EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPOG00000019646 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: lin-28 homolog A
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Minus strand
Length: 12014 bases
Position: chrDS562880.1:9734878-9746891
Accession: 100715141
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000015653	zf-CCHC	PF00098.23	1.7e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000023226	-	444	XM_013153790	ENSCPOP00000015653	147 (aa)	XP_013009244	H0VY72

Gene Model

Click here to download ENSCPOG00000019646's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000019646's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPOG00000019646	-	100	56.459	ENSCPOG00000024027	-	100	56.459

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000019646	-	100	52.153	ENSG00000131914	LIN28A	100	52.153	Homo_sapiens
ENSCPOG00000019646	-	100	60.428	ENSAMEG00000019027	-	100	56.150	Ailuropoda_melanoleuca
ENSCPOG00000019646	-	100	50.952	ENSAMEG00000010582	-	100	47.619	Ailuropoda_melanoleuca
ENSCPOG00000019646	-	72	85.366	ENSAOCG00000014049	lin28a	52	70.000	Amphiprion_ocellaris
ENSCPOG00000019646	-	90	60.938	ENSATEG00000008862	lin28a	54	75.000	Anabas_testudineus
ENSCPOG00000019646	-	64	85.366	ENSATEG00000014088	lin28b	50	73.171	Anabas_testudineus
ENSCPOG00000019646	-	85	75.000	ENSACAG00000003957	LIN28B	51	75.000	Anolis_carolinensis
ENSCPOG00000019646	-	99	56.545	ENSANAG00000038124	-	93	54.450	Aotus_nancymaae
ENSCPOG00000019646	-	100	53.110	ENSANAG00000021009	-	100	53.110	Aotus_nancymaae
ENSCPOG00000019646	-	85	78.431	ENSAMXG00000038508	lin28a	61	78.431	Astyanax_mexicanus
ENSCPOG00000019646	-	85	88.000	ENSBTAG00000048376	-	60	88.000	Bos_taurus
ENSCPOG00000019646	-	100	51.196	ENSBTAG00000040497	LIN28A	100	47.847	Bos_taurus
ENSCPOG00000019646	-	100	52.632	ENSCJAG00000009796	LIN28A	100	52.632	Callithrix_jacchus
ENSCPOG00000019646	-	98	53.769	ENSCJAG00000046922	-	93	53.769	Callithrix_jacchus
ENSCPOG00000019646	-	100	93.421	ENSCJAG00000022770	-	71	93.421	Callithrix_jacchus
ENSCPOG00000019646	-	100	51.905	ENSCAFG00000012488	LIN28A	100	48.571	Canis_familiaris
ENSCPOG00000019646	-	100	51.905	ENSCAFG00020021405	LIN28A	100	48.571	Canis_lupus_dingo
ENSCPOG00000019646	-	100	52.153	ENSCHIG00000020597	-	100	52.153	Capra_hircus
ENSCPOG00000019646	-	95	51.366	ENSCHIG00000026545	-	92	48.087	Capra_hircus
ENSCPOG00000019646	-	100	52.632	ENSTSYG00000027067	LIN28A	100	52.632	Carlito_syrichta
ENSCPOG00000019646	-	100	53.110	ENSCCAG00000012963	-	100	53.110	Cebus_capucinus
ENSCPOG00000019646	-	100	60.302	ENSCCAG00000010683	-	100	60.804	Cebus_capucinus
ENSCPOG00000019646	-	100	62.944	ENSCCAG00000037041	-	100	62.944	Cebus_capucinus
ENSCPOG00000019646	-	100	52.632	ENSCATG00000020825	LIN28A	100	52.632	Cercocebus_atys
ENSCPOG00000019646	-	100	55.502	ENSCLAG00000013508	LIN28A	100	55.502	Chinchilla_lanigera
ENSCPOG00000019646	-	100	52.381	ENSCSAG00000000975	LIN28A	100	52.381	Chlorocebus_sabaeus
ENSCPOG00000019646	-	100	92.958	ENSCHOG00000002073	-	70	92.958	Choloepus_hoffmanni
ENSCPOG00000019646	-	100	43.781	ENSCANG00000039698	-	100	43.781	Colobus_angolensis_palliatus
ENSCPOG00000019646	-	100	51.196	ENSCANG00000029848	LIN28A	100	51.196	Colobus_angolensis_palliatus
ENSCPOG00000019646	-	100	53.110	ENSCGRG00001017186	Lin28a	100	53.110	Cricetulus_griseus_chok1gshd
ENSCPOG00000019646	-	94	57.692	ENSCSEG00000000312	lin28b	51	72.500	Cynoglossus_semilaevis
ENSCPOG00000019646	-	69	70.588	ENSDARG00000052511	lin28b	64	70.732	Danio_rerio
ENSCPOG00000019646	-	94	64.384	ENSDARG00000016999	lin28a	50	79.487	Danio_rerio
ENSCPOG00000019646	-	99	51.759	ENSDNOG00000031694	-	99	50.251	Dasypus_novemcinctus
ENSCPOG00000019646	-	100	54.067	ENSDORG00000027432	Lin28a	100	54.067	Dipodomys_ordii
ENSCPOG00000019646	-	100	45.556	ENSDORG00000005491	-	100	50.249	Dipodomys_ordii
ENSCPOG00000019646	-	100	51.196	ENSEASG00005003947	LIN28A	100	46.890	Equus_asinus_asinus
ENSCPOG00000019646	-	100	51.196	ENSECAG00000020267	LIN28A	100	46.890	Equus_caballus
ENSCPOG00000019646	-	100	51.905	ENSFCAG00000012810	LIN28A	100	48.571	Felis_catus
ENSCPOG00000019646	-	100	53.589	ENSFDAG00000015707	LIN28A	100	53.589	Fukomys_damarensis
ENSCPOG00000019646	-	64	85.366	ENSFHEG00000022590	lin28b	52	70.000	Fundulus_heteroclitus
ENSCPOG00000019646	-	52	82.500	ENSGMOG00000015523	lin28a	56	82.500	Gadus_morhua
ENSCPOG00000019646	-	78	79.592	ENSGMOG00000010704	lin28b	72	37.647	Gadus_morhua
ENSCPOG00000019646	-	73	68.421	ENSGACG00000007826	lin28a	61	68.421	Gasterosteus_aculeatus
ENSCPOG00000019646	-	100	52.153	ENSGGOG00000040223	LIN28A	100	52.153	Gorilla_gorilla
ENSCPOG00000019646	-	100	63.959	ENSHGLG00000013109	-	100	63.959	Heterocephalus_glaber_female
ENSCPOG00000019646	-	90	66.486	ENSHGLG00000001037	-	100	65.405	Heterocephalus_glaber_female
ENSCPOG00000019646	-	100	60.891	ENSHGLG00000019546	-	100	60.891	Heterocephalus_glaber_female
ENSCPOG00000019646	-	100	54.545	ENSHGLG00000014608	-	100	54.545	Heterocephalus_glaber_female
ENSCPOG00000019646	-	99	65.079	ENSHGLG00100005396	-	98	65.079	Heterocephalus_glaber_male
ENSCPOG00000019646	-	100	60.891	ENSHGLG00100006225	-	100	60.891	Heterocephalus_glaber_male
ENSCPOG00000019646	-	100	54.067	ENSHGLG00100017589	-	100	54.067	Heterocephalus_glaber_male
ENSCPOG00000019646	-	94	68.254	ENSIPUG00000014952	si:ch1073-284b18.2	65	68.254	Ictalurus_punctatus
ENSCPOG00000019646	-	62	70.732	ENSIPUG00000013520	lin28b	56	70.732	Ictalurus_punctatus
ENSCPOG00000019646	-	87	70.312	ENSIPUG00000011583	lin28a	61	74.576	Ictalurus_punctatus
ENSCPOG00000019646	-	100	53.810	ENSSTOG00000004329	-	100	53.810	Ictidomys_tridecemlineatus
ENSCPOG00000019646	-	95	81.579	ENSSTOG00000022629	-	65	81.579	Ictidomys_tridecemlineatus
ENSCPOG00000019646	-	100	57.360	ENSJJAG00000000679	-	100	57.360	Jaculus_jaculus
ENSCPOG00000019646	-	92	58.947	ENSJJAG00000018806	Lin28a	100	58.947	Jaculus_jaculus
ENSCPOG00000019646	-	95	58.824	ENSKMAG00000016334	lin28b	58	71.698	Kryptolebias_marmoratus
ENSCPOG00000019646	-	92	55.882	ENSLBEG00000018630	-	66	58.824	Labrus_bergylta
ENSCPOG00000019646	-	92	55.882	ENSLBEG00000000893	lin28a	66	58.824	Labrus_bergylta
ENSCPOG00000019646	-	92	60.000	ENSLACG00000004053	LIN28B	82	57.143	Latimeria_chalumnae
ENSCPOG00000019646	-	99	72.857	ENSLACG00000002747	LIN28A	98	37.561	Latimeria_chalumnae
ENSCPOG00000019646	-	100	49.761	ENSLAFG00000017525	LIN28A	100	47.368	Loxodonta_africana
ENSCPOG00000019646	-	100	52.632	ENSMFAG00000037808	LIN28A	100	52.632	Macaca_fascicularis
ENSCPOG00000019646	-	100	52.632	ENSMMUG00000044953	LIN28A	100	52.632	Macaca_mulatta
ENSCPOG00000019646	-	100	52.153	ENSMNEG00000035868	LIN28A	100	52.153	Macaca_nemestrina
ENSCPOG00000019646	-	100	52.632	ENSMLEG00000011746	LIN28A	100	52.632	Mandrillus_leucophaeus
ENSCPOG00000019646	-	98	64.865	ENSMAMG00000002030	lin28a	69	64.865	Mastacembelus_armatus
ENSCPOG00000019646	-	100	54.067	ENSMAUG00000018852	Lin28a	100	54.067	Mesocricetus_auratus
ENSCPOG00000019646	-	78	65.812	ENSMAUG00000006523	Lin28b	51	76.087	Mesocricetus_auratus
ENSCPOG00000019646	-	89	50.777	ENSMICG00000035023	-	100	50.777	Microcebus_murinus
ENSCPOG00000019646	-	100	63.590	ENSMICG00000013694	-	100	61.538	Microcebus_murinus
ENSCPOG00000019646	-	100	61.735	ENSMICG00000034716	-	100	58.673	Microcebus_murinus
ENSCPOG00000019646	-	100	54.187	ENSMICG00000035289	-	100	54.187	Microcebus_murinus
ENSCPOG00000019646	-	100	54.545	ENSMOCG00000007819	Lin28a	100	54.545	Microtus_ochrogaster
ENSCPOG00000019646	-	71	67.500	ENSMMOG00000014314	lin28a	58	67.500	Mola_mola
ENSCPOG00000019646	-	100	51.196	ENSMODG00000014236	LIN28A	100	48.325	Monodelphis_domestica
ENSCPOG00000019646	-	80	61.111	ENSMALG00000000365	lin28b	52	70.732	Monopterus_albus
ENSCPOG00000019646	-	92	64.062	ENSMALG00000004941	lin28a	65	64.062	Monopterus_albus
ENSCPOG00000019646	-	100	54.067	MGP_CAROLIEiJ_G0026603	Lin28a	100	54.067	Mus_caroli
ENSCPOG00000019646	-	100	54.067	ENSMUSG00000050966	Lin28a	100	54.067	Mus_musculus
ENSCPOG00000019646	-	86	53.968	MGP_PahariEiJ_G0028936	Lin28a	99	53.968	Mus_pahari
ENSCPOG00000019646	-	100	54.067	MGP_SPRETEiJ_G0027583	Lin28a	100	54.067	Mus_spretus
ENSCPOG00000019646	-	100	51.429	ENSMPUG00000015724	LIN28A	100	48.095	Mustela_putorius_furo
ENSCPOG00000019646	-	100	50.239	ENSMLUG00000010158	-	100	46.890	Myotis_lucifugus
ENSCPOG00000019646	-	100	54.067	ENSNGAG00000018842	Lin28a	100	54.067	Nannospalax_galili
ENSCPOG00000019646	-	100	46.154	ENSNLEG00000027494	-	100	46.154	Nomascus_leucogenys
ENSCPOG00000019646	-	100	52.153	ENSNLEG00000028132	LIN28A	100	52.153	Nomascus_leucogenys
ENSCPOG00000019646	-	100	51.196	ENSMEUG00000008743	LIN28A	100	48.325	Notamacropus_eugenii
ENSCPOG00000019646	-	100	55.502	ENSOPRG00000001591	LIN28A	100	55.502	Ochotona_princeps
ENSCPOG00000019646	-	100	55.676	ENSODEG00000016070	-	100	55.676	Octodon_degus
ENSCPOG00000019646	-	99	53.623	ENSODEG00000004283	-	100	53.623	Octodon_degus
ENSCPOG00000019646	-	99	96.053	ENSODEG00000019263	-	70	96.053	Octodon_degus
ENSCPOG00000019646	-	80	50.877	ENSOCUG00000011640	-	100	51.462	Oryctolagus_cuniculus
ENSCPOG00000019646	-	99	88.571	ENSOCUG00000027786	-	69	88.571	Oryctolagus_cuniculus
ENSCPOG00000019646	-	100	52.153	ENSOCUG00000000299	-	100	52.153	Oryctolagus_cuniculus
ENSCPOG00000019646	-	100	52.153	ENSOCUG00000027473	-	100	52.153	Oryctolagus_cuniculus
ENSCPOG00000019646	-	78	75.510	ENSORLG00000012891	lin28b	51	65.574	Oryzias_latipes
ENSCPOG00000019646	-	100	36.715	ENSOMEG00000018521	si:ch1073-284b18.2	100	37.198	Oryzias_melastigma
ENSCPOG00000019646	-	100	52.632	ENSOGAG00000003971	LIN28A	100	52.632	Otolemur_garnettii
ENSCPOG00000019646	-	99	47.343	ENSOARG00000003913	-	70	86.111	Ovis_aries
ENSCPOG00000019646	-	100	52.709	ENSPPAG00000012576	-	100	52.709	Pan_paniscus
ENSCPOG00000019646	-	100	52.632	ENSPPAG00000037906	LIN28A	100	52.632	Pan_paniscus
ENSCPOG00000019646	-	100	51.905	ENSPPRG00000009198	LIN28A	100	48.571	Panthera_pardus
ENSCPOG00000019646	-	100	53.202	ENSPTRG00000049314	-	100	53.202	Pan_troglodytes
ENSCPOG00000019646	-	100	52.153	ENSPTRG00000000384	LIN28A	100	52.153	Pan_troglodytes
ENSCPOG00000019646	-	100	52.153	ENSPANG00000009841	LIN28A	100	52.153	Papio_anubis
ENSCPOG00000019646	-	63	71.698	ENSPMGG00000022825	lin28b	55	37.419	Periophthalmus_magnuspinnatus
ENSCPOG00000019646	-	100	53.589	ENSPEMG00000012419	Lin28a	100	53.589	Peromyscus_maniculatus_bairdii
ENSCPOG00000019646	-	100	51.675	ENSPCIG00000012691	LIN28A	100	48.804	Phascolarctos_cinereus
ENSCPOG00000019646	-	55	85.366	ENSPFOG00000019352	lin28b	51	70.732	Poecilia_formosa
ENSCPOG00000019646	-	55	85.366	ENSPLAG00000009101	lin28b	51	70.732	Poecilia_latipinna
ENSCPOG00000019646	-	88	59.459	ENSPMEG00000015694	lin28b	51	70.732	Poecilia_mexicana
ENSCPOG00000019646	-	100	52.632	ENSPPYG00000001684	LIN28A	100	52.632	Pongo_abelii
ENSCPOG00000019646	-	100	55.769	ENSPCAG00000013674	LIN28A	100	53.846	Procavia_capensis
ENSCPOG00000019646	-	100	44.776	ENSPCOG00000019441	-	100	44.776	Propithecus_coquereli
ENSCPOG00000019646	-	100	53.589	ENSPCOG00000026551	-	100	53.589	Propithecus_coquereli
ENSCPOG00000019646	-	100	57.447	ENSPCOG00000016166	-	100	55.319	Propithecus_coquereli
ENSCPOG00000019646	-	92	78.689	ENSPNAG00000015739	si:ch1073-284b18.2	63	78.689	Pygocentrus_nattereri
ENSCPOG00000019646	-	63	70.588	ENSPNAG00000002632	lin28b	50	70.270	Pygocentrus_nattereri
ENSCPOG00000019646	-	95	67.692	ENSPNAG00000019008	lin28a	53	82.051	Pygocentrus_nattereri
ENSCPOG00000019646	-	100	53.589	ENSRNOG00000060320	Lin28a	100	53.589	Rattus_norvegicus
ENSCPOG00000019646	-	100	51.675	ENSRBIG00000032004	LIN28A	100	51.675	Rhinopithecus_bieti
ENSCPOG00000019646	-	100	59.500	ENSRBIG00000011346	-	100	59.500	Rhinopithecus_bieti
ENSCPOG00000019646	-	100	51.675	ENSRROG00000013874	LIN28A	100	51.675	Rhinopithecus_roxellana
ENSCPOG00000019646	-	100	59.000	ENSRROG00000032651	-	100	59.000	Rhinopithecus_roxellana
ENSCPOG00000019646	-	72	94.737	ENSSBOG00000005545	-	64	94.737	Saimiri_boliviensis_boliviensis
ENSCPOG00000019646	-	100	56.995	ENSSBOG00000031930	-	100	56.995	Saimiri_boliviensis_boliviensis
ENSCPOG00000019646	-	100	49.761	ENSSBOG00000033280	-	100	45.933	Saimiri_boliviensis_boliviensis
ENSCPOG00000019646	-	86	81.132	ENSSFOG00015006164	lin28a	69	69.444	Scleropages_formosus
ENSCPOG00000019646	-	56	78.049	ENSSMAG00000020241	lin28a	61	72.500	Scophthalmus_maximus
ENSCPOG00000019646	-	78	80.000	ENSSDUG00000011644	lin28a	57	80.000	Seriola_dumerili
ENSCPOG00000019646	-	79	80.488	ENSSLDG00000020568	lin28a	56	72.500	Seriola_lalandi_dorsalis
ENSCPOG00000019646	-	72	82.927	ENSSPAG00000018737	lin28a	50	75.472	Stegastes_partitus
ENSCPOG00000019646	-	100	51.675	ENSSSCG00000003557	LIN28A	100	48.325	Sus_scrofa
ENSCPOG00000019646	-	100	42.529	ENSSSCG00000039497	-	100	41.379	Sus_scrofa
ENSCPOG00000019646	-	100	51.905	ENSUAMG00000006984	LIN28A	100	48.571	Ursus_americanus
ENSCPOG00000019646	-	100	51.905	ENSUMAG00000012579	LIN28A	100	48.571	Ursus_maritimus
ENSCPOG00000019646	-	100	50.251	ENSVVUG00000010329	-	100	46.667	Vulpes_vulpes
ENSCPOG00000019646	-	100	51.905	ENSVVUG00000011926	-	100	48.571	Vulpes_vulpes
ENSCPOG00000019646	-	93	73.333	ENSXETG00000012324	lin28a	67	66.667	Xenopus_tropicalis
ENSCPOG00000019646	-	55	85.366	ENSXMAG00000003450	lin28b	51	73.171	Xiphophorus_maculatus