EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCPOG00000025463 (Gene tree)
Gene ID: 100713813
Gene Symbol: UPF1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Plus strand
Length: 16295 bases
Position: chrDS562927.1:8282915-8299209
Accession: 100713813
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000015668	UPF1_Zn_bind	PF09416.10	5.7e-75	1	1
ENSCPOP00000015668	ResIII	PF04851.15	2.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000020719	UPF1-201	3330	XM_013147523	ENSCPOP00000015668	1109 (aa)	XP_013002977	H0VY86

Gene Model

Click here to download ENSCPOG00000025463's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000025463's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000025463	UPF1	100	96.463	ENSG00000005007	UPF1	100	96.463	Homo_sapiens
ENSCPOG00000025463	UPF1	100	92.633	ENSAPOG00000010916	-	100	92.722	Acanthochromis_polyacanthus
ENSCPOG00000025463	UPF1	100	91.398	ENSAPOG00000023773	upf1	100	91.667	Acanthochromis_polyacanthus
ENSCPOG00000025463	UPF1	100	96.711	ENSAMEG00000011474	UPF1	100	96.711	Ailuropoda_melanoleuca
ENSCPOG00000025463	UPF1	93	93.726	ENSACIG00000010985	-	100	93.822	Amphilophus_citrinellus
ENSCPOG00000025463	UPF1	100	91.226	ENSACIG00000019949	upf1	100	91.756	Amphilophus_citrinellus
ENSCPOG00000025463	UPF1	100	92.633	ENSAOCG00000006352	-	100	92.722	Amphiprion_ocellaris
ENSCPOG00000025463	UPF1	100	90.909	ENSAOCG00000018519	upf1	100	91.571	Amphiprion_ocellaris
ENSCPOG00000025463	UPF1	100	90.909	ENSAPEG00000016344	upf1	100	91.571	Amphiprion_percula
ENSCPOG00000025463	UPF1	100	92.633	ENSAPEG00000006292	-	100	92.722	Amphiprion_percula
ENSCPOG00000025463	UPF1	100	90.168	ENSATEG00000017867	upf1	100	91.054	Anabas_testudineus
ENSCPOG00000025463	UPF1	100	92.812	ENSATEG00000016606	-	100	92.902	Anabas_testudineus
ENSCPOG00000025463	UPF1	94	97.710	ENSAPLG00000009175	UPF1	99	97.710	Anas_platyrhynchos
ENSCPOG00000025463	UPF1	94	97.424	ENSANAG00000024107	UPF1	95	97.424	Aotus_nancymaae
ENSCPOG00000025463	UPF1	100	90.958	ENSACLG00000007181	upf1	100	91.487	Astatotilapia_calliptera
ENSCPOG00000025463	UPF1	100	92.626	ENSACLG00000022630	-	100	92.626	Astatotilapia_calliptera
ENSCPOG00000025463	UPF1	100	93.082	ENSAMXG00000042187	upf1	100	93.621	Astyanax_mexicanus
ENSCPOG00000025463	UPF1	100	96.549	ENSBTAG00000020922	UPF1	100	96.549	Bos_taurus
ENSCPOG00000025463	UPF1	89	50.990	WBGene00004880	smg-2	99	48.559	Caenorhabditis_elegans
ENSCPOG00000025463	UPF1	100	96.463	ENSCJAG00000019627	UPF1	100	96.463	Callithrix_jacchus
ENSCPOG00000025463	UPF1	100	96.293	ENSCAFG00000014578	UPF1	100	96.293	Canis_familiaris
ENSCPOG00000025463	UPF1	100	95.763	ENSCAFG00020012347	UPF1	100	95.763	Canis_lupus_dingo
ENSCPOG00000025463	UPF1	100	96.536	ENSCHIG00000011018	UPF1	100	96.536	Capra_hircus
ENSCPOG00000025463	UPF1	96	97.644	ENSTSYG00000008877	UPF1	99	97.644	Carlito_syrichta
ENSCPOG00000025463	UPF1	97	98.414	ENSCAPG00000005758	UPF1	97	98.414	Cavia_aperea
ENSCPOG00000025463	UPF1	100	97.150	ENSCCAG00000032175	UPF1	100	97.150	Cebus_capucinus
ENSCPOG00000025463	UPF1	95	98.667	ENSCATG00000040306	UPF1	98	98.667	Cercocebus_atys
ENSCPOG00000025463	UPF1	95	98.393	ENSCLAG00000004037	UPF1	99	98.950	Chinchilla_lanigera
ENSCPOG00000025463	UPF1	100	95.933	ENSCSAG00000005276	UPF1	100	95.933	Chlorocebus_sabaeus
ENSCPOG00000025463	UPF1	100	95.556	ENSCPBG00000012513	UPF1	100	95.556	Chrysemys_picta_bellii
ENSCPOG00000025463	UPF1	77	78.704	ENSCING00000021399	-	99	78.935	Ciona_intestinalis
ENSCPOG00000025463	UPF1	99	72.316	ENSCSAVG00000006533	-	99	72.460	Ciona_savignyi
ENSCPOG00000025463	UPF1	94	98.760	ENSCANG00000029819	UPF1	97	98.760	Colobus_angolensis_palliatus
ENSCPOG00000025463	UPF1	100	95.826	ENSCGRG00001021067	Upf1	100	95.826	Cricetulus_griseus_chok1gshd
ENSCPOG00000025463	UPF1	96	97.453	ENSCGRG00000013480	Upf1	99	97.453	Cricetulus_griseus_crigri
ENSCPOG00000025463	UPF1	100	86.613	ENSCSEG00000017239	upf1	100	86.882	Cynoglossus_semilaevis
ENSCPOG00000025463	UPF1	100	92.716	ENSCSEG00000016159	-	100	92.716	Cynoglossus_semilaevis
ENSCPOG00000025463	UPF1	100	92.543	ENSCVAG00000010561	upf1	100	92.543	Cyprinodon_variegatus
ENSCPOG00000025463	UPF1	100	92.902	ENSDARG00000016302	upf1	100	93.441	Danio_rerio
ENSCPOG00000025463	UPF1	96	94.643	ENSDORG00000009984	Upf1	96	94.643	Dipodomys_ordii
ENSCPOG00000025463	UPF1	85	71.503	FBgn0030354	Upf1	84	68.213	Drosophila_melanogaster
ENSCPOG00000025463	UPF1	55	84.702	ENSEBUG00000010069	upf1	96	85.575	Eptatretus_burgeri
ENSCPOG00000025463	UPF1	100	96.106	ENSEASG00005006549	UPF1	100	96.106	Equus_asinus_asinus
ENSCPOG00000025463	UPF1	100	96.106	ENSECAG00000010639	UPF1	100	96.106	Equus_caballus
ENSCPOG00000025463	UPF1	100	92.315	ENSELUG00000012916	-	100	92.493	Esox_lucius
ENSCPOG00000025463	UPF1	100	90.779	ENSELUG00000020917	upf1	100	91.137	Esox_lucius
ENSCPOG00000025463	UPF1	100	96.205	ENSFCAG00000009757	UPF1	100	96.205	Felis_catus
ENSCPOG00000025463	UPF1	94	97.243	ENSFALG00000009312	UPF1	96	97.243	Ficedula_albicollis
ENSCPOG00000025463	UPF1	96	97.381	ENSFDAG00000014816	UPF1	99	98.855	Fukomys_damarensis
ENSCPOG00000025463	UPF1	100	88.523	ENSFHEG00000006428	upf1	100	88.523	Fundulus_heteroclitus
ENSCPOG00000025463	UPF1	86	93.317	ENSFHEG00000016276	-	95	93.466	Fundulus_heteroclitus
ENSCPOG00000025463	UPF1	100	92.004	ENSGMOG00000007541	upf1	100	92.992	Gadus_morhua
ENSCPOG00000025463	UPF1	100	95.394	ENSGALG00000003220	UPF1	100	95.394	Gallus_gallus
ENSCPOG00000025463	UPF1	100	91.906	ENSGAFG00000004831	upf1	100	92.356	Gambusia_affinis
ENSCPOG00000025463	UPF1	63	93.759	ENSGAFG00000015443	-	88	91.484	Gambusia_affinis
ENSCPOG00000025463	UPF1	100	95.804	ENSGAGG00000022217	UPF1	100	95.804	Gopherus_agassizii
ENSCPOG00000025463	UPF1	94	98.187	ENSGGOG00000002608	UPF1	98	98.187	Gorilla_gorilla
ENSCPOG00000025463	UPF1	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSCPOG00000025463	UPF1	90	86.207	ENSHBUG00000014694	upf1	100	86.207	Haplochromis_burtoni
ENSCPOG00000025463	UPF1	100	96.463	ENSHGLG00000010900	UPF1	100	96.463	Heterocephalus_glaber_female
ENSCPOG00000025463	UPF1	98	94.388	ENSHGLG00100005904	UPF1	99	94.388	Heterocephalus_glaber_male
ENSCPOG00000025463	UPF1	100	91.727	ENSHCOG00000008918	upf1	100	92.632	Hippocampus_comes
ENSCPOG00000025463	UPF1	100	93.351	ENSIPUG00000005108	UPF1	100	93.801	Ictalurus_punctatus
ENSCPOG00000025463	UPF1	100	96.892	ENSSTOG00000009196	UPF1	100	96.892	Ictidomys_tridecemlineatus
ENSCPOG00000025463	UPF1	100	96.352	ENSJJAG00000023151	Upf1	100	96.352	Jaculus_jaculus
ENSCPOG00000025463	UPF1	100	92.812	ENSKMAG00000004962	upf1	100	92.812	Kryptolebias_marmoratus
ENSCPOG00000025463	UPF1	100	89.520	ENSLBEG00000014862	upf1	100	90.861	Labrus_bergylta
ENSCPOG00000025463	UPF1	100	92.543	ENSLBEG00000027848	-	100	92.633	Labrus_bergylta
ENSCPOG00000025463	UPF1	63	96.700	ENSLACG00000008482	UPF1	100	96.700	Latimeria_chalumnae
ENSCPOG00000025463	UPF1	100	95.144	ENSLOCG00000002072	upf1	100	95.144	Lepisosteus_oculatus
ENSCPOG00000025463	UPF1	100	96.375	ENSLAFG00000014963	UPF1	100	96.375	Loxodonta_africana
ENSCPOG00000025463	UPF1	100	97.150	ENSMFAG00000037748	UPF1	100	97.150	Macaca_fascicularis
ENSCPOG00000025463	UPF1	100	96.892	ENSMMUG00000023286	UPF1	100	96.892	Macaca_mulatta
ENSCPOG00000025463	UPF1	100	97.150	ENSMNEG00000000046	UPF1	100	97.150	Macaca_nemestrina
ENSCPOG00000025463	UPF1	94	98.760	ENSMLEG00000028404	UPF1	99	98.760	Mandrillus_leucophaeus
ENSCPOG00000025463	UPF1	100	91.824	ENSMAMG00000006231	-	100	92.363	Mastacembelus_armatus
ENSCPOG00000025463	UPF1	100	89.903	ENSMAMG00000006229	upf1	100	91.054	Mastacembelus_armatus
ENSCPOG00000025463	UPF1	100	90.000	ENSMZEG00005003489	upf1	100	91.192	Maylandia_zebra
ENSCPOG00000025463	UPF1	100	92.626	ENSMZEG00005016386	-	100	92.626	Maylandia_zebra
ENSCPOG00000025463	UPF1	94	97.235	ENSMGAG00000004745	UPF1	99	97.235	Meleagris_gallopavo
ENSCPOG00000025463	UPF1	94	98.187	ENSMAUG00000011398	Upf1	95	98.187	Mesocricetus_auratus
ENSCPOG00000025463	UPF1	100	95.933	ENSMICG00000001659	UPF1	100	95.933	Microcebus_murinus
ENSCPOG00000025463	UPF1	100	96.359	ENSMOCG00000005699	Upf1	100	96.359	Microtus_ochrogaster
ENSCPOG00000025463	UPF1	95	90.918	ENSMMOG00000007537	-	99	91.012	Mola_mola
ENSCPOG00000025463	UPF1	100	90.999	ENSMMOG00000007881	upf1	100	91.457	Mola_mola
ENSCPOG00000025463	UPF1	100	95.414	ENSMODG00000003689	UPF1	100	95.414	Monodelphis_domestica
ENSCPOG00000025463	UPF1	100	90.999	ENSMALG00000000144	upf1	100	91.179	Monopterus_albus
ENSCPOG00000025463	UPF1	100	91.316	ENSMALG00000018100	-	100	91.406	Monopterus_albus
ENSCPOG00000025463	UPF1	100	96.181	MGP_CAROLIEiJ_G0031142	Upf1	100	96.181	Mus_caroli
ENSCPOG00000025463	UPF1	100	96.181	ENSMUSG00000058301	Upf1	100	96.181	Mus_musculus
ENSCPOG00000025463	UPF1	100	96.181	MGP_PahariEiJ_G0021607	Upf1	100	96.181	Mus_pahari
ENSCPOG00000025463	UPF1	100	96.181	MGP_SPRETEiJ_G0032260	Upf1	100	96.181	Mus_spretus
ENSCPOG00000025463	UPF1	100	95.763	ENSMPUG00000015516	UPF1	100	95.763	Mustela_putorius_furo
ENSCPOG00000025463	UPF1	99	95.660	ENSMLUG00000012122	UPF1	99	95.660	Myotis_lucifugus
ENSCPOG00000025463	UPF1	100	96.103	ENSNGAG00000024107	Upf1	100	96.103	Nannospalax_galili
ENSCPOG00000025463	UPF1	100	90.114	ENSNBRG00000022069	-	100	92.596	Neolamprologus_brichardi
ENSCPOG00000025463	UPF1	100	89.257	ENSNBRG00000000670	upf1	100	89.785	Neolamprologus_brichardi
ENSCPOG00000025463	UPF1	94	92.939	ENSNLEG00000006062	UPF1	99	92.939	Nomascus_leucogenys
ENSCPOG00000025463	UPF1	83	93.333	ENSMEUG00000014146	-	83	93.333	Notamacropus_eugenii
ENSCPOG00000025463	UPF1	94	90.553	ENSOPRG00000014018	UPF1	99	90.553	Ochotona_princeps
ENSCPOG00000025463	UPF1	100	98.018	ENSODEG00000012426	UPF1	100	98.018	Octodon_degus
ENSCPOG00000025463	UPF1	100	92.716	ENSONIG00000012729	-	100	92.716	Oreochromis_niloticus
ENSCPOG00000025463	UPF1	100	90.265	ENSONIG00000010452	upf1	100	91.459	Oreochromis_niloticus
ENSCPOG00000025463	UPF1	100	95.483	ENSOANG00000004568	UPF1	100	95.483	Ornithorhynchus_anatinus
ENSCPOG00000025463	UPF1	100	92.543	ENSORLG00000008453	upf1	100	92.543	Oryzias_latipes
ENSCPOG00000025463	UPF1	100	92.460	ENSORLG00020014758	upf1	100	92.460	Oryzias_latipes_hni
ENSCPOG00000025463	UPF1	100	92.460	ENSORLG00015010165	upf1	100	92.460	Oryzias_latipes_hsok
ENSCPOG00000025463	UPF1	100	92.453	ENSOMEG00000003665	upf1	100	92.453	Oryzias_melastigma
ENSCPOG00000025463	UPF1	100	95.844	ENSOGAG00000012866	UPF1	100	95.844	Otolemur_garnettii
ENSCPOG00000025463	UPF1	96	95.120	ENSOARG00000010739	UPF1	100	95.120	Ovis_aries
ENSCPOG00000025463	UPF1	96	97.472	ENSPPAG00000043884	UPF1	97	97.472	Pan_paniscus
ENSCPOG00000025463	UPF1	100	96.205	ENSPPRG00000023470	UPF1	100	96.205	Panthera_pardus
ENSCPOG00000025463	UPF1	94	95.802	ENSPTIG00000010159	UPF1	99	95.802	Panthera_tigris_altaica
ENSCPOG00000025463	UPF1	100	97.150	ENSPTRG00000010721	UPF1	100	97.150	Pan_troglodytes
ENSCPOG00000025463	UPF1	100	97.150	ENSPANG00000008847	UPF1	100	97.150	Papio_anubis
ENSCPOG00000025463	UPF1	91	95.177	ENSPKIG00000006069	upf1	97	95.177	Paramormyrops_kingsleyae
ENSCPOG00000025463	UPF1	69	97.647	ENSPSIG00000009491	UPF1	100	97.647	Pelodiscus_sinensis
ENSCPOG00000025463	UPF1	100	89.427	ENSPMGG00000017327	upf1	100	89.714	Periophthalmus_magnuspinnatus
ENSCPOG00000025463	UPF1	100	96.359	ENSPEMG00000001085	Upf1	100	96.359	Peromyscus_maniculatus_bairdii
ENSCPOG00000025463	UPF1	100	87.377	ENSPMAG00000001206	upf1	100	87.377	Petromyzon_marinus
ENSCPOG00000025463	UPF1	100	95.398	ENSPCIG00000006156	UPF1	100	95.398	Phascolarctos_cinereus
ENSCPOG00000025463	UPF1	100	91.996	ENSPLAG00000016232	-	100	92.446	Poecilia_latipinna
ENSCPOG00000025463	UPF1	100	89.750	ENSPLAG00000018155	-	100	89.750	Poecilia_latipinna
ENSCPOG00000025463	UPF1	100	90.126	ENSPMEG00000011443	-	100	90.126	Poecilia_mexicana
ENSCPOG00000025463	UPF1	100	92.086	ENSPMEG00000016319	-	100	92.536	Poecilia_mexicana
ENSCPOG00000025463	UPF1	100	90.205	ENSPREG00000009940	upf1	100	90.205	Poecilia_reticulata
ENSCPOG00000025463	UPF1	100	91.817	ENSPREG00000011247	-	100	92.266	Poecilia_reticulata
ENSCPOG00000025463	UPF1	100	91.512	ENSPPYG00000009752	UPF1	100	91.512	Pongo_abelii
ENSCPOG00000025463	UPF1	76	100.000	ENSPCAG00000012962	UPF1	76	100.000	Procavia_capensis
ENSCPOG00000025463	UPF1	100	96.800	ENSPCOG00000023813	UPF1	100	96.800	Propithecus_coquereli
ENSCPOG00000025463	UPF1	68	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSCPOG00000025463	UPF1	100	92.626	ENSPNYG00000016731	-	100	92.626	Pundamilia_nyererei
ENSCPOG00000025463	UPF1	100	90.000	ENSPNYG00000003694	upf1	100	91.192	Pundamilia_nyererei
ENSCPOG00000025463	UPF1	100	93.261	ENSPNAG00000025614	upf1	100	93.801	Pygocentrus_nattereri
ENSCPOG00000025463	UPF1	100	96.270	ENSRNOG00000020134	Upf1	100	96.270	Rattus_norvegicus
ENSCPOG00000025463	UPF1	94	96.374	ENSRBIG00000013894	UPF1	98	97.727	Rhinopithecus_bieti
ENSCPOG00000025463	UPF1	94	98.760	ENSRROG00000040935	UPF1	97	98.760	Rhinopithecus_roxellana
ENSCPOG00000025463	UPF1	73	57.231	YMR080C	NAM7	82	57.231	Saccharomyces_cerevisiae
ENSCPOG00000025463	UPF1	94	98.760	ENSSBOG00000023632	UPF1	96	98.760	Saimiri_boliviensis_boliviensis
ENSCPOG00000025463	UPF1	94	97.905	ENSSHAG00000010499	UPF1	99	97.905	Sarcophilus_harrisii
ENSCPOG00000025463	UPF1	100	95.234	ENSSFOG00015021095	upf1	100	95.234	Scleropages_formosus
ENSCPOG00000025463	UPF1	100	92.722	ENSSMAG00000021018	-	100	92.812	Scophthalmus_maximus
ENSCPOG00000025463	UPF1	100	89.105	ENSSMAG00000005055	upf1	100	90.248	Scophthalmus_maximus
ENSCPOG00000025463	UPF1	100	90.168	ENSSDUG00000013320	upf1	100	91.143	Seriola_dumerili
ENSCPOG00000025463	UPF1	100	92.902	ENSSDUG00000009629	-	100	92.992	Seriola_dumerili
ENSCPOG00000025463	UPF1	100	92.902	ENSSLDG00000006878	-	100	92.992	Seriola_lalandi_dorsalis
ENSCPOG00000025463	UPF1	100	90.974	ENSSLDG00000020868	upf1	100	91.347	Seriola_lalandi_dorsalis
ENSCPOG00000025463	UPF1	100	95.633	ENSSPUG00000010538	UPF1	100	95.633	Sphenodon_punctatus
ENSCPOG00000025463	UPF1	100	92.806	ENSSPAG00000011521	-	100	92.806	Stegastes_partitus
ENSCPOG00000025463	UPF1	100	89.388	ENSSPAG00000000003	upf1	100	89.596	Stegastes_partitus
ENSCPOG00000025463	UPF1	100	96.460	ENSSSCG00000039301	UPF1	99	97.901	Sus_scrofa
ENSCPOG00000025463	UPF1	83	89.160	ENSTGUG00000001057	UPF1	100	93.796	Taeniopygia_guttata
ENSCPOG00000025463	UPF1	100	91.637	ENSTRUG00000005131	-	100	91.727	Takifugu_rubripes
ENSCPOG00000025463	UPF1	100	90.991	ENSTRUG00000000150	upf1	100	90.991	Takifugu_rubripes
ENSCPOG00000025463	UPF1	100	92.301	ENSTTRG00000011544	UPF1	100	92.389	Tursiops_truncatus
ENSCPOG00000025463	UPF1	100	95.675	ENSUAMG00000007093	UPF1	100	95.675	Ursus_americanus
ENSCPOG00000025463	UPF1	94	98.473	ENSUMAG00000006652	UPF1	99	97.949	Ursus_maritimus
ENSCPOG00000025463	UPF1	100	95.763	ENSVVUG00000007797	UPF1	100	95.763	Vulpes_vulpes
ENSCPOG00000025463	UPF1	100	81.410	ENSXETG00000013602	upf1	100	81.586	Xenopus_tropicalis
ENSCPOG00000025463	UPF1	97	89.944	ENSXCOG00000015275	-	96	89.944	Xiphophorus_couchianus
ENSCPOG00000025463	UPF1	94	93.090	ENSXCOG00000005764	-	100	93.570	Xiphophorus_couchianus
ENSCPOG00000025463	UPF1	100	91.906	ENSXMAG00000002540	-	100	92.356	Xiphophorus_maculatus
ENSCPOG00000025463	UPF1	100	90.189	ENSXMAG00000001703	-	100	90.189	Xiphophorus_maculatus