EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCPOG00000033068 (Gene tree)
Gene ID: 100730186
Gene Symbol: APOBEC1
Alias: APOBEC-1|BEDP|CDAR1|HEPR
Full Name: C->U-editing enzyme APOBEC-1-like
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Minus strand
Length: 8637 bases
Position: chrDS562883.1:2008466-2017102
Accession: 100730186
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000027134	APOBEC_N	PF08210.11	3.2e-29	1	1
ENSCPOP00000027134	APOBEC_C	PF05240.14	5.9e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000043129	APOBEC1-201	1044	XM_013149809	ENSCPOP00000027134	236 (aa)	XP_013005263	A0A286XNR2

Gene Model

Click here to download ENSCPOG00000033068's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000033068's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000033068	APOBEC1	99	68.511	ENSG00000111701	APOBEC1	99	68.511	Homo_sapiens
ENSCPOG00000033068	APOBEC1	98	67.241	ENSAMEG00000007098	APOBEC1	98	67.241	Ailuropoda_melanoleuca
ENSCPOG00000033068	APOBEC1	72	42.442	ENSACAG00000028578	-	93	42.442	Anolis_carolinensis
ENSCPOG00000033068	APOBEC1	99	65.532	ENSANAG00000027743	APOBEC1	95	65.532	Aotus_nancymaae
ENSCPOG00000033068	APOBEC1	99	62.553	ENSBTAG00000014683	APOBEC1	99	62.553	Bos_taurus
ENSCPOG00000033068	APOBEC1	93	66.818	ENSCJAG00000005398	APOBEC1	99	66.818	Callithrix_jacchus
ENSCPOG00000033068	APOBEC1	99	67.234	ENSCAFG00000013901	APOBEC1	99	67.234	Canis_familiaris
ENSCPOG00000033068	APOBEC1	99	64.103	ENSCAFG00020003511	APOBEC1	98	64.103	Canis_lupus_dingo
ENSCPOG00000033068	APOBEC1	98	61.638	ENSCHIG00000011898	APOBEC1	96	61.638	Capra_hircus
ENSCPOG00000033068	APOBEC1	60	68.085	ENSTSYG00000029141	APOBEC1	100	68.085	Carlito_syrichta
ENSCPOG00000033068	APOBEC1	91	93.488	ENSCAPG00000015882	-	100	93.488	Cavia_aperea
ENSCPOG00000033068	APOBEC1	99	67.234	ENSCCAG00000022258	APOBEC1	99	67.234	Cebus_capucinus
ENSCPOG00000033068	APOBEC1	99	68.511	ENSCATG00000021613	APOBEC1	95	68.511	Cercocebus_atys
ENSCPOG00000033068	APOBEC1	97	86.522	ENSCLAG00000014645	APOBEC1	100	86.522	Chinchilla_lanigera
ENSCPOG00000033068	APOBEC1	80	68.783	ENSCSAG00000009817	APOBEC1	99	68.783	Chlorocebus_sabaeus
ENSCPOG00000033068	APOBEC1	83	43.500	ENSCPBG00000014328	-	88	43.500	Chrysemys_picta_bellii
ENSCPOG00000033068	APOBEC1	78	44.385	ENSCPBG00000014331	-	77	44.385	Chrysemys_picta_bellii
ENSCPOG00000033068	APOBEC1	78	46.524	ENSCPBG00000014335	-	76	46.524	Chrysemys_picta_bellii
ENSCPOG00000033068	APOBEC1	77	43.548	ENSCPBG00000017398	-	82	43.548	Chrysemys_picta_bellii
ENSCPOG00000033068	APOBEC1	80	45.550	ENSCPBG00000014327	-	83	37.674	Chrysemys_picta_bellii
ENSCPOG00000033068	APOBEC1	83	43.147	ENSCPBG00000014329	-	54	43.147	Chrysemys_picta_bellii
ENSCPOG00000033068	APOBEC1	97	68.559	ENSCANG00000038359	APOBEC1	99	68.559	Colobus_angolensis_palliatus
ENSCPOG00000033068	APOBEC1	97	60.262	ENSCGRG00001011130	Apobec1	100	60.262	Cricetulus_griseus_chok1gshd
ENSCPOG00000033068	APOBEC1	97	60.262	ENSCGRG00000008644	Apobec1	100	60.262	Cricetulus_griseus_crigri
ENSCPOG00000033068	APOBEC1	99	65.532	ENSDNOG00000010926	APOBEC1	99	65.532	Dasypus_novemcinctus
ENSCPOG00000033068	APOBEC1	86	59.314	ENSDORG00000023717	Apobec1	98	59.330	Dipodomys_ordii
ENSCPOG00000033068	APOBEC1	99	66.809	ENSETEG00000004867	APOBEC1	99	66.809	Echinops_telfairi
ENSCPOG00000033068	APOBEC1	98	68.103	ENSEASG00005015951	APOBEC1	97	68.103	Equus_asinus_asinus
ENSCPOG00000033068	APOBEC1	80	67.725	ENSECAG00000017163	APOBEC1	99	67.725	Equus_caballus
ENSCPOG00000033068	APOBEC1	86	48.039	ENSEEUG00000007530	-	97	48.039	Erinaceus_europaeus
ENSCPOG00000033068	APOBEC1	87	60.488	ENSEEUG00000009112	-	91	60.488	Erinaceus_europaeus
ENSCPOG00000033068	APOBEC1	99	67.660	ENSFCAG00000009350	APOBEC1	99	67.660	Felis_catus
ENSCPOG00000033068	APOBEC1	65	45.070	ENSFALG00000007257	-	72	45.070	Ficedula_albicollis
ENSCPOG00000033068	APOBEC1	88	70.531	ENSFDAG00000018470	APOBEC1	99	70.531	Fukomys_damarensis
ENSCPOG00000033068	APOBEC1	68	45.679	ENSGAGG00000004947	-	83	45.522	Gopherus_agassizii
ENSCPOG00000033068	APOBEC1	90	47.442	ENSGAGG00000011837	-	90	47.442	Gopherus_agassizii
ENSCPOG00000033068	APOBEC1	72	45.614	ENSGAGG00000006624	-	62	45.614	Gopherus_agassizii
ENSCPOG00000033068	APOBEC1	79	38.421	ENSGAGG00000021745	-	70	38.421	Gopherus_agassizii
ENSCPOG00000033068	APOBEC1	86	42.857	ENSGAGG00000021744	-	79	42.857	Gopherus_agassizii
ENSCPOG00000033068	APOBEC1	99	71.489	ENSHGLG00000001495	APOBEC1	99	71.489	Heterocephalus_glaber_female
ENSCPOG00000033068	APOBEC1	99	71.064	ENSHGLG00100002187	APOBEC1	99	71.064	Heterocephalus_glaber_male
ENSCPOG00000033068	APOBEC1	91	51.869	ENSSTOG00000021971	APOBEC1	100	66.327	Ictidomys_tridecemlineatus
ENSCPOG00000033068	APOBEC1	97	64.192	ENSJJAG00000022108	Apobec1	100	64.192	Jaculus_jaculus
ENSCPOG00000033068	APOBEC1	94	65.315	ENSLAFG00000030837	APOBEC1	99	65.315	Loxodonta_africana
ENSCPOG00000033068	APOBEC1	99	68.511	ENSMFAG00000000277	APOBEC1	99	68.783	Macaca_fascicularis
ENSCPOG00000033068	APOBEC1	99	68.085	ENSMNEG00000029670	APOBEC1	99	68.085	Macaca_nemestrina
ENSCPOG00000033068	APOBEC1	99	68.511	ENSMLEG00000036301	APOBEC1	99	68.511	Mandrillus_leucophaeus
ENSCPOG00000033068	APOBEC1	92	61.111	ENSMAUG00000022167	Apobec1	97	61.111	Mesocricetus_auratus
ENSCPOG00000033068	APOBEC1	99	68.936	ENSMICG00000043645	APOBEC1	99	68.936	Microcebus_murinus
ENSCPOG00000033068	APOBEC1	99	59.574	ENSMODG00000018004	APOBEC1	99	59.574	Monodelphis_domestica
ENSCPOG00000033068	APOBEC1	97	62.281	ENSMUSG00000040613	Apobec1	99	63.333	Mus_musculus
ENSCPOG00000033068	APOBEC1	97	60.965	MGP_PahariEiJ_G0022580	-	99	61.667	Mus_pahari
ENSCPOG00000033068	APOBEC1	97	62.281	MGP_SPRETEiJ_G0029857	Apobec1	99	63.333	Mus_spretus
ENSCPOG00000033068	APOBEC1	99	64.681	ENSMPUG00000017532	APOBEC1	99	64.681	Mustela_putorius_furo
ENSCPOG00000033068	APOBEC1	97	60.262	ENSNGAG00000022607	Apobec1	100	60.262	Nannospalax_galili
ENSCPOG00000033068	APOBEC1	99	68.085	ENSNLEG00000005342	APOBEC1	99	68.085	Nomascus_leucogenys
ENSCPOG00000033068	APOBEC1	99	57.021	ENSMEUG00000013406	APOBEC1	99	57.021	Notamacropus_eugenii
ENSCPOG00000033068	APOBEC1	77	58.011	ENSOPRG00000009508	-	100	58.011	Ochotona_princeps
ENSCPOG00000033068	APOBEC1	99	65.532	ENSOCUG00000025736	APOBEC1	88	65.532	Oryctolagus_cuniculus
ENSCPOG00000033068	APOBEC1	98	67.672	ENSOGAG00000026415	APOBEC1	98	67.672	Otolemur_garnettii
ENSCPOG00000033068	APOBEC1	99	62.128	ENSOARG00000002072	APOBEC1	98	62.128	Ovis_aries
ENSCPOG00000033068	APOBEC1	98	63.793	ENSPPAG00000027657	APOBEC1	98	63.793	Pan_paniscus
ENSCPOG00000033068	APOBEC1	99	67.234	ENSPPRG00000012182	APOBEC1	99	67.234	Panthera_pardus
ENSCPOG00000033068	APOBEC1	99	67.234	ENSPTIG00000020280	APOBEC1	99	67.234	Panthera_tigris_altaica
ENSCPOG00000033068	APOBEC1	99	68.936	ENSPTRG00000004614	APOBEC1	99	68.936	Pan_troglodytes
ENSCPOG00000033068	APOBEC1	99	68.511	ENSPANG00000021027	APOBEC1	99	68.511	Papio_anubis
ENSCPOG00000033068	APOBEC1	53	50.000	ENSPSIG00000012791	-	72	50.000	Pelodiscus_sinensis
ENSCPOG00000033068	APOBEC1	78	44.324	ENSPSIG00000012568	-	80	44.324	Pelodiscus_sinensis
ENSCPOG00000033068	APOBEC1	97	62.009	ENSPEMG00000023841	Apobec1	100	62.009	Peromyscus_maniculatus_bairdii
ENSCPOG00000033068	APOBEC1	99	61.277	ENSPCIG00000023973	APOBEC1	99	61.277	Phascolarctos_cinereus
ENSCPOG00000033068	APOBEC1	99	66.809	ENSPPYG00000004228	APOBEC1	95	66.809	Pongo_abelii
ENSCPOG00000033068	APOBEC1	79	68.449	ENSPCAG00000008733	APOBEC1	100	68.449	Procavia_capensis
ENSCPOG00000033068	APOBEC1	94	67.873	ENSPCOG00000013957	APOBEC1	98	67.873	Propithecus_coquereli
ENSCPOG00000033068	APOBEC1	99	51.064	ENSPVAG00000010709	APOBEC1	99	51.064	Pteropus_vampyrus
ENSCPOG00000033068	APOBEC1	97	59.649	ENSRNOG00000015411	Apobec1	99	59.649	Rattus_norvegicus
ENSCPOG00000033068	APOBEC1	99	67.234	ENSRBIG00000031161	APOBEC1	99	67.234	Rhinopithecus_bieti
ENSCPOG00000033068	APOBEC1	99	67.234	ENSRROG00000033576	APOBEC1	99	67.234	Rhinopithecus_roxellana
ENSCPOG00000033068	APOBEC1	73	68.786	ENSSBOG00000030587	APOBEC1	98	68.786	Saimiri_boliviensis_boliviensis
ENSCPOG00000033068	APOBEC1	96	61.504	ENSSHAG00000008925	APOBEC1	99	61.504	Sarcophilus_harrisii
ENSCPOG00000033068	APOBEC1	73	61.047	ENSSARG00000000032	-	100	61.047	Sorex_araneus
ENSCPOG00000033068	APOBEC1	55	66.667	ENSSARG00000011972	-	98	66.667	Sorex_araneus
ENSCPOG00000033068	APOBEC1	89	40.930	ENSSPUG00000009044	-	82	40.930	Sphenodon_punctatus
ENSCPOG00000033068	APOBEC1	97	67.249	ENSSSCG00000000668	APOBEC1	97	67.249	Sus_scrofa
ENSCPOG00000033068	APOBEC1	61	46.528	ENSTGUG00000013118	-	99	46.528	Taeniopygia_guttata
ENSCPOG00000033068	APOBEC1	99	61.277	ENSTBEG00000010043	APOBEC1	99	61.277	Tupaia_belangeri
ENSCPOG00000033068	APOBEC1	79	64.706	ENSTTRG00000014015	APOBEC1	100	64.706	Tursiops_truncatus
ENSCPOG00000033068	APOBEC1	98	66.810	ENSUAMG00000011636	APOBEC1	95	66.810	Ursus_americanus
ENSCPOG00000033068	APOBEC1	98	66.810	ENSUMAG00000016552	APOBEC1	95	66.810	Ursus_maritimus
ENSCPOG00000033068	APOBEC1	99	67.660	ENSVPAG00000001343	APOBEC1	99	67.660	Vicugna_pacos
ENSCPOG00000033068	APOBEC1	99	67.660	ENSVVUG00000010522	APOBEC1	99	67.660	Vulpes_vulpes