EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCPOG00000015696 (Gene tree)
Gene ID: 100722374
Gene Symbol: SMG5
Alias: EST1B|KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Minus strand
Length: 33675 bases
Position: chrDS562865.1:16840732-16874406
Accession: 100722374
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000014154	EST1	PF10374.9	7.1e-24	1	1
ENSCPOP00000014154	EST1_DNA_bind	PF10373.9	2.1e-39	1	2
ENSCPOP00000014154	EST1_DNA_bind	PF10373.9	2.1e-39	2	2
ENSCPOP00000014154	PIN_4	PF13638.6	1.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000015851	SMG5-201	4838	XM_003475630	ENSCPOP00000014154	1018 (aa)	XP_003475678	H0VTY7

Gene Model

Click here to download ENSCPOG00000015696's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000015696's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000015696	SMG5	100	95.678	ENSG00000198952	SMG5	100	95.972	Homo_sapiens
ENSCPOG00000015696	SMG5	99	67.485	ENSAPOG00000019690	smg5	99	66.699	Acanthochromis_polyacanthus
ENSCPOG00000015696	SMG5	98	91.357	ENSAMEG00000014458	SMG5	100	90.854	Ailuropoda_melanoleuca
ENSCPOG00000015696	SMG5	99	65.105	ENSACIG00000001353	smg5	99	65.962	Amphilophus_citrinellus
ENSCPOG00000015696	SMG5	98	65.316	ENSAOCG00000019483	smg5	93	66.701	Amphiprion_ocellaris
ENSCPOG00000015696	SMG5	98	66.567	ENSAPEG00000022949	smg5	98	66.368	Amphiprion_percula
ENSCPOG00000015696	SMG5	99	65.484	ENSATEG00000005348	smg5	99	66.505	Anabas_testudineus
ENSCPOG00000015696	SMG5	98	78.696	ENSAPLG00000010263	SMG5	100	77.702	Anas_platyrhynchos
ENSCPOG00000015696	SMG5	100	95.285	ENSANAG00000032899	SMG5	100	95.580	Aotus_nancymaae
ENSCPOG00000015696	SMG5	99	64.847	ENSACLG00000009311	smg5	99	65.514	Astatotilapia_calliptera
ENSCPOG00000015696	SMG5	99	44.086	ENSBTAG00000021747	-	99	43.164	Bos_taurus
ENSCPOG00000015696	SMG5	100	94.008	ENSBTAG00000009435	SMG5	100	94.303	Bos_taurus
ENSCPOG00000015696	SMG5	100	95.285	ENSCJAG00000005684	SMG5	100	95.580	Callithrix_jacchus
ENSCPOG00000015696	SMG5	100	92.731	ENSCAFG00000016839	SMG5	100	92.436	Canis_familiaris
ENSCPOG00000015696	SMG5	100	92.731	ENSCAFG00020006061	SMG5	100	92.436	Canis_lupus_dingo
ENSCPOG00000015696	SMG5	99	44.379	ENSCHIG00000006323	-	99	43.793	Capra_hircus
ENSCPOG00000015696	SMG5	100	94.106	ENSCHIG00000007709	SMG5	100	94.401	Capra_hircus
ENSCPOG00000015696	SMG5	100	93.719	ENSTSYG00000004099	SMG5	100	94.014	Carlito_syrichta
ENSCPOG00000015696	SMG5	97	77.586	ENSCAPG00000003631	SMG5	100	78.609	Cavia_aperea
ENSCPOG00000015696	SMG5	100	95.481	ENSCCAG00000027409	SMG5	100	95.776	Cebus_capucinus
ENSCPOG00000015696	SMG5	100	96.267	ENSCATG00000030539	SMG5	100	96.267	Cercocebus_atys
ENSCPOG00000015696	SMG5	100	97.642	ENSCLAG00000003983	SMG5	100	97.642	Chinchilla_lanigera
ENSCPOG00000015696	SMG5	100	95.874	ENSCSAG00000002120	SMG5	100	96.169	Chlorocebus_sabaeus
ENSCPOG00000015696	SMG5	54	91.971	ENSCHOG00000008741	-	57	91.971	Choloepus_hoffmanni
ENSCPOG00000015696	SMG5	94	77.586	ENSCPBG00000025848	SMG5	100	77.935	Chrysemys_picta_bellii
ENSCPOG00000015696	SMG5	94	35.193	ENSCING00000008706	-	99	34.553	Ciona_intestinalis
ENSCPOG00000015696	SMG5	100	91.945	ENSCANG00000029208	SMG5	100	91.552	Colobus_angolensis_palliatus
ENSCPOG00000015696	SMG5	100	92.043	ENSCGRG00001006336	Smg5	100	92.043	Cricetulus_griseus_chok1gshd
ENSCPOG00000015696	SMG5	98	92.153	ENSCGRG00000005111	Smg5	100	92.145	Cricetulus_griseus_crigri
ENSCPOG00000015696	SMG5	99	65.625	ENSCSEG00000014220	smg5	92	77.305	Cynoglossus_semilaevis
ENSCPOG00000015696	SMG5	99	61.209	ENSCVAG00000000529	smg5	99	61.419	Cyprinodon_variegatus
ENSCPOG00000015696	SMG5	100	90.079	ENSDNOG00000000051	SMG5	100	90.373	Dasypus_novemcinctus
ENSCPOG00000015696	SMG5	92	36.134	ENSDNOG00000039862	-	100	35.399	Dasypus_novemcinctus
ENSCPOG00000015696	SMG5	100	94.406	ENSDORG00000010382	Smg5	100	93.621	Dipodomys_ordii
ENSCPOG00000015696	SMG5	66	34.868	FBgn0019890	Smg5	62	34.194	Drosophila_melanogaster
ENSCPOG00000015696	SMG5	82	98.058	ENSETEG00000010336	SMG5	83	98.058	Echinops_telfairi
ENSCPOG00000015696	SMG5	90	46.448	ENSEBUG00000003739	smg5	98	46.772	Eptatretus_burgeri
ENSCPOG00000015696	SMG5	100	94.892	ENSEASG00005019122	SMG5	100	95.187	Equus_asinus_asinus
ENSCPOG00000015696	SMG5	100	94.892	ENSECAG00000001389	SMG5	100	95.187	Equus_caballus
ENSCPOG00000015696	SMG5	72	96.830	ENSEEUG00000012690	SMG5	73	96.830	Erinaceus_europaeus
ENSCPOG00000015696	SMG5	99	65.604	ENSELUG00000012585	smg5	99	65.024	Esox_lucius
ENSCPOG00000015696	SMG5	100	92.633	ENSFCAG00000011783	SMG5	100	92.444	Felis_catus
ENSCPOG00000015696	SMG5	58	80.366	ENSFALG00000001166	-	99	79.299	Ficedula_albicollis
ENSCPOG00000015696	SMG5	98	94.260	ENSFDAG00000017388	SMG5	100	94.260	Fukomys_damarensis
ENSCPOG00000015696	SMG5	97	62.399	ENSFHEG00000013939	smg5	95	68.690	Fundulus_heteroclitus
ENSCPOG00000015696	SMG5	99	61.511	ENSGMOG00000007310	smg5	92	75.342	Gadus_morhua
ENSCPOG00000015696	SMG5	99	77.596	ENSGALG00000029918	-	100	76.740	Gallus_gallus
ENSCPOG00000015696	SMG5	73	75.682	ENSGAFG00000021691	smg5	71	77.176	Gambusia_affinis
ENSCPOG00000015696	SMG5	100	79.431	ENSGAGG00000016131	SMG5	100	78.897	Gopherus_agassizii
ENSCPOG00000015696	SMG5	100	95.481	ENSGGOG00000010932	SMG5	100	95.776	Gorilla_gorilla
ENSCPOG00000015696	SMG5	99	64.756	ENSHBUG00000008654	smg5	99	64.577	Haplochromis_burtoni
ENSCPOG00000015696	SMG5	100	93.811	ENSHGLG00000019152	SMG5	100	93.811	Heterocephalus_glaber_female
ENSCPOG00000015696	SMG5	90	94.189	ENSHGLG00100015948	SMG5	99	94.189	Heterocephalus_glaber_male
ENSCPOG00000015696	SMG5	86	72.861	ENSHCOG00000010229	smg5	92	72.861	Hippocampus_comes
ENSCPOG00000015696	SMG5	99	62.238	ENSIPUG00000006624	Smg5	99	62.613	Ictalurus_punctatus
ENSCPOG00000015696	SMG5	100	96.075	ENSSTOG00000001780	SMG5	100	96.075	Ictidomys_tridecemlineatus
ENSCPOG00000015696	SMG5	100	92.941	ENSJJAG00000022763	Smg5	100	92.843	Jaculus_jaculus
ENSCPOG00000015696	SMG5	50	60.073	ENSKMAG00000014586	smg5	99	61.511	Kryptolebias_marmoratus
ENSCPOG00000015696	SMG5	99	66.699	ENSLBEG00000002145	smg5	99	66.120	Labrus_bergylta
ENSCPOG00000015696	SMG5	100	64.510	ENSLACG00000010521	SMG5	100	64.482	Latimeria_chalumnae
ENSCPOG00000015696	SMG5	100	92.731	ENSLAFG00000006241	SMG5	100	93.026	Loxodonta_africana
ENSCPOG00000015696	SMG5	100	95.874	ENSMFAG00000045357	SMG5	100	96.169	Macaca_fascicularis
ENSCPOG00000015696	SMG5	100	96.267	ENSMMUG00000000090	SMG5	100	96.267	Macaca_mulatta
ENSCPOG00000015696	SMG5	100	95.776	ENSMNEG00000044425	SMG5	100	96.071	Macaca_nemestrina
ENSCPOG00000015696	SMG5	100	89.824	ENSMLEG00000041192	SMG5	100	89.432	Mandrillus_leucophaeus
ENSCPOG00000015696	SMG5	99	62.177	ENSMAMG00000010683	smg5	100	61.815	Mastacembelus_armatus
ENSCPOG00000015696	SMG5	99	63.905	ENSMZEG00005015815	smg5	99	64.088	Maylandia_zebra
ENSCPOG00000015696	SMG5	63	59.699	ENSMZEG00005016543	smg5	100	59.668	Maylandia_zebra
ENSCPOG00000015696	SMG5	100	91.061	ENSMAUG00000010381	Smg5	100	91.061	Mesocricetus_auratus
ENSCPOG00000015696	SMG5	100	94.892	ENSMICG00000002257	SMG5	100	95.187	Microcebus_murinus
ENSCPOG00000015696	SMG5	100	90.686	ENSMOCG00000016590	Smg5	100	90.196	Microtus_ochrogaster
ENSCPOG00000015696	SMG5	99	60.215	ENSMMOG00000017199	smg5	99	60.538	Mola_mola
ENSCPOG00000015696	SMG5	81	37.805	ENSMODG00000004532	-	83	37.940	Monodelphis_domestica
ENSCPOG00000015696	SMG5	75	40.420	ENSMODG00000004735	-	86	40.533	Monodelphis_domestica
ENSCPOG00000015696	SMG5	97	35.039	ENSMODG00000004511	-	99	34.154	Monodelphis_domestica
ENSCPOG00000015696	SMG5	87	88.976	ENSMODG00000016901	SMG5	98	88.076	Monodelphis_domestica
ENSCPOG00000015696	SMG5	78	38.035	ENSMODG00000010675	-	84	38.196	Monodelphis_domestica
ENSCPOG00000015696	SMG5	99	60.963	ENSMALG00000010375	smg5	99	59.929	Monopterus_albus
ENSCPOG00000015696	SMG5	100	91.945	MGP_CAROLIEiJ_G0025163	Smg5	100	97.765	Mus_caroli
ENSCPOG00000015696	SMG5	100	92.043	ENSMUSG00000001415	Smg5	99	97.765	Mus_musculus
ENSCPOG00000015696	SMG5	100	91.658	MGP_PahariEiJ_G0026606	Smg5	100	97.765	Mus_pahari
ENSCPOG00000015696	SMG5	100	91.847	MGP_SPRETEiJ_G0026104	Smg5	100	97.765	Mus_spretus
ENSCPOG00000015696	SMG5	94	91.702	ENSMPUG00000004546	SMG5	100	91.387	Mustela_putorius_furo
ENSCPOG00000015696	SMG5	100	93.738	ENSMLUG00000008518	SMG5	100	92.955	Myotis_lucifugus
ENSCPOG00000015696	SMG5	100	92.927	ENSNGAG00000020706	Smg5	100	92.829	Nannospalax_galili
ENSCPOG00000015696	SMG5	98	44.088	ENSNGAG00000012101	-	98	44.214	Nannospalax_galili
ENSCPOG00000015696	SMG5	97	63.037	ENSNBRG00000004332	smg5	98	63.755	Neolamprologus_brichardi
ENSCPOG00000015696	SMG5	100	95.187	ENSNLEG00000012439	SMG5	100	95.481	Nomascus_leucogenys
ENSCPOG00000015696	SMG5	100	87.426	ENSMEUG00000012834	SMG5	100	85.363	Notamacropus_eugenii
ENSCPOG00000015696	SMG5	100	92.731	ENSOPRG00000009152	SMG5	100	93.026	Ochotona_princeps
ENSCPOG00000015696	SMG5	100	95.678	ENSODEG00000012237	SMG5	100	95.678	Octodon_degus
ENSCPOG00000015696	SMG5	98	94.064	ENSOCUG00000012886	SMG5	100	94.366	Oryctolagus_cuniculus
ENSCPOG00000015696	SMG5	91	40.797	ENSOCUG00000023338	-	99	40.258	Oryctolagus_cuniculus
ENSCPOG00000015696	SMG5	99	65.039	ENSORLG00020013127	smg5	99	65.661	Oryzias_latipes_hni
ENSCPOG00000015696	SMG5	99	64.752	ENSORLG00015019014	smg5	99	65.858	Oryzias_latipes_hsok
ENSCPOG00000015696	SMG5	100	93.517	ENSOGAG00000004966	SMG5	100	93.811	Otolemur_garnettii
ENSCPOG00000015696	SMG5	99	44.390	ENSOARG00000011963	-	99	43.246	Ovis_aries
ENSCPOG00000015696	SMG5	100	94.204	ENSOARG00000005778	SMG5	100	94.499	Ovis_aries
ENSCPOG00000015696	SMG5	100	95.383	ENSPPAG00000011996	SMG5	100	95.678	Pan_paniscus
ENSCPOG00000015696	SMG5	98	92.555	ENSPPRG00000011901	SMG5	100	92.254	Panthera_pardus
ENSCPOG00000015696	SMG5	96	85.758	ENSPTIG00000007892	SMG5	96	86.321	Panthera_tigris_altaica
ENSCPOG00000015696	SMG5	100	95.580	ENSPTRG00000023925	SMG5	100	95.874	Pan_troglodytes
ENSCPOG00000015696	SMG5	100	95.580	ENSPTRG00000049282	-	100	95.874	Pan_troglodytes
ENSCPOG00000015696	SMG5	100	96.267	ENSPANG00000011201	SMG5	100	96.267	Papio_anubis
ENSCPOG00000015696	SMG5	99	66.049	ENSPKIG00000009402	smg5	99	66.082	Paramormyrops_kingsleyae
ENSCPOG00000015696	SMG5	98	80.020	ENSPSIG00000015198	SMG5	100	79.563	Pelodiscus_sinensis
ENSCPOG00000015696	SMG5	99	60.938	ENSPMGG00000010465	smg5	99	60.534	Periophthalmus_magnuspinnatus
ENSCPOG00000015696	SMG5	56	45.375	ENSPEMG00000010022	-	95	44.852	Peromyscus_maniculatus_bairdii
ENSCPOG00000015696	SMG5	100	92.043	ENSPEMG00000001819	Smg5	100	92.043	Peromyscus_maniculatus_bairdii
ENSCPOG00000015696	SMG5	99	49.422	ENSPMAG00000000410	smg5	99	49.856	Petromyzon_marinus
ENSCPOG00000015696	SMG5	100	88.714	ENSPCIG00000018938	SMG5	100	87.929	Phascolarctos_cinereus
ENSCPOG00000015696	SMG5	50	61.524	ENSPFOG00000010191	smg5	99	62.097	Poecilia_formosa
ENSCPOG00000015696	SMG5	50	60.967	ENSPLAG00000009332	smg5	99	61.918	Poecilia_latipinna
ENSCPOG00000015696	SMG5	99	66.027	ENSPMEG00000014105	smg5	99	65.043	Poecilia_mexicana
ENSCPOG00000015696	SMG5	93	75.909	ENSPREG00000017713	smg5	99	62.366	Poecilia_reticulata
ENSCPOG00000015696	SMG5	100	95.678	ENSPPYG00000000723	SMG5	100	95.972	Pongo_abelii
ENSCPOG00000015696	SMG5	75	97.238	ENSPCAG00000008412	SMG5	81	97.238	Procavia_capensis
ENSCPOG00000015696	SMG5	100	94.990	ENSPCOG00000004741	SMG5	100	95.285	Propithecus_coquereli
ENSCPOG00000015696	SMG5	100	84.479	ENSPVAG00000016748	SMG5	100	85.560	Pteropus_vampyrus
ENSCPOG00000015696	SMG5	93	63.492	ENSPNYG00000013397	smg5	99	61.062	Pundamilia_nyererei
ENSCPOG00000015696	SMG5	100	92.043	ENSRNOG00000019590	Smg5	100	92.043	Rattus_norvegicus
ENSCPOG00000015696	SMG5	100	95.874	ENSRBIG00000027428	SMG5	100	96.169	Rhinopithecus_bieti
ENSCPOG00000015696	SMG5	100	95.776	ENSRROG00000030035	SMG5	100	96.071	Rhinopithecus_roxellana
ENSCPOG00000015696	SMG5	100	95.285	ENSSBOG00000033339	SMG5	100	95.580	Saimiri_boliviensis_boliviensis
ENSCPOG00000015696	SMG5	86	40.420	ENSSHAG00000000561	-	85	40.420	Sarcophilus_harrisii
ENSCPOG00000015696	SMG5	64	39.766	ENSSHAG00000000935	-	82	40.854	Sarcophilus_harrisii
ENSCPOG00000015696	SMG5	98	88.100	ENSSHAG00000014163	SMG5	100	87.300	Sarcophilus_harrisii
ENSCPOG00000015696	SMG5	99	34.387	ENSSHAG00000009572	-	78	43.655	Sarcophilus_harrisii
ENSCPOG00000015696	SMG5	99	65.700	ENSSFOG00015024175	smg5	99	66.248	Scleropages_formosus
ENSCPOG00000015696	SMG5	99	60.973	ENSSMAG00000013059	smg5	99	62.389	Scophthalmus_maximus
ENSCPOG00000015696	SMG5	50	61.749	ENSSDUG00000007122	smg5	55	57.605	Seriola_dumerili
ENSCPOG00000015696	SMG5	99	60.407	ENSSLDG00000011418	smg5	96	61.919	Seriola_lalandi_dorsalis
ENSCPOG00000015696	SMG5	90	80.087	ENSSARG00000012484	SMG5	100	79.652	Sorex_araneus
ENSCPOG00000015696	SMG5	94	77.475	ENSSPUG00000002260	SMG5	100	76.441	Sphenodon_punctatus
ENSCPOG00000015696	SMG5	91	76.347	ENSSPAG00000014266	smg5	98	65.058	Stegastes_partitus
ENSCPOG00000015696	SMG5	99	73.943	ENSSSCG00000039308	-	100	73.943	Sus_scrofa
ENSCPOG00000015696	SMG5	100	95.285	ENSSSCG00000006490	-	100	95.580	Sus_scrofa
ENSCPOG00000015696	SMG5	53	36.036	ENSSSCG00000037182	-	65	42.278	Sus_scrofa
ENSCPOG00000015696	SMG5	99	80.059	ENSTGUG00000003748	-	100	79.825	Taeniopygia_guttata
ENSCPOG00000015696	SMG5	99	65.222	ENSTRUG00000012580	smg5	99	64.547	Takifugu_rubripes
ENSCPOG00000015696	SMG5	99	65.601	ENSTNIG00000010303	smg5	99	65.276	Tetraodon_nigroviridis
ENSCPOG00000015696	SMG5	60	98.030	ENSTBEG00000002777	SMG5	60	98.030	Tupaia_belangeri
ENSCPOG00000015696	SMG5	100	89.980	ENSTTRG00000001401	SMG5	100	89.587	Tursiops_truncatus
ENSCPOG00000015696	SMG5	100	92.141	ENSUAMG00000013721	SMG5	100	91.847	Ursus_americanus
ENSCPOG00000015696	SMG5	98	87.763	ENSUMAG00000018041	SMG5	97	87.462	Ursus_maritimus
ENSCPOG00000015696	SMG5	98	84.794	ENSVPAG00000009446	SMG5	99	84.391	Vicugna_pacos
ENSCPOG00000015696	SMG5	100	92.534	ENSVVUG00000005887	SMG5	100	92.436	Vulpes_vulpes
ENSCPOG00000015696	SMG5	77	65.000	ENSXETG00000033791	SMG5	99	65.278	Xenopus_tropicalis
ENSCPOG00000015696	SMG5	60	75.862	ENSXCOG00000004379	smg5	95	69.780	Xiphophorus_couchianus
ENSCPOG00000015696	SMG5	99	66.182	ENSXMAG00000013499	smg5	99	65.451	Xiphophorus_maculatus