EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCPOG00000022385 (Gene tree)
Gene ID: 100734481
Gene Symbol: PRDM4
Alias: PFM1
Full Name: PR/SET domain 4
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Minus strand
Length: 38546 bases
Position: chrDS562995.1:469479-508024
Accession: 100734481
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000032632	zf-C2H2	PF00096.26	3.6e-19	1	3
ENSCPOP00000032632	zf-C2H2	PF00096.26	3.6e-19	2	3
ENSCPOP00000032632	zf-C2H2	PF00096.26	3.6e-19	3	3
ENSCPOP00000013027	zf-C2H2	PF00096.26	2.1e-17	1	2
ENSCPOP00000013027	zf-C2H2	PF00096.26	2.1e-17	2	2
ENSCPOP00000016082	zf-C2H2	PF00096.26	5.6e-16	1	2
ENSCPOP00000016082	zf-C2H2	PF00096.26	5.6e-16	2	2
ENSCPOP00000013027	RtcB	PF01139.17	8.7e-145	1	1
ENSCPOP00000032632	zf-met	PF12874.7	0.00012	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000027978	PRDM4-203	2376	-	ENSCPOP00000016082	792 (aa)	-	H0VZF0
ENSCPOT00000035647	PRDM4-202	4068	XM_003462310	ENSCPOP00000032632	805 (aa)	XP_003462358	A0A286Y543
ENSCPOT00000014606	PRDM4-201	5208	-	ENSCPOP00000013027	1310 (aa)	-	H0VR32

Gene Model

Click here to download ENSCPOG00000022385's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000022385's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000022385	PRDM4	100	90.062	ENSG00000110851	PRDM4	95	97.183	Homo_sapiens
ENSCPOG00000022385	PRDM4	100	90.447	ENSAMEG00000016174	PRDM4	99	90.447	Ailuropoda_melanoleuca
ENSCPOG00000022385	PRDM4	100	82.857	ENSAPLG00000009846	PRDM4	99	82.733	Anas_platyrhynchos
ENSCPOG00000022385	PRDM4	100	90.186	ENSANAG00000024800	PRDM4	99	89.193	Aotus_nancymaae
ENSCPOG00000022385	PRDM4	100	90.311	ENSBTAG00000012999	PRDM4	99	90.311	Bos_taurus
ENSCPOG00000022385	PRDM4	100	90.186	ENSCJAG00000015261	PRDM4	99	90.311	Callithrix_jacchus
ENSCPOG00000022385	PRDM4	100	90.932	ENSCAFG00000001788	PRDM4	99	90.932	Canis_familiaris
ENSCPOG00000022385	PRDM4	100	90.932	ENSCAFG00020004916	PRDM4	99	90.932	Canis_lupus_dingo
ENSCPOG00000022385	PRDM4	100	90.311	ENSCHIG00000019409	PRDM4	99	90.311	Capra_hircus
ENSCPOG00000022385	PRDM4	100	90.186	ENSTSYG00000009248	PRDM4	99	90.186	Carlito_syrichta
ENSCPOG00000022385	PRDM4	100	98.882	ENSCAPG00000013937	PRDM4	99	98.882	Cavia_aperea
ENSCPOG00000022385	PRDM4	100	90.311	ENSCCAG00000036033	PRDM4	99	90.435	Cebus_capucinus
ENSCPOG00000022385	PRDM4	100	89.689	ENSCATG00000044797	PRDM4	99	89.814	Cercocebus_atys
ENSCPOG00000022385	PRDM4	100	91.010	ENSCLAG00000007545	PRDM4	100	90.764	Chinchilla_lanigera
ENSCPOG00000022385	PRDM4	100	90.062	ENSCSAG00000002896	PRDM4	99	90.186	Chlorocebus_sabaeus
ENSCPOG00000022385	PRDM4	71	96.226	ENSCHOG00000001744	PRDM4	82	96.226	Choloepus_hoffmanni
ENSCPOG00000022385	PRDM4	100	83.230	ENSCPBG00000023187	PRDM4	100	83.230	Chrysemys_picta_bellii
ENSCPOG00000022385	PRDM4	100	89.814	ENSCANG00000021804	PRDM4	99	89.938	Colobus_angolensis_palliatus
ENSCPOG00000022385	PRDM4	100	87.562	ENSCGRG00001015102	-	100	87.562	Cricetulus_griseus_chok1gshd
ENSCPOG00000022385	PRDM4	96	87.484	ENSCGRG00000004044	-	100	87.484	Cricetulus_griseus_crigri
ENSCPOG00000022385	PRDM4	100	88.944	ENSDNOG00000032478	PRDM4	99	90.714	Dasypus_novemcinctus
ENSCPOG00000022385	PRDM4	100	75.836	ENSDORG00000015081	-	100	76.238	Dipodomys_ordii
ENSCPOG00000022385	PRDM4	94	45.886	ENSEBUG00000003775	prdm4	99	45.879	Eptatretus_burgeri
ENSCPOG00000022385	PRDM4	100	90.062	ENSECAG00000015423	PRDM4	99	90.062	Equus_caballus
ENSCPOG00000022385	PRDM4	94	86.298	ENSEEUG00000006569	PRDM4	99	86.298	Erinaceus_europaeus
ENSCPOG00000022385	PRDM4	99	59.564	ENSELUG00000015265	prdm4	99	59.129	Esox_lucius
ENSCPOG00000022385	PRDM4	100	90.807	ENSFCAG00000022478	PRDM4	99	90.807	Felis_catus
ENSCPOG00000022385	PRDM4	100	82.484	ENSFALG00000013342	PRDM4	100	82.484	Ficedula_albicollis
ENSCPOG00000022385	PRDM4	100	82.900	ENSGALG00000012619	PRDM4	99	82.776	Gallus_gallus
ENSCPOG00000022385	PRDM4	100	83.230	ENSGAGG00000002763	PRDM4	95	83.230	Gopherus_agassizii
ENSCPOG00000022385	PRDM4	100	89.938	ENSGGOG00000001244	PRDM4	99	90.062	Gorilla_gorilla
ENSCPOG00000022385	PRDM4	100	90.435	ENSHGLG00000004590	PRDM4	98	90.435	Heterocephalus_glaber_female
ENSCPOG00000022385	PRDM4	100	89.299	ENSHGLG00100007464	PRDM4	100	89.299	Heterocephalus_glaber_male
ENSCPOG00000022385	PRDM4	95	60.540	ENSIPUG00000024162	prdm4	94	60.540	Ictalurus_punctatus
ENSCPOG00000022385	PRDM4	100	89.317	ENSSTOG00000016168	PRDM4	99	89.441	Ictidomys_tridecemlineatus
ENSCPOG00000022385	PRDM4	100	88.015	ENSJJAG00000022448	-	95	87.263	Jaculus_jaculus
ENSCPOG00000022385	PRDM4	100	70.516	ENSLACG00000007452	PRDM4	99	70.762	Latimeria_chalumnae
ENSCPOG00000022385	PRDM4	79	41.558	ENSLOCG00000017092	prdm4	100	53.680	Lepisosteus_oculatus
ENSCPOG00000022385	PRDM4	94	91.373	ENSLAFG00000001483	PRDM4	100	89.824	Loxodonta_africana
ENSCPOG00000022385	PRDM4	100	90.062	ENSMFAG00000041862	PRDM4	99	90.186	Macaca_fascicularis
ENSCPOG00000022385	PRDM4	100	90.062	ENSMMUG00000015550	PRDM4	99	90.186	Macaca_mulatta
ENSCPOG00000022385	PRDM4	100	90.062	ENSMNEG00000032319	PRDM4	99	90.186	Macaca_nemestrina
ENSCPOG00000022385	PRDM4	100	89.938	ENSMLEG00000039607	PRDM4	99	90.062	Mandrillus_leucophaeus
ENSCPOG00000022385	PRDM4	100	75.248	ENSMGAG00000012815	PRDM4	100	75.124	Meleagris_gallopavo
ENSCPOG00000022385	PRDM4	100	88.820	ENSMICG00000007807	PRDM4	99	88.820	Microcebus_murinus
ENSCPOG00000022385	PRDM4	100	89.317	ENSMOCG00000000753	Prdm4	99	89.317	Microtus_ochrogaster
ENSCPOG00000022385	PRDM4	100	88.323	ENSMUSG00000035529	Prdm4	100	88.323	Mus_musculus
ENSCPOG00000022385	PRDM4	100	88.696	MGP_PahariEiJ_G0031398	Prdm4	100	88.696	Mus_pahari
ENSCPOG00000022385	PRDM4	100	88.323	MGP_SPRETEiJ_G0016505	Prdm4	100	88.323	Mus_spretus
ENSCPOG00000022385	PRDM4	100	84.549	ENSMPUG00000012238	PRDM4	99	83.807	Mustela_putorius_furo
ENSCPOG00000022385	PRDM4	100	90.062	ENSMLUG00000000767	PRDM4	99	90.062	Myotis_lucifugus
ENSCPOG00000022385	PRDM4	100	89.068	ENSNGAG00000018627	Prdm4	100	89.068	Nannospalax_galili
ENSCPOG00000022385	PRDM4	100	90.062	ENSNLEG00000006748	PRDM4	99	90.186	Nomascus_leucogenys
ENSCPOG00000022385	PRDM4	90	86.682	ENSMEUG00000004495	PRDM4	89	86.215	Notamacropus_eugenii
ENSCPOG00000022385	PRDM4	89	90.027	ENSOPRG00000010192	PRDM4	89	90.237	Ochotona_princeps
ENSCPOG00000022385	PRDM4	100	89.317	ENSODEG00000014750	PRDM4	99	90.062	Octodon_degus
ENSCPOG00000022385	PRDM4	100	86.087	ENSOANG00000005526	PRDM4	99	85.839	Ornithorhynchus_anatinus
ENSCPOG00000022385	PRDM4	94	92.340	ENSOCUG00000012859	PRDM4	96	92.340	Oryctolagus_cuniculus
ENSCPOG00000022385	PRDM4	100	89.938	ENSOGAG00000011945	PRDM4	100	89.441	Otolemur_garnettii
ENSCPOG00000022385	PRDM4	100	89.938	ENSOARG00000017955	PRDM4	99	89.938	Ovis_aries
ENSCPOG00000022385	PRDM4	100	90.062	ENSPPAG00000038438	PRDM4	99	90.186	Pan_paniscus
ENSCPOG00000022385	PRDM4	100	90.807	ENSPPRG00000004144	PRDM4	99	90.807	Panthera_pardus
ENSCPOG00000022385	PRDM4	100	90.807	ENSPTIG00000005847	PRDM4	99	90.807	Panthera_tigris_altaica
ENSCPOG00000022385	PRDM4	100	90.062	ENSPTRG00000005400	PRDM4	99	90.186	Pan_troglodytes
ENSCPOG00000022385	PRDM4	100	90.062	ENSPANG00000022084	PRDM4	99	90.186	Papio_anubis
ENSCPOG00000022385	PRDM4	99	59.717	ENSPKIG00000000875	prdm4	99	59.080	Paramormyrops_kingsleyae
ENSCPOG00000022385	PRDM4	90	76.438	ENSPSIG00000012066	PRDM4	100	76.994	Pelodiscus_sinensis
ENSCPOG00000022385	PRDM4	100	89.689	ENSPEMG00000014598	Prdm4	100	89.689	Peromyscus_maniculatus_bairdii
ENSCPOG00000022385	PRDM4	100	86.262	ENSPCIG00000009471	PRDM4	99	86.015	Phascolarctos_cinereus
ENSCPOG00000022385	PRDM4	100	90.435	ENSPPYG00000004913	PRDM4	99	90.559	Pongo_abelii
ENSCPOG00000022385	PRDM4	83	93.182	ENSPCAG00000009987	PRDM4	83	93.182	Procavia_capensis
ENSCPOG00000022385	PRDM4	100	88.571	ENSPCOG00000021060	PRDM4	99	88.571	Propithecus_coquereli
ENSCPOG00000022385	PRDM4	100	90.062	ENSPVAG00000001596	PRDM4	99	90.062	Pteropus_vampyrus
ENSCPOG00000022385	PRDM4	100	88.696	ENSRNOG00000004962	Prdm4	100	88.696	Rattus_norvegicus
ENSCPOG00000022385	PRDM4	100	89.814	ENSRBIG00000035488	PRDM4	99	89.938	Rhinopithecus_bieti
ENSCPOG00000022385	PRDM4	100	89.938	ENSRROG00000012779	PRDM4	99	90.062	Rhinopithecus_roxellana
ENSCPOG00000022385	PRDM4	100	90.186	ENSSBOG00000000403	PRDM4	99	90.311	Saimiri_boliviensis_boliviensis
ENSCPOG00000022385	PRDM4	99	62.805	ENSSFOG00015023358	prdm4	98	62.149	Scleropages_formosus
ENSCPOG00000022385	PRDM4	100	90.186	ENSSSCG00000000160	PRDM4	99	90.186	Sus_scrofa
ENSCPOG00000022385	PRDM4	100	83.230	ENSTGUG00000010962	-	100	82.818	Taeniopygia_guttata
ENSCPOG00000022385	PRDM4	80	79.112	ENSTBEG00000001732	PRDM4	84	83.108	Tupaia_belangeri
ENSCPOG00000022385	PRDM4	100	90.559	ENSTTRG00000011056	PRDM4	99	90.559	Tursiops_truncatus
ENSCPOG00000022385	PRDM4	100	90.435	ENSUAMG00000022796	PRDM4	99	90.435	Ursus_americanus
ENSCPOG00000022385	PRDM4	100	90.435	ENSUMAG00000017231	PRDM4	99	90.435	Ursus_maritimus
ENSCPOG00000022385	PRDM4	100	90.435	ENSVPAG00000002215	PRDM4	100	90.435	Vicugna_pacos
ENSCPOG00000022385	PRDM4	100	90.932	ENSVVUG00000023397	PRDM4	99	90.932	Vulpes_vulpes