EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPOG00000014971 (Gene tree)
Gene ID: 100712660
Gene Symbol: RPUSD4
Alias: FLJ14494
Full Name: RNA pseudouridine synthase D4
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Plus strand
Length: 8675 bases
Position: chrDS562874.1:19973249-19981923
Accession: 100712660
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000013493	PseudoU_synth_2	PF00849.22	7.2e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000015117	RPUSD4-201	2268	XM_003472682	ENSCPOP00000013493	375 (aa)	XP_003472730	H0VS98

Gene Model

Click here to download ENSCPOG00000014971's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000014971's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPOG00000014971	RPUSD4	67	30.882	ENSCPOG00000037956	RPUSD3	76	30.389

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000014971	RPUSD4	100	79.310	ENSG00000165526	RPUSD4	100	79.310	Homo_sapiens
ENSCPOG00000014971	RPUSD4	96	50.407	ENSAPOG00000011024	rpusd4	92	50.407	Acanthochromis_polyacanthus
ENSCPOG00000014971	RPUSD4	100	80.637	ENSAMEG00000000127	-	100	80.637	Ailuropoda_melanoleuca
ENSCPOG00000014971	RPUSD4	84	78.169	ENSAMEG00000005953	-	100	78.169	Ailuropoda_melanoleuca
ENSCPOG00000014971	RPUSD4	91	47.550	ENSACIG00000003533	rpusd4	99	47.550	Amphilophus_citrinellus
ENSCPOG00000014971	RPUSD4	93	51.989	ENSAOCG00000015409	rpusd4	87	51.989	Amphiprion_ocellaris
ENSCPOG00000014971	RPUSD4	93	51.989	ENSAPEG00000018935	rpusd4	87	51.989	Amphiprion_percula
ENSCPOG00000014971	RPUSD4	86	51.976	ENSATEG00000008059	rpusd4	81	51.976	Anabas_testudineus
ENSCPOG00000014971	RPUSD4	74	59.857	ENSAPLG00000013250	RPUSD4	99	58.644	Anas_platyrhynchos
ENSCPOG00000014971	RPUSD4	97	59.621	ENSACAG00000000189	RPUSD4	100	59.621	Anolis_carolinensis
ENSCPOG00000014971	RPUSD4	99	79.570	ENSANAG00000024050	RPUSD4	100	79.570	Aotus_nancymaae
ENSCPOG00000014971	RPUSD4	93	49.716	ENSACLG00000020996	rpusd4	90	49.716	Astatotilapia_calliptera
ENSCPOG00000014971	RPUSD4	90	50.432	ENSAMXG00000031479	rpusd4	95	51.183	Astyanax_mexicanus
ENSCPOG00000014971	RPUSD4	98	77.358	ENSBTAG00000020900	RPUSD4	98	77.358	Bos_taurus
ENSCPOG00000014971	RPUSD4	98	79.189	ENSCJAG00000042850	RPUSD4	93	79.189	Callithrix_jacchus
ENSCPOG00000014971	RPUSD4	100	79.365	ENSCAFG00000010488	RPUSD4	100	79.365	Canis_familiaris
ENSCPOG00000014971	RPUSD4	100	79.365	ENSCAFG00020010621	RPUSD4	100	79.365	Canis_lupus_dingo
ENSCPOG00000014971	RPUSD4	98	79.032	ENSCHIG00000009975	RPUSD4	98	79.032	Capra_hircus
ENSCPOG00000014971	RPUSD4	100	82.979	ENSTSYG00000008456	RPUSD4	100	82.979	Carlito_syrichta
ENSCPOG00000014971	RPUSD4	69	96.124	ENSCAPG00000006040	RPUSD4	100	96.124	Cavia_aperea
ENSCPOG00000014971	RPUSD4	99	79.839	ENSCCAG00000027838	RPUSD4	100	79.839	Cebus_capucinus
ENSCPOG00000014971	RPUSD4	100	79.576	ENSCATG00000041570	RPUSD4	100	79.576	Cercocebus_atys
ENSCPOG00000014971	RPUSD4	100	90.186	ENSCLAG00000016553	RPUSD4	100	90.186	Chinchilla_lanigera
ENSCPOG00000014971	RPUSD4	100	79.045	ENSCSAG00000002274	RPUSD4	100	79.045	Chlorocebus_sabaeus
ENSCPOG00000014971	RPUSD4	75	80.919	ENSCHOG00000010249	RPUSD4	100	80.919	Choloepus_hoffmanni
ENSCPOG00000014971	RPUSD4	77	66.782	ENSCPBG00000011175	RPUSD4	99	66.782	Chrysemys_picta_bellii
ENSCPOG00000014971	RPUSD4	88	38.596	ENSCSAVG00000000872	-	66	38.596	Ciona_savignyi
ENSCPOG00000014971	RPUSD4	100	78.515	ENSCANG00000039684	RPUSD4	100	78.515	Colobus_angolensis_palliatus
ENSCPOG00000014971	RPUSD4	100	81.167	ENSCGRG00001024141	Rpusd4	100	81.167	Cricetulus_griseus_chok1gshd
ENSCPOG00000014971	RPUSD4	100	81.167	ENSCGRG00000014415	Rpusd4	100	81.167	Cricetulus_griseus_crigri
ENSCPOG00000014971	RPUSD4	88	51.183	ENSCVAG00000008761	rpusd4	86	51.183	Cyprinodon_variegatus
ENSCPOG00000014971	RPUSD4	88	51.479	ENSCVAG00000000392	rpusd4	95	51.479	Cyprinodon_variegatus
ENSCPOG00000014971	RPUSD4	80	53.770	ENSDARG00000012674	rpusd4	91	52.454	Danio_rerio
ENSCPOG00000014971	RPUSD4	100	76.393	ENSDNOG00000020026	RPUSD4	100	76.393	Dasypus_novemcinctus
ENSCPOG00000014971	RPUSD4	98	78.706	ENSDORG00000016717	Rpusd4	98	78.706	Dipodomys_ordii
ENSCPOG00000014971	RPUSD4	98	77.358	ENSETEG00000013953	RPUSD4	99	77.358	Echinops_telfairi
ENSCPOG00000014971	RPUSD4	100	81.432	ENSEASG00005022982	RPUSD4	100	81.432	Equus_asinus_asinus
ENSCPOG00000014971	RPUSD4	100	81.698	ENSECAG00000000557	RPUSD4	100	81.698	Equus_caballus
ENSCPOG00000014971	RPUSD4	81	77.540	ENSEEUG00000014036	RPUSD4	81	77.540	Erinaceus_europaeus
ENSCPOG00000014971	RPUSD4	91	53.867	ENSELUG00000008075	rpusd4	95	53.867	Esox_lucius
ENSCPOG00000014971	RPUSD4	100	78.515	ENSFCAG00000029789	RPUSD4	100	78.515	Felis_catus
ENSCPOG00000014971	RPUSD4	87	58.006	ENSFALG00000005171	RPUSD4	97	58.006	Ficedula_albicollis
ENSCPOG00000014971	RPUSD4	100	85.676	ENSFDAG00000014307	RPUSD4	100	85.676	Fukomys_damarensis
ENSCPOG00000014971	RPUSD4	92	50.282	ENSFHEG00000004329	rpusd4	91	50.282	Fundulus_heteroclitus
ENSCPOG00000014971	RPUSD4	85	51.852	ENSGMOG00000017726	rpusd4	96	51.852	Gadus_morhua
ENSCPOG00000014971	RPUSD4	75	62.057	ENSGALG00000024326	RPUSD4	95	57.267	Gallus_gallus
ENSCPOG00000014971	RPUSD4	92	47.632	ENSGAFG00000021559	rpusd4	91	47.632	Gambusia_affinis
ENSCPOG00000014971	RPUSD4	89	50.442	ENSGACG00000001657	rpusd4	100	50.588	Gasterosteus_aculeatus
ENSCPOG00000014971	RPUSD4	89	62.018	ENSGAGG00000000132	RPUSD4	94	62.018	Gopherus_agassizii
ENSCPOG00000014971	RPUSD4	100	79.045	ENSGGOG00000016494	RPUSD4	100	79.045	Gorilla_gorilla
ENSCPOG00000014971	RPUSD4	93	49.716	ENSHBUG00000022838	rpusd4	90	49.716	Haplochromis_burtoni
ENSCPOG00000014971	RPUSD4	100	87.268	ENSHGLG00000002285	RPUSD4	100	87.268	Heterocephalus_glaber_female
ENSCPOG00000014971	RPUSD4	100	87.268	ENSHGLG00100006385	RPUSD4	100	87.268	Heterocephalus_glaber_male
ENSCPOG00000014971	RPUSD4	89	50.716	ENSHCOG00000006612	rpusd4	89	50.716	Hippocampus_comes
ENSCPOG00000014971	RPUSD4	91	54.545	ENSIPUG00000023879	rusd4	90	54.545	Ictalurus_punctatus
ENSCPOG00000014971	RPUSD4	97	83.471	ENSSTOG00000025280	RPUSD4	100	83.471	Ictidomys_tridecemlineatus
ENSCPOG00000014971	RPUSD4	99	82.432	ENSJJAG00000018673	Rpusd4	100	82.432	Jaculus_jaculus
ENSCPOG00000014971	RPUSD4	96	51.200	ENSKMAG00000021805	rpusd4	97	51.200	Kryptolebias_marmoratus
ENSCPOG00000014971	RPUSD4	86	53.333	ENSLBEG00000020394	rpusd4	92	53.333	Labrus_bergylta
ENSCPOG00000014971	RPUSD4	85	61.994	ENSLACG00000011028	RPUSD4	85	60.778	Latimeria_chalumnae
ENSCPOG00000014971	RPUSD4	91	47.536	ENSLOCG00000003124	rpusd4	91	47.536	Lepisosteus_oculatus
ENSCPOG00000014971	RPUSD4	100	77.926	ENSLAFG00000005211	RPUSD4	100	77.926	Loxodonta_africana
ENSCPOG00000014971	RPUSD4	100	80.106	ENSMFAG00000039513	RPUSD4	100	80.106	Macaca_fascicularis
ENSCPOG00000014971	RPUSD4	100	79.841	ENSMMUG00000007933	RPUSD4	100	79.841	Macaca_mulatta
ENSCPOG00000014971	RPUSD4	100	79.841	ENSMNEG00000027414	RPUSD4	100	79.841	Macaca_nemestrina
ENSCPOG00000014971	RPUSD4	100	79.576	ENSMLEG00000042461	RPUSD4	100	79.576	Mandrillus_leucophaeus
ENSCPOG00000014971	RPUSD4	92	47.753	ENSMAMG00000023839	rpusd4	92	47.753	Mastacembelus_armatus
ENSCPOG00000014971	RPUSD4	93	49.716	ENSMZEG00005011999	rpusd4	90	49.716	Maylandia_zebra
ENSCPOG00000014971	RPUSD4	74	60.357	ENSMGAG00000000840	RPUSD4	99	57.716	Meleagris_gallopavo
ENSCPOG00000014971	RPUSD4	100	79.045	ENSMAUG00000010280	Rpusd4	100	79.045	Mesocricetus_auratus
ENSCPOG00000014971	RPUSD4	100	81.432	ENSMICG00000015979	RPUSD4	100	81.432	Microcebus_murinus
ENSCPOG00000014971	RPUSD4	100	76.658	ENSMOCG00000000661	Rpusd4	100	76.658	Microtus_ochrogaster
ENSCPOG00000014971	RPUSD4	83	54.574	ENSMMOG00000021731	rpusd4	93	54.574	Mola_mola
ENSCPOG00000014971	RPUSD4	87	72.727	ENSMODG00000004521	RPUSD4	85	72.727	Monodelphis_domestica
ENSCPOG00000014971	RPUSD4	81	53.746	ENSMALG00000005839	rpusd4	97	52.632	Monopterus_albus
ENSCPOG00000014971	RPUSD4	100	77.719	MGP_CAROLIEiJ_G0031954	Rpusd4	100	77.719	Mus_caroli
ENSCPOG00000014971	RPUSD4	100	77.719	ENSMUSG00000032044	Rpusd4	100	77.719	Mus_musculus
ENSCPOG00000014971	RPUSD4	100	78.515	MGP_PahariEiJ_G0014819	Rpusd4	100	78.515	Mus_pahari
ENSCPOG00000014971	RPUSD4	100	78.515	MGP_SPRETEiJ_G0033078	Rpusd4	100	78.515	Mus_spretus
ENSCPOG00000014971	RPUSD4	98	78.706	ENSMPUG00000006608	RPUSD4	99	78.706	Mustela_putorius_furo
ENSCPOG00000014971	RPUSD4	90	82.749	ENSMLUG00000017328	-	97	79.837	Myotis_lucifugus
ENSCPOG00000014971	RPUSD4	68	83.465	ENSMLUG00000029348	-	100	83.465	Myotis_lucifugus
ENSCPOG00000014971	RPUSD4	98	81.351	ENSNGAG00000020847	Rpusd4	98	81.351	Nannospalax_galili
ENSCPOG00000014971	RPUSD4	86	51.988	ENSNBRG00000005207	rpusd4	95	51.988	Neolamprologus_brichardi
ENSCPOG00000014971	RPUSD4	100	78.780	ENSNLEG00000007465	RPUSD4	100	78.780	Nomascus_leucogenys
ENSCPOG00000014971	RPUSD4	92	70.605	ENSMEUG00000004370	RPUSD4	94	70.605	Notamacropus_eugenii
ENSCPOG00000014971	RPUSD4	70	59.848	ENSOPRG00000013141	-	100	59.848	Ochotona_princeps
ENSCPOG00000014971	RPUSD4	100	88.594	ENSODEG00000004577	RPUSD4	100	88.594	Octodon_degus
ENSCPOG00000014971	RPUSD4	93	49.716	ENSONIG00000018879	rpusd4	89	51.672	Oreochromis_niloticus
ENSCPOG00000014971	RPUSD4	78	67.797	ENSOANG00000007247	RPUSD4	95	67.677	Ornithorhynchus_anatinus
ENSCPOG00000014971	RPUSD4	99	81.769	ENSOCUG00000017039	RPUSD4	99	81.769	Oryctolagus_cuniculus
ENSCPOG00000014971	RPUSD4	88	50.435	ENSORLG00000002750	rpusd4	92	50.742	Oryzias_latipes
ENSCPOG00000014971	RPUSD4	87	50.440	ENSORLG00020002044	rpusd4	85	50.440	Oryzias_latipes_hni
ENSCPOG00000014971	RPUSD4	85	52.160	ENSORLG00015020034	rpusd4	81	52.160	Oryzias_latipes_hsok
ENSCPOG00000014971	RPUSD4	89	53.079	ENSOMEG00000004861	rpusd4	84	53.079	Oryzias_melastigma
ENSCPOG00000014971	RPUSD4	100	79.365	ENSOGAG00000008922	RPUSD4	100	79.365	Otolemur_garnettii
ENSCPOG00000014971	RPUSD4	96	79.339	ENSOARG00000012238	RPUSD4	96	79.396	Ovis_aries
ENSCPOG00000014971	RPUSD4	100	79.576	ENSPPAG00000042883	RPUSD4	93	79.576	Pan_paniscus
ENSCPOG00000014971	RPUSD4	100	78.780	ENSPPRG00000003081	RPUSD4	100	78.780	Panthera_pardus
ENSCPOG00000014971	RPUSD4	100	78.780	ENSPTIG00000012059	RPUSD4	100	78.780	Panthera_tigris_altaica
ENSCPOG00000014971	RPUSD4	100	79.310	ENSPTRG00000004454	RPUSD4	100	79.310	Pan_troglodytes
ENSCPOG00000014971	RPUSD4	100	80.371	ENSPANG00000015040	RPUSD4	100	80.371	Papio_anubis
ENSCPOG00000014971	RPUSD4	89	58.036	ENSPKIG00000023986	rpusd4	86	58.036	Paramormyrops_kingsleyae
ENSCPOG00000014971	RPUSD4	79	66.667	ENSPSIG00000014268	RPUSD4	95	66.667	Pelodiscus_sinensis
ENSCPOG00000014971	RPUSD4	86	50.765	ENSPMGG00000002806	rpusd4	91	50.613	Periophthalmus_magnuspinnatus
ENSCPOG00000014971	RPUSD4	100	71.353	ENSPEMG00000000278	Rpusd4	100	71.353	Peromyscus_maniculatus_bairdii
ENSCPOG00000014971	RPUSD4	82	44.838	ENSPMAG00000008183	rpusd4	98	44.838	Petromyzon_marinus
ENSCPOG00000014971	RPUSD4	90	72.941	ENSPCIG00000010212	RPUSD4	93	72.941	Phascolarctos_cinereus
ENSCPOG00000014971	RPUSD4	93	48.907	ENSPFOG00000019030	rpusd4	95	48.907	Poecilia_formosa
ENSCPOG00000014971	RPUSD4	93	49.451	ENSPLAG00000016848	rpusd4	92	49.451	Poecilia_latipinna
ENSCPOG00000014971	RPUSD4	93	48.219	ENSPMEG00000017534	rpusd4	92	48.219	Poecilia_mexicana
ENSCPOG00000014971	RPUSD4	91	48.451	ENSPREG00000005689	rpusd4	91	48.451	Poecilia_reticulata
ENSCPOG00000014971	RPUSD4	100	79.576	ENSPPYG00000004043	RPUSD4	100	79.576	Pongo_abelii
ENSCPOG00000014971	RPUSD4	80	77.174	ENSPCAG00000000753	RPUSD4	81	77.174	Procavia_capensis
ENSCPOG00000014971	RPUSD4	98	76.280	ENSPCOG00000020694	RPUSD4	100	76.280	Propithecus_coquereli
ENSCPOG00000014971	RPUSD4	98	79.730	ENSPVAG00000000988	RPUSD4	99	79.730	Pteropus_vampyrus
ENSCPOG00000014971	RPUSD4	93	49.148	ENSPNYG00000009652	rpusd4	90	49.148	Pundamilia_nyererei
ENSCPOG00000014971	RPUSD4	96	50.964	ENSPNAG00000012264	rpusd4	95	50.964	Pygocentrus_nattereri
ENSCPOG00000014971	RPUSD4	100	78.249	ENSRNOG00000011567	Rpusd4	100	78.249	Rattus_norvegicus
ENSCPOG00000014971	RPUSD4	96	81.440	ENSRBIG00000034842	RPUSD4	100	79.841	Rhinopithecus_bieti
ENSCPOG00000014971	RPUSD4	96	81.440	ENSRROG00000039753	RPUSD4	100	79.841	Rhinopithecus_roxellana
ENSCPOG00000014971	RPUSD4	99	78.763	ENSSBOG00000030413	RPUSD4	100	78.763	Saimiri_boliviensis_boliviensis
ENSCPOG00000014971	RPUSD4	80	74.751	ENSSHAG00000008304	RPUSD4	99	74.751	Sarcophilus_harrisii
ENSCPOG00000014971	RPUSD4	80	61.386	ENSSFOG00015006203	rpusd4	90	58.133	Scleropages_formosus
ENSCPOG00000014971	RPUSD4	89	51.613	ENSSMAG00000020978	rpusd4	89	51.613	Scophthalmus_maximus
ENSCPOG00000014971	RPUSD4	85	51.543	ENSSDUG00000013399	rpusd4	85	51.543	Seriola_dumerili
ENSCPOG00000014971	RPUSD4	85	51.543	ENSSLDG00000023507	rpusd4	85	51.543	Seriola_lalandi_dorsalis
ENSCPOG00000014971	RPUSD4	89	62.941	ENSSPUG00000001401	RPUSD4	94	63.529	Sphenodon_punctatus
ENSCPOG00000014971	RPUSD4	96	50.272	ENSSPAG00000012163	rpusd4	93	50.272	Stegastes_partitus
ENSCPOG00000014971	RPUSD4	98	81.622	ENSSSCG00000015233	RPUSD4	98	81.622	Sus_scrofa
ENSCPOG00000014971	RPUSD4	79	60.667	ENSTGUG00000000773	RPUSD4	100	60.667	Taeniopygia_guttata
ENSCPOG00000014971	RPUSD4	86	51.524	ENSTRUG00000012283	rpusd4	84	51.524	Takifugu_rubripes
ENSCPOG00000014971	RPUSD4	89	50.716	ENSTNIG00000014676	rpusd4	89	50.716	Tetraodon_nigroviridis
ENSCPOG00000014971	RPUSD4	100	79.787	ENSTTRG00000001555	RPUSD4	100	79.787	Tursiops_truncatus
ENSCPOG00000014971	RPUSD4	100	80.106	ENSUMAG00000002219	RPUSD4	100	80.106	Ursus_maritimus
ENSCPOG00000014971	RPUSD4	70	82.955	ENSVPAG00000001066	RPUSD4	100	82.955	Vicugna_pacos
ENSCPOG00000014971	RPUSD4	100	78.836	ENSVVUG00000020101	RPUSD4	100	78.836	Vulpes_vulpes
ENSCPOG00000014971	RPUSD4	94	49.180	ENSXCOG00000004676	rpusd4	93	49.180	Xiphophorus_couchianus
ENSCPOG00000014971	RPUSD4	94	48.634	ENSXMAG00000023351	rpusd4	93	48.634	Xiphophorus_maculatus