EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPOG00000033167 (Gene tree)
Gene ID: -
Gene Symbol: PABPC4L
Alias: -
Full Name: poly(A) binding protein cytoplasmic 4 like
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Minus strand
Length: 1112 bases
Position: chrDS562862.1:13998186-13999297
Accession: 100728916
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000029427	RRM_5	PF13893.6	1e-13	1	3
ENSCPOP00000029427	RRM_5	PF13893.6	1e-13	2	3
ENSCPOP00000029427	RRM_5	PF13893.6	1e-13	3	3
ENSCPOP00000029427	RRM_1	PF00076.22	1.1e-72	1	4
ENSCPOP00000029427	RRM_1	PF00076.22	1.1e-72	2	4
ENSCPOP00000029427	RRM_1	PF00076.22	1.1e-72	3	4
ENSCPOP00000029427	RRM_1	PF00076.22	1.1e-72	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000041445	PABPC4L-201	1080	XM_013160077	ENSCPOP00000029427	359 (aa)	XP_013015531	A0A286XVS0

Gene Model

Click here to download ENSCPOG00000033167's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000033167's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPOG00000033167	PABPC4L	91	31.452	ENSCPOG00000002044	-	86	31.452
ENSCPOG00000033167	PABPC4L	96	52.551	ENSCPOG00000009525	-	98	52.551
ENSCPOG00000033167	PABPC4L	97	30.818	ENSCPOG00000008327	TIA1	85	30.818
ENSCPOG00000033167	PABPC4L	96	57.022	ENSCPOG00000002555	PABPC5	96	57.143
ENSCPOG00000033167	PABPC4L	99	65.583	ENSCPOG00000009552	PABPC4	61	65.583
ENSCPOG00000033167	PABPC4L	89	65.798	ENSCPOG00000012917	PABPC1	55	65.798
ENSCPOG00000033167	PABPC4L	62	37.662	ENSCPOG00000012164	RBMX	78	37.662
ENSCPOG00000033167	PABPC4L	98	58.242	ENSCPOG00000013633	PABPC1L	61	58.242

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000033167	PABPC4L	100	78.378	ENSG00000254535	PABPC4L	100	78.378	Homo_sapiens
ENSCPOG00000033167	PABPC4L	100	77.297	ENSANAG00000017199	PABPC4L	87	77.297	Aotus_nancymaae
ENSCPOG00000033167	PABPC4L	100	76.423	ENSBTAG00000046902	PABPC4L	99	76.423	Bos_taurus
ENSCPOG00000033167	PABPC4L	100	77.027	ENSCJAG00000045332	PABPC4L	86	77.027	Callithrix_jacchus
ENSCPOG00000033167	PABPC4L	100	68.750	ENSCAFG00020019182	-	54	68.750	Canis_lupus_dingo
ENSCPOG00000033167	PABPC4L	100	76.423	ENSCHIG00000007231	PABPC4L	99	76.423	Capra_hircus
ENSCPOG00000033167	PABPC4L	91	99.694	ENSCAPG00000000555	PABPC4L	98	99.694	Cavia_aperea
ENSCPOG00000033167	PABPC4L	100	77.027	ENSCCAG00000031681	PABPC4L	86	77.027	Cebus_capucinus
ENSCPOG00000033167	PABPC4L	100	80.811	ENSCLAG00000017628	PABPC4L	100	80.811	Chinchilla_lanigera
ENSCPOG00000033167	PABPC4L	100	77.507	ENSCANG00000037677	PABPC4L	99	77.507	Colobus_angolensis_palliatus
ENSCPOG00000033167	PABPC4L	100	70.541	ENSCGRG00001002070	Pabpc4l	100	70.541	Cricetulus_griseus_chok1gshd
ENSCPOG00000033167	PABPC4L	100	70.541	ENSCGRG00000020086	Pabpc4l	100	70.541	Cricetulus_griseus_crigri
ENSCPOG00000033167	PABPC4L	100	76.216	ENSDNOG00000031077	PABPC4L	95	76.216	Dasypus_novemcinctus
ENSCPOG00000033167	PABPC4L	100	75.339	ENSEASG00005007883	PABPC4L	99	75.339	Equus_asinus_asinus
ENSCPOG00000033167	PABPC4L	100	75.881	ENSECAG00000031416	PABPC4L	99	75.881	Equus_caballus
ENSCPOG00000033167	PABPC4L	100	77.236	ENSFCAG00000028270	PABPC4L	99	77.236	Felis_catus
ENSCPOG00000033167	PABPC4L	100	80.217	ENSFDAG00000019606	PABPC4L	99	80.217	Fukomys_damarensis
ENSCPOG00000033167	PABPC4L	100	77.838	ENSGGOG00000024991	PABPC4L	100	77.838	Gorilla_gorilla
ENSCPOG00000033167	PABPC4L	100	80.488	ENSHGLG00000020104	PABPC4L	99	80.488	Heterocephalus_glaber_female
ENSCPOG00000033167	PABPC4L	100	80.488	ENSHGLG00100020648	PABPC4L	99	80.488	Heterocephalus_glaber_male
ENSCPOG00000033167	PABPC4L	100	73.585	ENSSTOG00000019472	PABPC4L	99	73.585	Ictidomys_tridecemlineatus
ENSCPOG00000033167	PABPC4L	100	73.442	ENSJJAG00000004090	Pabpc4l	99	73.442	Jaculus_jaculus
ENSCPOG00000033167	PABPC4L	100	71.351	ENSMAUG00000016313	Pabpc4l	100	71.351	Mesocricetus_auratus
ENSCPOG00000033167	PABPC4L	100	78.919	ENSMICG00000029683	PABPC4L	100	78.919	Microcebus_murinus
ENSCPOG00000033167	PABPC4L	100	73.243	ENSMOCG00000007551	Pabpc4l	100	73.243	Microtus_ochrogaster
ENSCPOG00000033167	PABPC4L	100	70.270	MGP_CAROLIEiJ_G0024968	Pabpc4l	100	70.270	Mus_caroli
ENSCPOG00000033167	PABPC4L	100	70.000	ENSMUSG00000090919	Pabpc4l	100	70.000	Mus_musculus
ENSCPOG00000033167	PABPC4L	100	70.000	MGP_PahariEiJ_G0026409	Pabpc4l	100	70.000	Mus_pahari
ENSCPOG00000033167	PABPC4L	100	69.459	MGP_SPRETEiJ_G0025903	Pabpc4l	100	69.459	Mus_spretus
ENSCPOG00000033167	PABPC4L	100	68.564	ENSMLUG00000008254	PABPC4L	99	68.564	Myotis_lucifugus
ENSCPOG00000033167	PABPC4L	100	74.324	ENSNGAG00000001502	Pabpc4l	100	74.324	Nannospalax_galili
ENSCPOG00000033167	PABPC4L	100	78.108	ENSNLEG00000019300	PABPC4L	100	78.108	Nomascus_leucogenys
ENSCPOG00000033167	PABPC4L	100	72.432	ENSOGAG00000026166	PABPC4L	100	72.432	Otolemur_garnettii
ENSCPOG00000033167	PABPC4L	100	78.019	ENSPPAG00000043745	PABPC4L	92	78.019	Pan_paniscus
ENSCPOG00000033167	PABPC4L	100	77.236	ENSPPRG00000018628	PABPC4L	99	77.236	Panthera_pardus
ENSCPOG00000033167	PABPC4L	100	77.236	ENSPTIG00000010106	PABPC4L	99	77.236	Panthera_tigris_altaica
ENSCPOG00000033167	PABPC4L	100	78.019	ENSPTRG00000045513	-	80	78.019	Pan_troglodytes
ENSCPOG00000033167	PABPC4L	100	72.162	ENSPEMG00000012565	Pabpc4l	100	72.162	Peromyscus_maniculatus_bairdii
ENSCPOG00000033167	PABPC4L	100	78.919	ENSPCOG00000025578	PABPC4L	100	78.919	Propithecus_coquereli
ENSCPOG00000033167	PABPC4L	100	70.270	ENSRNOG00000029749	Pabpc4l	100	70.270	Rattus_norvegicus
ENSCPOG00000033167	PABPC4L	100	76.694	ENSRBIG00000030229	PABPC4L	99	76.694	Rhinopithecus_bieti
ENSCPOG00000033167	PABPC4L	100	76.423	ENSRROG00000020367	PABPC4L	99	76.423	Rhinopithecus_roxellana
ENSCPOG00000033167	PABPC4L	100	77.838	ENSSBOG00000016382	PABPC4L	100	77.838	Saimiri_boliviensis_boliviensis
ENSCPOG00000033167	PABPC4L	100	70.732	ENSSSCG00000009067	PABPC4L	99	70.732	Sus_scrofa
ENSCPOG00000033167	PABPC4L	100	76.152	ENSUAMG00000001289	PABPC4L	99	76.152	Ursus_americanus
ENSCPOG00000033167	PABPC4L	100	76.152	ENSUMAG00000014887	PABPC4L	99	76.152	Ursus_maritimus
ENSCPOG00000033167	PABPC4L	96	66.867	ENSVVUG00000011060	-	76	66.867	Vulpes_vulpes