EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPOG00000024117 (Gene tree)
Gene ID: 100734882
Gene Symbol: LSM4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Minus strand
Length: 5597 bases
Position: chrDS562927.1:8017129-8022725
Accession: 100734882
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000019796	LSM	PF01423.22	7.7e-17	1	1
ENSCPOP00000032419	LSM	PF01423.22	7.7e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000042413	LSM4-201	882	-	ENSCPOP00000025725	104 (aa)	-	A0A286XJQ5
ENSCPOT00000030931	LSM4-202	854	XM_003465095	ENSCPOP00000032419	139 (aa)	XP_003465143	H0W9Y6
ENSCPOT00000019526	LSM4-204	420	-	ENSCPOP00000019796	139 (aa)	-	H0W9Y6
ENSCPOT00000032984	LSM4-203	321	-	ENSCPOP00000022451	106 (aa)	-	A0A286XAK8

Gene Model

Click here to download ENSCPOG00000024117's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000024117's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPOG00000024117	LSM4	52	34.722	ENSCPOG00000033102	-	56	34.722
ENSCPOG00000024117	LSM4	71	32.673	ENSCPOG00000021053	LSM2	93	34.444

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000024117	LSM4	100	97.842	ENSG00000130520	LSM4	100	97.842	Homo_sapiens
ENSCPOG00000024117	LSM4	71	95.960	ENSAPOG00000005643	lsm4	58	97.727	Acanthochromis_polyacanthus
ENSCPOG00000024117	LSM4	99	97.826	ENSAMEG00000011162	LSM4	95	97.826	Ailuropoda_melanoleuca
ENSCPOG00000024117	LSM4	96	77.857	ENSAOCG00000006414	lsm4	59	97.727	Amphiprion_ocellaris
ENSCPOG00000024117	LSM4	71	95.960	ENSAPEG00000006238	lsm4	59	97.727	Amphiprion_percula
ENSCPOG00000024117	LSM4	71	95.960	ENSATEG00000016559	lsm4	58	97.727	Anabas_testudineus
ENSCPOG00000024117	LSM4	100	97.842	ENSANAG00000034659	LSM4	100	97.842	Aotus_nancymaae
ENSCPOG00000024117	LSM4	79	83.871	ENSACLG00000022738	lsm4	60	97.727	Astatotilapia_calliptera
ENSCPOG00000024117	LSM4	99	80.714	ENSAMXG00000016932	lsm4	62	96.591	Astyanax_mexicanus
ENSCPOG00000024117	LSM4	100	97.842	ENSBTAG00000008578	LSM4	100	97.842	Bos_taurus
ENSCPOG00000024117	LSM4	60	74.699	WBGene00003078	lsm-4	67	75.610	Caenorhabditis_elegans
ENSCPOG00000024117	LSM4	100	97.842	ENSCJAG00000014171	LSM4	100	97.842	Callithrix_jacchus
ENSCPOG00000024117	LSM4	99	97.826	ENSCAFG00000014900	LSM4	90	97.826	Canis_familiaris
ENSCPOG00000024117	LSM4	100	97.842	ENSCAFG00020012137	LSM4	100	97.842	Canis_lupus_dingo
ENSCPOG00000024117	LSM4	99	97.826	ENSCHIG00000010928	LSM4	91	97.826	Capra_hircus
ENSCPOG00000024117	LSM4	100	98.561	ENSTSYG00000030906	LSM4	100	98.561	Carlito_syrichta
ENSCPOG00000024117	LSM4	100	100.000	ENSCAPG00000014140	LSM4	100	100.000	Cavia_aperea
ENSCPOG00000024117	LSM4	100	97.842	ENSCCAG00000036308	LSM4	100	97.842	Cebus_capucinus
ENSCPOG00000024117	LSM4	100	97.842	ENSCATG00000029311	LSM4	100	97.842	Cercocebus_atys
ENSCPOG00000024117	LSM4	100	95.683	ENSCLAG00000010828	LSM4	100	95.683	Chinchilla_lanigera
ENSCPOG00000024117	LSM4	100	97.842	ENSCSAG00000005370	LSM4	100	97.842	Chlorocebus_sabaeus
ENSCPOG00000024117	LSM4	100	81.295	ENSCPBG00000012925	LSM4	100	88.489	Chrysemys_picta_bellii
ENSCPOG00000024117	LSM4	62	91.860	ENSCING00000007519	-	69	92.045	Ciona_intestinalis
ENSCPOG00000024117	LSM4	62	93.023	ENSCSAVG00000008596	-	70	93.182	Ciona_savignyi
ENSCPOG00000024117	LSM4	100	97.842	ENSCANG00000043686	LSM4	100	97.842	Colobus_angolensis_palliatus
ENSCPOG00000024117	LSM4	100	94.964	ENSCGRG00001014436	Lsm4	100	94.964	Cricetulus_griseus_chok1gshd
ENSCPOG00000024117	LSM4	99	94.928	ENSCGRG00000009398	Lsm4	100	94.928	Cricetulus_griseus_crigri
ENSCPOG00000024117	LSM4	70	94.845	ENSCSEG00000016127	lsm4	62	96.591	Cynoglossus_semilaevis
ENSCPOG00000024117	LSM4	96	77.778	ENSCVAG00000010601	lsm4	62	96.591	Cyprinodon_variegatus
ENSCPOG00000024117	LSM4	86	75.000	ENSCVAG00000021828	lsm4	56	95.890	Cyprinodon_variegatus
ENSCPOG00000024117	LSM4	99	77.622	ENSDARG00000023852	lsm4	62	97.727	Danio_rerio
ENSCPOG00000024117	LSM4	100	95.683	ENSDORG00000024225	Lsm4	100	95.683	Dipodomys_ordii
ENSCPOG00000024117	LSM4	70	82.474	FBgn0032240	CG17768	57	89.773	Drosophila_melanogaster
ENSCPOG00000024117	LSM4	89	95.968	ENSETEG00000007762	-	100	95.968	Echinops_telfairi
ENSCPOG00000024117	LSM4	54	93.333	ENSEBUG00000003639	-	50	93.333	Eptatretus_burgeri
ENSCPOG00000024117	LSM4	100	97.842	ENSECAG00000010141	LSM4	57	97.842	Equus_caballus
ENSCPOG00000024117	LSM4	95	83.582	ENSELUG00000012821	lsm4	66	97.701	Esox_lucius
ENSCPOG00000024117	LSM4	100	97.842	ENSFCAG00000040580	LSM4	100	97.842	Felis_catus
ENSCPOG00000024117	LSM4	99	80.435	ENSFALG00000009478	LSM4	99	88.406	Ficedula_albicollis
ENSCPOG00000024117	LSM4	99	96.377	ENSFDAG00000010124	LSM4	100	96.377	Fukomys_damarensis
ENSCPOG00000024117	LSM4	69	95.833	ENSGMOG00000007729	lsm4	59	97.701	Gadus_morhua
ENSCPOG00000024117	LSM4	100	80.576	ENSGALG00000003385	LSM4	100	88.489	Gallus_gallus
ENSCPOG00000024117	LSM4	79	83.065	ENSGAFG00000004903	lsm4	55	93.151	Gambusia_affinis
ENSCPOG00000024117	LSM4	68	96.842	ENSGACG00000008140	lsm4	59	97.727	Gasterosteus_aculeatus
ENSCPOG00000024117	LSM4	100	81.295	ENSGAGG00000017812	LSM4	100	88.489	Gopherus_agassizii
ENSCPOG00000024117	LSM4	100	97.842	ENSGGOG00000012914	-	100	97.842	Gorilla_gorilla
ENSCPOG00000024117	LSM4	100	96.403	ENSHGLG00000006568	LSM4	100	96.403	Heterocephalus_glaber_female
ENSCPOG00000024117	LSM4	67	98.925	ENSHGLG00100007894	LSM4	100	98.925	Heterocephalus_glaber_male
ENSCPOG00000024117	LSM4	96	77.612	ENSHCOG00000008819	lsm4	62	97.727	Hippocampus_comes
ENSCPOG00000024117	LSM4	99	80.714	ENSIPUG00000005368	Lsm4	62	97.727	Ictalurus_punctatus
ENSCPOG00000024117	LSM4	100	97.842	ENSSTOG00000016494	LSM4	100	97.842	Ictidomys_tridecemlineatus
ENSCPOG00000024117	LSM4	100	96.403	ENSJJAG00000017420	Lsm4	100	96.403	Jaculus_jaculus
ENSCPOG00000024117	LSM4	62	96.512	ENSKMAG00000005073	lsm4	61	96.591	Kryptolebias_marmoratus
ENSCPOG00000024117	LSM4	71	95.960	ENSLBEG00000027930	lsm4	59	97.727	Labrus_bergylta
ENSCPOG00000024117	LSM4	97	82.963	ENSLACG00000015861	LSM4	96	82.963	Latimeria_chalumnae
ENSCPOG00000024117	LSM4	93	82.946	ENSLOCG00000002025	lsm4	62	96.591	Lepisosteus_oculatus
ENSCPOG00000024117	LSM4	99	96.377	ENSLAFG00000017459	LSM4	99	96.377	Loxodonta_africana
ENSCPOG00000024117	LSM4	100	97.842	ENSMFAG00000031194	LSM4	100	97.842	Macaca_fascicularis
ENSCPOG00000024117	LSM4	100	97.842	ENSMMUG00000004405	LSM4	100	97.842	Macaca_mulatta
ENSCPOG00000024117	LSM4	100	97.842	ENSMNEG00000042899	LSM4	100	97.842	Macaca_nemestrina
ENSCPOG00000024117	LSM4	100	97.842	ENSMLEG00000027948	LSM4	100	97.842	Mandrillus_leucophaeus
ENSCPOG00000024117	LSM4	96	80.000	ENSMAMG00000006190	lsm4	62	97.727	Mastacembelus_armatus
ENSCPOG00000024117	LSM4	79	83.871	ENSMZEG00005016420	lsm4	60	97.727	Maylandia_zebra
ENSCPOG00000024117	LSM4	99	82.014	ENSMGAG00000004976	LSM4	99	88.406	Meleagris_gallopavo
ENSCPOG00000024117	LSM4	100	97.122	ENSMICG00000000222	LSM4	100	97.122	Microcebus_murinus
ENSCPOG00000024117	LSM4	100	95.683	ENSMOCG00000020861	Lsm4	100	95.683	Microtus_ochrogaster
ENSCPOG00000024117	LSM4	89	93.548	ENSMODG00000015044	-	100	93.548	Monodelphis_domestica
ENSCPOG00000024117	LSM4	96	77.372	ENSMALG00000018159	lsm4	62	96.591	Monopterus_albus
ENSCPOG00000024117	LSM4	100	95.683	MGP_CAROLIEiJ_G0031158	Lsm4	100	95.683	Mus_caroli
ENSCPOG00000024117	LSM4	100	95.683	ENSMUSG00000031848	Lsm4	100	95.683	Mus_musculus
ENSCPOG00000024117	LSM4	100	95.683	MGP_PahariEiJ_G0021623	Lsm4	100	95.683	Mus_pahari
ENSCPOG00000024117	LSM4	100	95.683	MGP_SPRETEiJ_G0032276	Lsm4	100	95.683	Mus_spretus
ENSCPOG00000024117	LSM4	100	97.842	ENSMPUG00000015589	LSM4	100	97.842	Mustela_putorius_furo
ENSCPOG00000024117	LSM4	99	97.826	ENSMLUG00000004010	LSM4	99	97.826	Myotis_lucifugus
ENSCPOG00000024117	LSM4	100	95.683	ENSNGAG00000008644	Lsm4	100	95.683	Nannospalax_galili
ENSCPOG00000024117	LSM4	71	95.918	ENSNBRG00000022150	lsm4	54	97.701	Neolamprologus_brichardi
ENSCPOG00000024117	LSM4	89	90.323	ENSMEUG00000013229	LSM4	100	90.323	Notamacropus_eugenii
ENSCPOG00000024117	LSM4	89	91.129	ENSOPRG00000005575	LSM4	100	81.452	Ochotona_princeps
ENSCPOG00000024117	LSM4	100	86.331	ENSODEG00000004519	-	100	73.381	Octodon_degus
ENSCPOG00000024117	LSM4	100	96.403	ENSODEG00000020549	-	100	96.403	Octodon_degus
ENSCPOG00000024117	LSM4	100	72.662	ENSODEG00000011712	-	100	72.662	Octodon_degus
ENSCPOG00000024117	LSM4	79	83.871	ENSONIG00000012724	lsm4	60	97.727	Oreochromis_niloticus
ENSCPOG00000024117	LSM4	63	92.308	ENSOANG00000007434	LSM4	78	92.308	Ornithorhynchus_anatinus
ENSCPOG00000024117	LSM4	97	73.154	ENSORLG00000008391	lsm4	61	96.591	Oryzias_latipes
ENSCPOG00000024117	LSM4	97	73.154	ENSORLG00020014829	lsm4	61	96.591	Oryzias_latipes_hni
ENSCPOG00000024117	LSM4	97	72.483	ENSORLG00015010205	lsm4	61	96.591	Oryzias_latipes_hsok
ENSCPOG00000024117	LSM4	100	82.734	ENSOMEG00000003606	lsm4	61	96.591	Oryzias_melastigma
ENSCPOG00000024117	LSM4	71	96.970	ENSOGAG00000027992	LSM4	60	98.851	Otolemur_garnettii
ENSCPOG00000024117	LSM4	95	96.970	ENSOARG00000012553	LSM4	94	98.319	Ovis_aries
ENSCPOG00000024117	LSM4	100	97.842	ENSPPAG00000044045	-	100	97.842	Pan_paniscus
ENSCPOG00000024117	LSM4	100	97.842	ENSPPRG00000018264	LSM4	100	97.842	Panthera_pardus
ENSCPOG00000024117	LSM4	99	97.826	ENSPTIG00000006306	LSM4	100	97.826	Panthera_tigris_altaica
ENSCPOG00000024117	LSM4	100	97.842	ENSPTRG00000031470	LSM4	100	97.842	Pan_troglodytes
ENSCPOG00000024117	LSM4	100	97.842	ENSPANG00000014399	LSM4	100	97.842	Papio_anubis
ENSCPOG00000024117	LSM4	99	81.295	ENSPKIG00000006154	lsm4	62	97.727	Paramormyrops_kingsleyae
ENSCPOG00000024117	LSM4	99	80.435	ENSPSIG00000012358	LSM4	100	88.406	Pelodiscus_sinensis
ENSCPOG00000024117	LSM4	100	95.683	ENSPEMG00000001358	Lsm4	100	95.683	Peromyscus_maniculatus_bairdii
ENSCPOG00000024117	LSM4	90	79.545	ENSPLAG00000016267	lsm4	62	97.727	Poecilia_latipinna
ENSCPOG00000024117	LSM4	96	78.676	ENSPMEG00000016378	lsm4	63	97.701	Poecilia_mexicana
ENSCPOG00000024117	LSM4	100	97.842	ENSPPYG00000009736	LSM4	100	97.842	Pongo_abelii
ENSCPOG00000024117	LSM4	89	95.968	ENSPCAG00000008513	LSM4	100	95.968	Procavia_capensis
ENSCPOG00000024117	LSM4	100	97.122	ENSPCOG00000019837	LSM4	100	97.122	Propithecus_coquereli
ENSCPOG00000024117	LSM4	100	97.842	ENSPVAG00000015383	LSM4	100	97.842	Pteropus_vampyrus
ENSCPOG00000024117	LSM4	79	83.871	ENSPNYG00000016794	lsm4	60	97.727	Pundamilia_nyererei
ENSCPOG00000024117	LSM4	96	82.836	ENSPNAG00000016598	lsm4	65	97.701	Pygocentrus_nattereri
ENSCPOG00000024117	LSM4	100	95.683	ENSRNOG00000019572	Lsm4	100	95.683	Rattus_norvegicus
ENSCPOG00000024117	LSM4	100	97.842	ENSRBIG00000024717	LSM4	100	97.842	Rhinopithecus_bieti
ENSCPOG00000024117	LSM4	100	97.842	ENSRROG00000045706	LSM4	100	97.842	Rhinopithecus_roxellana
ENSCPOG00000024117	LSM4	90	97.600	ENSSBOG00000022455	LSM4	100	97.600	Saimiri_boliviensis_boliviensis
ENSCPOG00000024117	LSM4	100	94.245	ENSSHAG00000011559	LSM4	100	94.245	Sarcophilus_harrisii
ENSCPOG00000024117	LSM4	96	80.597	ENSSFOG00015021067	lsm4	62	97.727	Scleropages_formosus
ENSCPOG00000024117	LSM4	71	94.949	ENSSMAG00000021020	lsm4	59	97.727	Scophthalmus_maximus
ENSCPOG00000024117	LSM4	71	95.960	ENSSDUG00000009588	lsm4	53	97.727	Seriola_dumerili
ENSCPOG00000024117	LSM4	71	95.960	ENSSLDG00000006827	lsm4	52	97.727	Seriola_lalandi_dorsalis
ENSCPOG00000024117	LSM4	63	97.701	ENSSPUG00000010166	LSM4	56	97.701	Sphenodon_punctatus
ENSCPOG00000024117	LSM4	71	95.960	ENSSPAG00000011615	lsm4	58	97.727	Stegastes_partitus
ENSCPOG00000024117	LSM4	100	97.842	ENSSSCG00000034314	LSM4	100	97.842	Sus_scrofa
ENSCPOG00000024117	LSM4	79	81.452	ENSTRUG00000021737	lsm4	62	95.455	Takifugu_rubripes
ENSCPOG00000024117	LSM4	96	81.022	ENSTNIG00000010191	lsm4	61	96.591	Tetraodon_nigroviridis
ENSCPOG00000024117	LSM4	99	97.826	ENSUAMG00000000665	LSM4	99	97.826	Ursus_americanus
ENSCPOG00000024117	LSM4	100	97.842	ENSUMAG00000009013	LSM4	100	97.842	Ursus_maritimus
ENSCPOG00000024117	LSM4	99	97.826	ENSVVUG00000008136	LSM4	71	97.826	Vulpes_vulpes
ENSCPOG00000024117	LSM4	100	89.209	ENSXETG00000024933	lsm4	100	87.050	Xenopus_tropicalis