EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCPOG00000031666 (Gene tree)
Gene ID: 100732041
Gene Symbol: SMNDC1
Alias: SMNR|SPF30|TDRD16C
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Plus strand
Length: 14864 bases
Position: chrDS562866.1:5135398-5150261
Accession: 100732041
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000023304	SMN	PF06003.12	2.9e-16	1	1
ENSCPOP00000026081	SMN	PF06003.12	2.9e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000033213	SMNDC1-202	4711	XM_013158410	ENSCPOP00000023304	238 (aa)	XP_013013864	A0A286XKZ1
ENSCPOT00000033937	SMNDC1-201	3755	XM_003475186	ENSCPOP00000026081	238 (aa)	XP_003475234	A0A286XKZ1

Gene Model

Click here to download ENSCPOG00000031666's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000031666's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000031666	SMNDC1	100	98.739	ENSG00000119953	SMNDC1	100	98.739	Homo_sapiens
ENSCPOG00000031666	SMNDC1	100	76.151	ENSAPOG00000021772	smndc1	100	76.151	Acanthochromis_polyacanthus
ENSCPOG00000031666	SMNDC1	100	99.160	ENSAMEG00000005251	SMNDC1	100	99.160	Ailuropoda_melanoleuca
ENSCPOG00000031666	SMNDC1	100	76.987	ENSACIG00000004819	smndc1	100	76.987	Amphilophus_citrinellus
ENSCPOG00000031666	SMNDC1	100	76.151	ENSAOCG00000017869	smndc1	100	76.151	Amphiprion_ocellaris
ENSCPOG00000031666	SMNDC1	100	76.151	ENSAPEG00000007752	smndc1	100	76.151	Amphiprion_percula
ENSCPOG00000031666	SMNDC1	100	76.050	ENSATEG00000006830	smndc1	100	76.050	Anabas_testudineus
ENSCPOG00000031666	SMNDC1	83	95.455	ENSAPLG00000004322	SMNDC1	100	95.455	Anas_platyrhynchos
ENSCPOG00000031666	SMNDC1	100	94.958	ENSACAG00000005983	SMNDC1	100	94.958	Anolis_carolinensis
ENSCPOG00000031666	SMNDC1	100	99.160	ENSANAG00000032875	SMNDC1	100	99.160	Aotus_nancymaae
ENSCPOG00000031666	SMNDC1	100	76.050	ENSACLG00000016360	smndc1	100	76.050	Astatotilapia_calliptera
ENSCPOG00000031666	SMNDC1	100	76.050	ENSAMXG00000020310	smndc1	100	76.050	Astyanax_mexicanus
ENSCPOG00000031666	SMNDC1	100	98.739	ENSBTAG00000000551	SMNDC1	100	98.739	Bos_taurus
ENSCPOG00000031666	SMNDC1	100	99.160	ENSCJAG00000018624	SMNDC1	100	99.160	Callithrix_jacchus
ENSCPOG00000031666	SMNDC1	100	99.160	ENSCAFG00000010720	SMNDC1	100	99.160	Canis_familiaris
ENSCPOG00000031666	SMNDC1	100	99.160	ENSCAFG00020011913	SMNDC1	100	99.160	Canis_lupus_dingo
ENSCPOG00000031666	SMNDC1	100	98.739	ENSCHIG00000010604	SMNDC1	100	98.739	Capra_hircus
ENSCPOG00000031666	SMNDC1	100	98.739	ENSTSYG00000026454	SMNDC1	100	98.739	Carlito_syrichta
ENSCPOG00000031666	SMNDC1	100	85.000	ENSCAPG00000009132	SMNDC1	100	100.000	Cavia_aperea
ENSCPOG00000031666	SMNDC1	100	99.160	ENSCCAG00000021793	SMNDC1	100	99.160	Cebus_capucinus
ENSCPOG00000031666	SMNDC1	100	98.739	ENSCATG00000035910	SMNDC1	100	98.739	Cercocebus_atys
ENSCPOG00000031666	SMNDC1	100	99.580	ENSCLAG00000002838	SMNDC1	100	99.580	Chinchilla_lanigera
ENSCPOG00000031666	SMNDC1	100	99.160	ENSCSAG00000005169	SMNDC1	100	99.160	Chlorocebus_sabaeus
ENSCPOG00000031666	SMNDC1	81	98.446	ENSCHOG00000002936	SMNDC1	100	98.446	Choloepus_hoffmanni
ENSCPOG00000031666	SMNDC1	100	97.059	ENSCPBG00000012837	SMNDC1	100	97.059	Chrysemys_picta_bellii
ENSCPOG00000031666	SMNDC1	100	78.151	ENSCANG00000036994	-	100	78.151	Colobus_angolensis_palliatus
ENSCPOG00000031666	SMNDC1	100	99.160	ENSCANG00000031720	-	100	99.160	Colobus_angolensis_palliatus
ENSCPOG00000031666	SMNDC1	100	91.176	ENSCANG00000034620	-	100	91.176	Colobus_angolensis_palliatus
ENSCPOG00000031666	SMNDC1	100	98.319	ENSCGRG00001012973	Smndc1	100	98.319	Cricetulus_griseus_chok1gshd
ENSCPOG00000031666	SMNDC1	100	98.319	ENSCGRG00000012396	Smndc1	100	98.319	Cricetulus_griseus_crigri
ENSCPOG00000031666	SMNDC1	100	75.630	ENSCSEG00000015621	smndc1	100	75.630	Cynoglossus_semilaevis
ENSCPOG00000031666	SMNDC1	100	76.471	ENSCVAG00000020432	smndc1	100	76.471	Cyprinodon_variegatus
ENSCPOG00000031666	SMNDC1	100	79.412	ENSDARG00000056235	smndc1	100	79.412	Danio_rerio
ENSCPOG00000031666	SMNDC1	100	99.160	ENSDNOG00000016387	SMNDC1	83	99.160	Dasypus_novemcinctus
ENSCPOG00000031666	SMNDC1	100	99.160	ENSDORG00000023715	Smndc1	100	99.160	Dipodomys_ordii
ENSCPOG00000031666	SMNDC1	95	41.767	FBgn0039977	CG17454	98	42.972	Drosophila_melanogaster
ENSCPOG00000031666	SMNDC1	100	71.369	ENSEBUG00000010929	smndc1	100	71.369	Eptatretus_burgeri
ENSCPOG00000031666	SMNDC1	100	99.160	ENSEASG00005014930	SMNDC1	100	99.160	Equus_asinus_asinus
ENSCPOG00000031666	SMNDC1	100	99.160	ENSECAG00000029973	SMNDC1	100	99.160	Equus_caballus
ENSCPOG00000031666	SMNDC1	83	69.697	ENSEEUG00000013407	-	100	69.697	Erinaceus_europaeus
ENSCPOG00000031666	SMNDC1	100	77.311	ENSELUG00000000227	smndc1	100	77.311	Esox_lucius
ENSCPOG00000031666	SMNDC1	100	99.160	ENSFCAG00000027353	SMNDC1	100	99.160	Felis_catus
ENSCPOG00000031666	SMNDC1	100	95.378	ENSFALG00000002306	SMNDC1	100	95.378	Ficedula_albicollis
ENSCPOG00000031666	SMNDC1	100	99.580	ENSFDAG00000006468	SMNDC1	100	99.580	Fukomys_damarensis
ENSCPOG00000031666	SMNDC1	100	76.050	ENSFHEG00000020150	smndc1	100	76.050	Fundulus_heteroclitus
ENSCPOG00000031666	SMNDC1	100	76.471	ENSGMOG00000016585	smndc1	100	76.471	Gadus_morhua
ENSCPOG00000031666	SMNDC1	100	95.378	ENSGALG00000008561	SMNDC1	100	95.378	Gallus_gallus
ENSCPOG00000031666	SMNDC1	100	75.210	ENSGAFG00000011582	smndc1	100	75.210	Gambusia_affinis
ENSCPOG00000031666	SMNDC1	100	75.630	ENSGACG00000009468	smndc1	100	75.630	Gasterosteus_aculeatus
ENSCPOG00000031666	SMNDC1	100	97.059	ENSGAGG00000024547	SMNDC1	100	97.059	Gopherus_agassizii
ENSCPOG00000031666	SMNDC1	100	99.160	ENSGGOG00000010071	SMNDC1	100	99.160	Gorilla_gorilla
ENSCPOG00000031666	SMNDC1	100	76.050	ENSHBUG00000017596	smndc1	100	76.050	Haplochromis_burtoni
ENSCPOG00000031666	SMNDC1	100	99.580	ENSHGLG00000013390	-	100	99.580	Heterocephalus_glaber_female
ENSCPOG00000031666	SMNDC1	100	68.443	ENSHGLG00000001157	-	100	64.898	Heterocephalus_glaber_female
ENSCPOG00000031666	SMNDC1	100	99.580	ENSHGLG00100004814	-	100	99.580	Heterocephalus_glaber_male
ENSCPOG00000031666	SMNDC1	100	77.459	ENSHGLG00100004278	-	100	77.049	Heterocephalus_glaber_male
ENSCPOG00000031666	SMNDC1	100	75.314	ENSHCOG00000000783	smndc1	100	75.314	Hippocampus_comes
ENSCPOG00000031666	SMNDC1	100	77.311	ENSIPUG00000004217	smndc1	100	77.311	Ictalurus_punctatus
ENSCPOG00000031666	SMNDC1	100	98.739	ENSSTOG00000006088	SMNDC1	100	98.739	Ictidomys_tridecemlineatus
ENSCPOG00000031666	SMNDC1	100	99.160	ENSJJAG00000019974	Smndc1	100	99.160	Jaculus_jaculus
ENSCPOG00000031666	SMNDC1	100	75.210	ENSKMAG00000020134	smndc1	100	75.210	Kryptolebias_marmoratus
ENSCPOG00000031666	SMNDC1	100	74.790	ENSLBEG00000004598	smndc1	100	74.790	Labrus_bergylta
ENSCPOG00000031666	SMNDC1	100	83.613	ENSLACG00000007784	SMNDC1	100	83.613	Latimeria_chalumnae
ENSCPOG00000031666	SMNDC1	100	84.454	ENSLOCG00000012355	smndc1	100	84.454	Lepisosteus_oculatus
ENSCPOG00000031666	SMNDC1	100	98.739	ENSLAFG00000014353	SMNDC1	100	98.739	Loxodonta_africana
ENSCPOG00000031666	SMNDC1	100	99.160	ENSMFAG00000002433	-	100	99.160	Macaca_fascicularis
ENSCPOG00000031666	SMNDC1	100	81.513	ENSMFAG00000038381	-	100	81.513	Macaca_fascicularis
ENSCPOG00000031666	SMNDC1	100	99.160	ENSMMUG00000007775	SMNDC1	100	99.160	Macaca_mulatta
ENSCPOG00000031666	SMNDC1	100	81.513	ENSMMUG00000045875	-	100	81.513	Macaca_mulatta
ENSCPOG00000031666	SMNDC1	100	87.395	ENSMNEG00000033853	-	100	87.395	Macaca_nemestrina
ENSCPOG00000031666	SMNDC1	100	99.160	ENSMNEG00000042963	-	100	99.160	Macaca_nemestrina
ENSCPOG00000031666	SMNDC1	100	92.887	ENSMLEG00000040236	SMNDC1	100	92.469	Mandrillus_leucophaeus
ENSCPOG00000031666	SMNDC1	89	73.239	ENSMAMG00000018233	smndc1	87	73.239	Mastacembelus_armatus
ENSCPOG00000031666	SMNDC1	100	76.050	ENSMZEG00005027510	smndc1	100	76.050	Maylandia_zebra
ENSCPOG00000031666	SMNDC1	84	95.000	ENSMGAG00000010777	SMNDC1	84	95.000	Meleagris_gallopavo
ENSCPOG00000031666	SMNDC1	99	80.591	ENSMAUG00000005459	-	93	80.591	Mesocricetus_auratus
ENSCPOG00000031666	SMNDC1	100	99.160	ENSMAUG00000012243	-	100	99.160	Mesocricetus_auratus
ENSCPOG00000031666	SMNDC1	100	99.160	ENSMICG00000027336	-	100	99.160	Microcebus_murinus
ENSCPOG00000031666	SMNDC1	100	86.134	ENSMICG00000031640	-	100	86.134	Microcebus_murinus
ENSCPOG00000031666	SMNDC1	100	98.739	ENSMOCG00000002458	Smndc1	100	98.739	Microtus_ochrogaster
ENSCPOG00000031666	SMNDC1	100	76.050	ENSMMOG00000008856	smndc1	100	76.050	Mola_mola
ENSCPOG00000031666	SMNDC1	100	98.319	ENSMODG00000010542	SMNDC1	100	98.319	Monodelphis_domestica
ENSCPOG00000031666	SMNDC1	100	76.471	ENSMALG00000017598	smndc1	100	76.471	Monopterus_albus
ENSCPOG00000031666	SMNDC1	100	98.739	MGP_CAROLIEiJ_G0023072	Smndc1	100	98.739	Mus_caroli
ENSCPOG00000031666	SMNDC1	100	98.319	ENSMUSG00000025024	Smndc1	100	98.319	Mus_musculus
ENSCPOG00000031666	SMNDC1	100	97.899	MGP_PahariEiJ_G0014560	Smndc1	100	97.899	Mus_pahari
ENSCPOG00000031666	SMNDC1	100	98.319	MGP_SPRETEiJ_G0023993	Smndc1	100	98.319	Mus_spretus
ENSCPOG00000031666	SMNDC1	100	99.160	ENSMPUG00000002089	SMNDC1	100	99.160	Mustela_putorius_furo
ENSCPOG00000031666	SMNDC1	100	98.739	ENSMLUG00000016007	SMNDC1	100	98.739	Myotis_lucifugus
ENSCPOG00000031666	SMNDC1	100	98.319	ENSNGAG00000006833	Smndc1	100	98.319	Nannospalax_galili
ENSCPOG00000031666	SMNDC1	100	75.630	ENSNBRG00000017089	smndc1	100	75.630	Neolamprologus_brichardi
ENSCPOG00000031666	SMNDC1	100	99.160	ENSNLEG00000015471	SMNDC1	100	99.160	Nomascus_leucogenys
ENSCPOG00000031666	SMNDC1	82	58.000	ENSMEUG00000010120	-	99	58.500	Notamacropus_eugenii
ENSCPOG00000031666	SMNDC1	100	100.000	ENSOPRG00000015348	SMNDC1	100	100.000	Ochotona_princeps
ENSCPOG00000031666	SMNDC1	100	68.908	ENSODEG00000007594	-	100	65.966	Octodon_degus
ENSCPOG00000031666	SMNDC1	100	75.630	ENSONIG00000000434	smndc1	100	75.630	Oreochromis_niloticus
ENSCPOG00000031666	SMNDC1	100	97.899	ENSOANG00000001598	SMNDC1	100	97.899	Ornithorhynchus_anatinus
ENSCPOG00000031666	SMNDC1	100	99.160	ENSOCUG00000008145	-	100	99.160	Oryctolagus_cuniculus
ENSCPOG00000031666	SMNDC1	100	75.210	ENSOCUG00000012274	-	100	76.891	Oryctolagus_cuniculus
ENSCPOG00000031666	SMNDC1	100	76.050	ENSORLG00000005934	smndc1	95	76.050	Oryzias_latipes
ENSCPOG00000031666	SMNDC1	100	76.050	ENSORLG00020008796	smndc1	95	76.050	Oryzias_latipes_hni
ENSCPOG00000031666	SMNDC1	100	76.050	ENSORLG00015013666	smndc1	100	76.050	Oryzias_latipes_hsok
ENSCPOG00000031666	SMNDC1	100	77.731	ENSOMEG00000007590	smndc1	100	77.731	Oryzias_melastigma
ENSCPOG00000031666	SMNDC1	100	98.739	ENSOGAG00000000571	SMNDC1	100	98.739	Otolemur_garnettii
ENSCPOG00000031666	SMNDC1	100	98.739	ENSOARG00000009500	SMNDC1	100	98.739	Ovis_aries
ENSCPOG00000031666	SMNDC1	100	99.160	ENSPPAG00000027815	SMNDC1	100	99.160	Pan_paniscus
ENSCPOG00000031666	SMNDC1	100	99.160	ENSPPRG00000013749	SMNDC1	100	99.160	Panthera_pardus
ENSCPOG00000031666	SMNDC1	100	99.160	ENSPTIG00000011451	SMNDC1	100	99.160	Panthera_tigris_altaica
ENSCPOG00000031666	SMNDC1	100	99.160	ENSPTRG00000002937	SMNDC1	100	99.160	Pan_troglodytes
ENSCPOG00000031666	SMNDC1	100	93.277	ENSPANG00000031346	-	100	93.277	Papio_anubis
ENSCPOG00000031666	SMNDC1	100	99.160	ENSPANG00000020805	-	100	99.160	Papio_anubis
ENSCPOG00000031666	SMNDC1	100	81.092	ENSPKIG00000017164	smndc1	100	81.092	Paramormyrops_kingsleyae
ENSCPOG00000031666	SMNDC1	100	96.639	ENSPSIG00000012257	SMNDC1	100	96.639	Pelodiscus_sinensis
ENSCPOG00000031666	SMNDC1	100	73.529	ENSPMGG00000015651	smndc1	100	73.529	Periophthalmus_magnuspinnatus
ENSCPOG00000031666	SMNDC1	100	99.160	ENSPEMG00000022058	Smndc1	100	99.160	Peromyscus_maniculatus_bairdii
ENSCPOG00000031666	SMNDC1	100	67.623	ENSPMAG00000007705	smndc1	100	67.623	Petromyzon_marinus
ENSCPOG00000031666	SMNDC1	97	63.478	ENSPCIG00000009693	-	100	63.478	Phascolarctos_cinereus
ENSCPOG00000031666	SMNDC1	100	98.319	ENSPCIG00000018419	SMNDC1	100	98.319	Phascolarctos_cinereus
ENSCPOG00000031666	SMNDC1	100	75.630	ENSPFOG00000017113	smndc1	100	75.630	Poecilia_formosa
ENSCPOG00000031666	SMNDC1	100	76.050	ENSPLAG00000010372	smndc1	100	76.050	Poecilia_latipinna
ENSCPOG00000031666	SMNDC1	100	76.050	ENSPMEG00000012288	smndc1	100	76.050	Poecilia_mexicana
ENSCPOG00000031666	SMNDC1	100	75.210	ENSPREG00000012279	smndc1	100	75.210	Poecilia_reticulata
ENSCPOG00000031666	SMNDC1	100	99.160	ENSPPYG00000002643	SMNDC1	100	99.160	Pongo_abelii
ENSCPOG00000031666	SMNDC1	81	97.409	ENSPCAG00000016183	SMNDC1	100	97.409	Procavia_capensis
ENSCPOG00000031666	SMNDC1	100	98.739	ENSPCOG00000024343	SMNDC1	100	98.739	Propithecus_coquereli
ENSCPOG00000031666	SMNDC1	100	76.471	ENSPVAG00000004368	SMNDC1	100	76.471	Pteropus_vampyrus
ENSCPOG00000031666	SMNDC1	92	69.778	ENSPNYG00000024093	smndc1	86	75.758	Pundamilia_nyererei
ENSCPOG00000031666	SMNDC1	100	76.050	ENSPNAG00000025285	smndc1	100	76.050	Pygocentrus_nattereri
ENSCPOG00000031666	SMNDC1	100	98.739	ENSRNOG00000014833	Smndc1	100	98.739	Rattus_norvegicus
ENSCPOG00000031666	SMNDC1	100	82.773	ENSRBIG00000032452	-	100	82.773	Rhinopithecus_bieti
ENSCPOG00000031666	SMNDC1	100	98.739	ENSRBIG00000000224	-	100	98.739	Rhinopithecus_bieti
ENSCPOG00000031666	SMNDC1	100	99.160	ENSRROG00000044992	-	100	99.160	Rhinopithecus_roxellana
ENSCPOG00000031666	SMNDC1	100	83.193	ENSRROG00000039125	-	100	83.193	Rhinopithecus_roxellana
ENSCPOG00000031666	SMNDC1	100	99.160	ENSSBOG00000026789	SMNDC1	100	99.160	Saimiri_boliviensis_boliviensis
ENSCPOG00000031666	SMNDC1	100	98.319	ENSSHAG00000015189	SMNDC1	100	98.319	Sarcophilus_harrisii
ENSCPOG00000031666	SMNDC1	100	80.252	ENSSFOG00015008311	smndc1	100	80.252	Scleropages_formosus
ENSCPOG00000031666	SMNDC1	100	76.050	ENSSMAG00000020118	smndc1	100	76.050	Scophthalmus_maximus
ENSCPOG00000031666	SMNDC1	100	76.471	ENSSDUG00000015330	smndc1	100	76.471	Seriola_dumerili
ENSCPOG00000031666	SMNDC1	100	76.471	ENSSLDG00000017325	smndc1	100	76.471	Seriola_lalandi_dorsalis
ENSCPOG00000031666	SMNDC1	100	99.580	ENSSARG00000006063	SMNDC1	100	99.580	Sorex_araneus
ENSCPOG00000031666	SMNDC1	100	95.378	ENSSPUG00000004574	SMNDC1	100	95.378	Sphenodon_punctatus
ENSCPOG00000031666	SMNDC1	100	75.732	ENSSPAG00000000338	smndc1	100	75.732	Stegastes_partitus
ENSCPOG00000031666	SMNDC1	100	99.580	ENSSSCG00000030507	SMNDC1	100	99.580	Sus_scrofa
ENSCPOG00000031666	SMNDC1	100	95.378	ENSTGUG00000010599	SMNDC1	100	95.378	Taeniopygia_guttata
ENSCPOG00000031666	SMNDC1	100	73.950	ENSTRUG00000023281	smndc1	100	73.950	Takifugu_rubripes
ENSCPOG00000031666	SMNDC1	100	75.210	ENSTNIG00000013331	smndc1	100	75.210	Tetraodon_nigroviridis
ENSCPOG00000031666	SMNDC1	100	99.580	ENSTBEG00000014337	SMNDC1	100	99.580	Tupaia_belangeri
ENSCPOG00000031666	SMNDC1	100	99.160	ENSUAMG00000008142	SMNDC1	100	99.160	Ursus_americanus
ENSCPOG00000031666	SMNDC1	100	99.160	ENSUMAG00000023722	SMNDC1	100	99.160	Ursus_maritimus
ENSCPOG00000031666	SMNDC1	83	98.485	ENSVPAG00000003402	SMNDC1	100	98.485	Vicugna_pacos
ENSCPOG00000031666	SMNDC1	100	99.160	ENSVVUG00000007820	SMNDC1	100	99.160	Vulpes_vulpes
ENSCPOG00000031666	SMNDC1	60	80.986	ENSXETG00000015415	SMNDC1	100	80.986	Xenopus_tropicalis
ENSCPOG00000031666	SMNDC1	100	75.210	ENSXCOG00000009159	smndc1	100	75.210	Xiphophorus_couchianus
ENSCPOG00000031666	SMNDC1	100	74.790	ENSXMAG00000012755	smndc1	100	74.790	Xiphophorus_maculatus