPOG00000014878	SMG6	98	59.109	ENSSFOG00015005436	smg6	70	56.535	Scleropages_formosus
ENSCPOG00000014878	SMG6	88	58.108	ENSSMAG00000019777	smg6	73	53.870	Scophthalmus_maximus
ENSCPOG00000014878	SMG6	84	59.906	ENSSDUG00000016412	smg6	81	51.174	Seriola_dumerili
ENSCPOG00000014878	SMG6	84	59.906	ENSSLDG00000020747	smg6	85	50.294	Seriola_lalandi_dorsalis
ENSCPOG00000014878	SMG6	98	79.828	ENSSPUG00000007152	SMG6	99	68.689	Sphenodon_punctatus
ENSCPOG00000014878	SMG6	92	57.205	ENSSPAG00000015633	smg6	74	54.351	Stegastes_partitus
ENSCPOG00000014878	SMG6	100	90.218	ENSSSCG00000017826	SMG6	100	90.218	Sus_scrofa
ENSCPOG00000014878	SMG6	98	81.385	ENSTGUG00000005836	SMG6	100	71.459	Taeniopygia_guttata
ENSCPOG00000014878	SMG6	100	47.395	ENSTRUG00000000358	smg6	100	47.739	Takifugu_rubripes
ENSCPOG00000014878	SMG6	100	49.144	ENSTNIG00000016164	smg6	100	49.603	Tetraodon_nigroviridis
ENSCPOG00000014878	SMG6	98	98.529	ENSTBEG00000011424	SMG6	100	87.324	Tupaia_belangeri
ENSCPOG00000014878	SMG6	97	92.544	ENSTTRG00000001175	SMG6	91	90.288	Tursiops_truncatus
ENSCPOG00000014878	SMG6	100	91.005	ENSUAMG00000025152	SMG6	100	90.443	Ursus_americanus
ENSCPOG00000014878	SMG6	97	92.544	ENSUMAG00000009306	SMG6	100	91.126	Ursus_maritimus
ENSCPOG00000014878	SMG6	85	96.296	ENSVPAG00000000225	SMG6	88	96.296	Vicugna_pacos
ENSCPOG00000014878	SMG6	100	90.634	ENSVVUG00000021727	SMG6	100	90.634	Vulpes_vulpes
ENSCPOG00000014878	SMG6	98	59.366	ENSXETG00000023799	SMG6	100	59.184	Xenopus_tropicalis
ENSCPOG00000014878	SMG6	83	61.881	ENSXCOG00000009867	smg6	74	54.400	Xiphophorus_couchianus
ENSCPOG00000014878	SMG6	83	60.096	ENSXMAG00000010321	smg6	74	53.481	Xiphophorus_maculatus