EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPOG00000031613 (Gene tree)
Gene ID: 100735839
Gene Symbol: PUM1
Alias: KIAA0099|PUMH1
Full Name: pumilio RNA binding family member 1
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Plus strand
Length: 123693 bases
Position: chrDS562880.1:5949122-6072814
Accession: 100735839
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000026421	PUF	PF00806.19	1.5e-70	1	8
ENSCPOP00000026421	PUF	PF00806.19	1.5e-70	2	8
ENSCPOP00000026421	PUF	PF00806.19	1.5e-70	3	8
ENSCPOP00000026421	PUF	PF00806.19	1.5e-70	4	8
ENSCPOP00000026421	PUF	PF00806.19	1.5e-70	5	8
ENSCPOP00000026421	PUF	PF00806.19	1.5e-70	6	8
ENSCPOP00000026421	PUF	PF00806.19	1.5e-70	7	8
ENSCPOP00000026421	PUF	PF00806.19	1.5e-70	8	8
ENSCPOP00000022958	PUF	PF00806.19	1.3e-69	1	8
ENSCPOP00000022958	PUF	PF00806.19	1.3e-69	2	8
ENSCPOP00000022958	PUF	PF00806.19	1.3e-69	3	8
ENSCPOP00000022958	PUF	PF00806.19	1.3e-69	4	8
ENSCPOP00000022958	PUF	PF00806.19	1.3e-69	5	8
ENSCPOP00000022958	PUF	PF00806.19	1.3e-69	6	8
ENSCPOP00000022958	PUF	PF00806.19	1.3e-69	7	8
ENSCPOP00000022958	PUF	PF00806.19	1.3e-69	8	8
ENSCPOP00000023536	PUF	PF00806.19	2.9e-69	1	8
ENSCPOP00000023536	PUF	PF00806.19	2.9e-69	2	8
ENSCPOP00000023536	PUF	PF00806.19	2.9e-69	3	8
ENSCPOP00000023536	PUF	PF00806.19	2.9e-69	4	8
ENSCPOP00000023536	PUF	PF00806.19	2.9e-69	5	8
ENSCPOP00000023536	PUF	PF00806.19	2.9e-69	6	8
ENSCPOP00000023536	PUF	PF00806.19	2.9e-69	7	8
ENSCPOP00000023536	PUF	PF00806.19	2.9e-69	8	8

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000044144	PUM1-203	4674	XM_003471244	ENSCPOP00000026421	944 (aa)	XP_003471292	A0A286XLN0
ENSCPOT00000032225	PUM1-201	5581	XM_003471242	ENSCPOP00000023536	1189 (aa)	XP_003471290	A0A286XDN3
ENSCPOT00000039067	PUM1-202	5118	XM_003471243	ENSCPOP00000022958	1092 (aa)	XP_003471291	A0A286XBY4

Gene Model

Click here to download ENSCPOG00000031613's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000031613's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPOG00000031613	PUM1	86	86.417	ENSCPOG00000031996	PUM2	100	87.923

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000031613	PUM1	100	99.327	ENSG00000134644	PUM1	100	99.327	Homo_sapiens
ENSCPOG00000031613	PUM1	90	91.325	ENSAPOG00000021632	pum1	100	90.843	Acanthochromis_polyacanthus
ENSCPOG00000031613	PUM1	100	99.306	ENSAMEG00000017656	PUM1	97	98.908	Ailuropoda_melanoleuca
ENSCPOG00000031613	PUM1	100	81.064	ENSACIG00000021013	pum1	100	76.261	Amphilophus_citrinellus
ENSCPOG00000031613	PUM1	90	91.325	ENSAOCG00000003944	pum1	100	90.843	Amphiprion_ocellaris
ENSCPOG00000031613	PUM1	90	91.325	ENSAPEG00000014550	pum1	100	90.843	Amphiprion_percula
ENSCPOG00000031613	PUM1	100	81.064	ENSATEG00000016004	pum1	100	90.843	Anabas_testudineus
ENSCPOG00000031613	PUM1	100	97.761	ENSAPLG00000009351	PUM1	100	97.561	Anas_platyrhynchos
ENSCPOG00000031613	PUM1	100	95.890	ENSACAG00000000682	PUM1	98	95.290	Anolis_carolinensis
ENSCPOG00000031613	PUM1	100	99.306	ENSANAG00000027865	PUM1	100	99.306	Aotus_nancymaae
ENSCPOG00000031613	PUM1	90	76.481	ENSACLG00000019354	pum1	100	78.743	Astatotilapia_calliptera
ENSCPOG00000031613	PUM1	100	84.367	ENSAMXG00000020607	pum1	96	78.947	Astyanax_mexicanus
ENSCPOG00000031613	PUM1	100	99.306	ENSBTAG00000018979	PUM1	100	99.306	Bos_taurus
ENSCPOG00000031613	PUM1	100	99.306	ENSCJAG00000006035	PUM1	100	99.306	Callithrix_jacchus
ENSCPOG00000031613	PUM1	100	99.306	ENSCAFG00000011205	PUM1	100	96.720	Canis_familiaris
ENSCPOG00000031613	PUM1	92	96.906	ENSCAFG00020024616	PUM1	99	98.292	Canis_lupus_dingo
ENSCPOG00000031613	PUM1	100	99.306	ENSCHIG00000012952	PUM1	100	98.823	Capra_hircus
ENSCPOG00000031613	PUM1	100	98.991	ENSTSYG00000008868	PUM1	100	98.991	Carlito_syrichta
ENSCPOG00000031613	PUM1	100	99.306	ENSCATG00000017991	PUM1	100	99.517	Cercocebus_atys
ENSCPOG00000031613	PUM1	100	100.000	ENSCLAG00000007662	PUM1	100	100.000	Chinchilla_lanigera
ENSCPOG00000031613	PUM1	100	99.306	ENSCSAG00000001028	PUM1	100	98.417	Chlorocebus_sabaeus
ENSCPOG00000031613	PUM1	92	99.306	ENSCHOG00000010245	PUM1	93	96.121	Choloepus_hoffmanni
ENSCPOG00000031613	PUM1	100	97.564	ENSCPBG00000009288	PUM1	100	97.585	Chrysemys_picta_bellii
ENSCPOG00000031613	PUM1	100	99.306	ENSCANG00000042606	PUM1	100	99.306	Colobus_angolensis_palliatus
ENSCPOG00000031613	PUM1	100	98.810	ENSCGRG00001024949	Pum1	100	98.810	Cricetulus_griseus_chok1gshd
ENSCPOG00000031613	PUM1	100	98.810	ENSCGRG00000014197	Pum1	100	98.810	Cricetulus_griseus_crigri
ENSCPOG00000031613	PUM1	90	75.926	ENSCSEG00000015981	pum1	100	77.613	Cynoglossus_semilaevis
ENSCPOG00000031613	PUM1	100	80.569	ENSCVAG00000007043	pum1	100	75.475	Cyprinodon_variegatus
ENSCPOG00000031613	PUM1	100	84.491	ENSDARG00000099256	pum1	100	79.198	Danio_rerio
ENSCPOG00000031613	PUM1	100	99.306	ENSDNOG00000010939	PUM1	100	98.738	Dasypus_novemcinctus
ENSCPOG00000031613	PUM1	85	99.517	ENSDORG00000001875	Pum1	100	99.517	Dipodomys_ordii
ENSCPOG00000031613	PUM1	85	100.000	ENSETEG00000004355	PUM1	87	93.366	Echinops_telfairi
ENSCPOG00000031613	PUM1	100	99.306	ENSEASG00005010813	PUM1	100	98.654	Equus_asinus_asinus
ENSCPOG00000031613	PUM1	100	98.654	ENSECAG00000021369	PUM1	100	98.654	Equus_caballus
ENSCPOG00000031613	PUM1	80	99.383	ENSEEUG00000003871	PUM1	74	99.322	Erinaceus_europaeus
ENSCPOG00000031613	PUM1	100	83.109	ENSELUG00000002409	pum1	100	83.292	Esox_lucius
ENSCPOG00000031613	PUM1	100	99.306	ENSFCAG00000010374	PUM1	100	99.583	Felis_catus
ENSCPOG00000031613	PUM1	100	96.168	ENSFALG00000001214	PUM1	97	94.724	Ficedula_albicollis
ENSCPOG00000031613	PUM1	100	100.000	ENSFDAG00000011319	PUM1	100	100.000	Fukomys_damarensis
ENSCPOG00000031613	PUM1	70	88.213	ENSGMOG00000010491	pum1	100	74.587	Gadus_morhua
ENSCPOG00000031613	PUM1	100	97.886	ENSGALG00000042598	PUM1	100	97.729	Gallus_gallus
ENSCPOG00000031613	PUM1	100	80.693	ENSGAFG00000015617	pum1	100	90.120	Gambusia_affinis
ENSCPOG00000031613	PUM1	100	80.788	ENSGACG00000005717	pum1	100	76.112	Gasterosteus_aculeatus
ENSCPOG00000031613	PUM1	100	97.388	ENSGAGG00000001290	PUM1	100	97.140	Gopherus_agassizii
ENSCPOG00000031613	PUM1	100	99.306	ENSGGOG00000011983	PUM1	100	99.306	Gorilla_gorilla
ENSCPOG00000031613	PUM1	100	80.817	ENSHBUG00000018718	pum1	100	76.053	Haplochromis_burtoni
ENSCPOG00000031613	PUM1	100	99.327	ENSHGLG00000013819	Pum1	100	99.327	Heterocephalus_glaber_female
ENSCPOG00000031613	PUM1	100	99.327	ENSHGLG00100008621	Pum1	100	99.327	Heterocephalus_glaber_male
ENSCPOG00000031613	PUM1	90	74.838	ENSHCOG00000005149	pum1	100	74.954	Hippocampus_comes
ENSCPOG00000031613	PUM1	100	82.512	ENSIPUG00000020421	pum1	100	77.741	Ictalurus_punctatus
ENSCPOG00000031613	PUM1	100	99.364	ENSSTOG00000010757	PUM1	100	99.364	Ictidomys_tridecemlineatus
ENSCPOG00000031613	PUM1	100	99.306	ENSJJAG00000000530	Pum1	100	99.306	Jaculus_jaculus
ENSCPOG00000031613	PUM1	100	80.198	ENSKMAG00000003481	pum1	100	75.640	Kryptolebias_marmoratus
ENSCPOG00000031613	PUM1	100	80.173	ENSLBEG00000002527	pum1	100	75.600	Labrus_bergylta
ENSCPOG00000031613	PUM1	100	88.352	ENSLACG00000017188	PUM1	99	86.511	Latimeria_chalumnae
ENSCPOG00000031613	PUM1	100	91.304	ENSLOCG00000005210	pum1	99	87.980	Lepisosteus_oculatus
ENSCPOG00000031613	PUM1	100	98.486	ENSLAFG00000003178	PUM1	100	98.486	Loxodonta_africana
ENSCPOG00000031613	PUM1	100	99.306	ENSMFAG00000010291	PUM1	100	99.517	Macaca_fascicularis
ENSCPOG00000031613	PUM1	100	99.306	ENSMMUG00000013520	PUM1	100	99.306	Macaca_mulatta
ENSCPOG00000031613	PUM1	100	99.306	ENSMNEG00000034639	PUM1	100	99.306	Macaca_nemestrina
ENSCPOG00000031613	PUM1	100	99.306	ENSMLEG00000038743	PUM1	100	99.306	Mandrillus_leucophaeus
ENSCPOG00000031613	PUM1	100	80.817	ENSMAMG00000011606	pum1	100	76.135	Mastacembelus_armatus
ENSCPOG00000031613	PUM1	100	80.817	ENSMZEG00005005834	pum1	100	76.053	Maylandia_zebra
ENSCPOG00000031613	PUM1	100	97.512	ENSMGAG00000000724	PUM1	100	97.477	Meleagris_gallopavo
ENSCPOG00000031613	PUM1	100	98.907	ENSMAUG00000022090	Pum1	100	98.907	Mesocricetus_auratus
ENSCPOG00000031613	PUM1	100	98.991	ENSMICG00000007713	-	100	98.991	Microcebus_murinus
ENSCPOG00000031613	PUM1	99	97.183	ENSMICG00000012213	-	99	96.799	Microcebus_murinus
ENSCPOG00000031613	PUM1	100	98.823	ENSMOCG00000015463	Pum1	100	98.823	Microtus_ochrogaster
ENSCPOG00000031613	PUM1	90	88.046	ENSMMOG00000019817	pum1	100	90.602	Mola_mola
ENSCPOG00000031613	PUM1	100	97.484	ENSMODG00000017067	PUM1	100	97.481	Monodelphis_domestica
ENSCPOG00000031613	PUM1	90	88.276	ENSMALG00000016399	pum1	100	90.843	Monopterus_albus
ENSCPOG00000031613	PUM1	100	98.738	MGP_CAROLIEiJ_G0026549	Pum1	100	98.738	Mus_caroli
ENSCPOG00000031613	PUM1	100	98.991	ENSMUSG00000028580	Pum1	100	98.991	Mus_musculus
ENSCPOG00000031613	PUM1	100	98.835	MGP_PahariEiJ_G0028881	Pum1	100	98.835	Mus_pahari
ENSCPOG00000031613	PUM1	100	98.907	MGP_SPRETEiJ_G0027529	Pum1	100	98.907	Mus_spretus
ENSCPOG00000031613	PUM1	100	99.306	ENSMPUG00000015454	PUM1	100	98.570	Mustela_putorius_furo
ENSCPOG00000031613	PUM1	100	99.306	ENSMLUG00000006490	PUM1	100	98.738	Myotis_lucifugus
ENSCPOG00000031613	PUM1	100	99.258	ENSNGAG00000002378	Pum1	100	99.258	Nannospalax_galili
ENSCPOG00000031613	PUM1	100	78.138	ENSNBRG00000010689	pum1	100	83.210	Neolamprologus_brichardi
ENSCPOG00000031613	PUM1	100	98.611	ENSNLEG00000001151	PUM1	100	98.611	Nomascus_leucogenys
ENSCPOG00000031613	PUM1	84	96.284	ENSMEUG00000000976	-	82	96.284	Notamacropus_eugenii
ENSCPOG00000031613	PUM1	84	100.000	ENSOPRG00000001776	PUM1	73	100.000	Ochotona_princeps
ENSCPOG00000031613	PUM1	100	99.576	ENSODEG00000003465	PUM1	100	99.576	Octodon_degus
ENSCPOG00000031613	PUM1	100	81.373	ENSONIG00000002290	pum1	100	76.383	Oreochromis_niloticus
ENSCPOG00000031613	PUM1	81	77.766	ENSOANG00000004902	-	100	77.766	Ornithorhynchus_anatinus
ENSCPOG00000031613	PUM1	100	99.306	ENSOCUG00000008641	PUM1	99	98.654	Oryctolagus_cuniculus
ENSCPOG00000031613	PUM1	100	81.683	ENSORLG00000011482	pum1	100	75.802	Oryzias_latipes
ENSCPOG00000031613	PUM1	100	81.807	ENSORLG00020019461	pum1	100	75.802	Oryzias_latipes_hni
ENSCPOG00000031613	PUM1	100	81.807	ENSORLG00015011375	pum1	100	75.885	Oryzias_latipes_hsok
ENSCPOG00000031613	PUM1	90	92.530	ENSOMEG00000009312	pum1	100	90.120	Oryzias_melastigma
ENSCPOG00000031613	PUM1	100	98.611	ENSOGAG00000011063	PUM1	100	96.306	Otolemur_garnettii
ENSCPOG00000031613	PUM1	100	99.306	ENSOARG00000001899	PUM1	100	98.792	Ovis_aries
ENSCPOG00000031613	PUM1	100	99.306	ENSPPAG00000044003	PUM1	100	99.306	Pan_paniscus
ENSCPOG00000031613	PUM1	100	99.306	ENSPPRG00000001370	PUM1	100	99.306	Panthera_pardus
ENSCPOG00000031613	PUM1	100	99.306	ENSPTIG00000010798	PUM1	100	99.306	Panthera_tigris_altaica
ENSCPOG00000031613	PUM1	100	99.306	ENSPTRG00000000453	PUM1	100	99.306	Pan_troglodytes
ENSCPOG00000031613	PUM1	100	99.306	ENSPANG00000016338	PUM1	100	99.517	Papio_anubis
ENSCPOG00000031613	PUM1	100	82.619	ENSPKIG00000010578	pum1	100	78.153	Paramormyrops_kingsleyae
ENSCPOG00000031613	PUM1	100	97.756	ENSPSIG00000014118	PUM1	100	97.477	Pelodiscus_sinensis
ENSCPOG00000031613	PUM1	100	76.507	ENSPMGG00000005836	pum1	100	81.663	Periophthalmus_magnuspinnatus
ENSCPOG00000031613	PUM1	100	98.991	ENSPEMG00000010009	Pum1	100	98.991	Peromyscus_maniculatus_bairdii
ENSCPOG00000031613	PUM1	100	97.694	ENSPCIG00000014151	PUM1	100	97.886	Phascolarctos_cinereus
ENSCPOG00000031613	PUM1	93	83.498	ENSPFOG00000007289	pum1	99	82.110	Poecilia_formosa
ENSCPOG00000031613	PUM1	100	82.593	ENSPLAG00000007256	pum1	100	77.950	Poecilia_latipinna
ENSCPOG00000031613	PUM1	85	82.716	ENSPMEG00000019543	pum1	99	78.125	Poecilia_mexicana
ENSCPOG00000031613	PUM1	100	80.693	ENSPREG00000005195	pum1	100	80.630	Poecilia_reticulata
ENSCPOG00000031613	PUM1	100	99.306	ENSPPYG00000001621	PUM1	100	97.279	Pongo_abelii
ENSCPOG00000031613	PUM1	84	98.765	ENSPCAG00000001979	PUM1	74	98.765	Procavia_capensis
ENSCPOG00000031613	PUM1	100	98.991	ENSPCOG00000004398	PUM1	100	98.991	Propithecus_coquereli
ENSCPOG00000031613	PUM1	100	99.306	ENSPVAG00000005207	PUM1	97	96.888	Pteropus_vampyrus
ENSCPOG00000031613	PUM1	100	80.817	ENSPNYG00000009518	pum1	100	81.446	Pundamilia_nyererei
ENSCPOG00000031613	PUM1	100	84.615	ENSPNAG00000026728	pum1	100	80.396	Pygocentrus_nattereri
ENSCPOG00000031613	PUM1	100	99.001	ENSRNOG00000011709	Pum1	100	98.738	Rattus_norvegicus
ENSCPOG00000031613	PUM1	100	99.306	ENSRBIG00000042521	PUM1	100	99.517	Rhinopithecus_bieti
ENSCPOG00000031613	PUM1	100	99.306	ENSRROG00000020156	PUM1	100	99.306	Rhinopithecus_roxellana
ENSCPOG00000031613	PUM1	100	99.306	ENSSBOG00000032037	PUM1	100	99.306	Saimiri_boliviensis_boliviensis
ENSCPOG00000031613	PUM1	100	97.484	ENSSHAG00000010918	PUM1	100	97.397	Sarcophilus_harrisii
ENSCPOG00000031613	PUM1	100	80.817	ENSSMAG00000010918	pum1	100	90.843	Scophthalmus_maximus
ENSCPOG00000031613	PUM1	100	80.941	ENSSDUG00000009021	pum1	100	76.383	Seriola_dumerili
ENSCPOG00000031613	PUM1	100	80.941	ENSSLDG00000009667	pum1	100	78.468	Seriola_lalandi_dorsalis
ENSCPOG00000031613	PUM1	99	99.306	ENSSARG00000003055	PUM1	91	99.558	Sorex_araneus
ENSCPOG00000031613	PUM1	100	97.758	ENSSPUG00000006267	PUM1	100	96.888	Sphenodon_punctatus
ENSCPOG00000031613	PUM1	100	81.064	ENSSPAG00000016636	pum1	100	90.843	Stegastes_partitus
ENSCPOG00000031613	PUM1	100	99.306	ENSSSCG00000003591	PUM1	100	99.583	Sus_scrofa
ENSCPOG00000031613	PUM1	100	80.817	ENSTRUG00000013121	pum1	100	82.840	Takifugu_rubripes
ENSCPOG00000031613	PUM1	100	80.593	ENSTNIG00000016983	pum1	99	76.368	Tetraodon_nigroviridis
ENSCPOG00000031613	PUM1	87	96.341	ENSTBEG00000013810	PUM1	89	96.341	Tupaia_belangeri
ENSCPOG00000031613	PUM1	92	98.906	ENSTTRG00000007436	PUM1	90	98.906	Tursiops_truncatus
ENSCPOG00000031613	PUM1	99	98.433	ENSUAMG00000018262	-	100	98.433	Ursus_americanus
ENSCPOG00000031613	PUM1	95	99.275	ENSUMAG00000009211	PUM1	100	99.275	Ursus_maritimus
ENSCPOG00000031613	PUM1	100	98.755	ENSVPAG00000005902	PUM1	92	99.005	Vicugna_pacos
ENSCPOG00000031613	PUM1	100	99.306	ENSVVUG00000014631	PUM1	100	99.275	Vulpes_vulpes
ENSCPOG00000031613	PUM1	100	88.323	ENSXETG00000012904	pum1	99	86.398	Xenopus_tropicalis
ENSCPOG00000031613	PUM1	100	80.693	ENSXMAG00000002945	pum1	100	77.743	Xiphophorus_maculatus