EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCPOG00000034604 (Gene tree)
Gene ID: 100718725
Gene Symbol: RPUSD1
Alias: C16orf40|MGC19600|RLUCL
Full Name: RNA pseudouridine synthase domain containing 1
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Minus strand
Length: 6208 bases
Position: chrDS562859.1:20749504-20755711
Accession: 100718725
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000030672	PseudoU_synth_2	PF00849.22	7.8e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000031577	RPUSD1-201	5307	XM_013142066	ENSCPOP00000030672	306 (aa)	XP_012997520	A0A286XYN6

Gene Model

Click here to download ENSCPOG00000034604's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000034604's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000034604	RPUSD1	100	81.410	ENSG00000007376	RPUSD1	100	86.310	Homo_sapiens
ENSCPOG00000034604	RPUSD1	98	56.291	ENSAPOG00000022221	rpusd1	98	56.291	Acanthochromis_polyacanthus
ENSCPOG00000034604	RPUSD1	100	83.007	ENSAMEG00000007461	RPUSD1	100	83.007	Ailuropoda_melanoleuca
ENSCPOG00000034604	RPUSD1	83	65.217	ENSACIG00000015863	rpusd1	98	57.843	Amphilophus_citrinellus
ENSCPOG00000034604	RPUSD1	98	56.066	ENSAOCG00000021975	rpusd1	95	56.066	Amphiprion_ocellaris
ENSCPOG00000034604	RPUSD1	98	56.393	ENSAPEG00000001316	rpusd1	95	56.393	Amphiprion_percula
ENSCPOG00000034604	RPUSD1	83	65.217	ENSATEG00000002984	rpusd1	98	57.705	Anabas_testudineus
ENSCPOG00000034604	RPUSD1	78	58.065	ENSAPLG00000012316	RPUSD1	100	58.065	Anas_platyrhynchos
ENSCPOG00000034604	RPUSD1	99	67.541	ENSACAG00000008953	RPUSD1	100	67.541	Anolis_carolinensis
ENSCPOG00000034604	RPUSD1	100	83.013	ENSANAG00000024709	RPUSD1	100	84.615	Aotus_nancymaae
ENSCPOG00000034604	RPUSD1	83	65.613	ENSACLG00000013692	rpusd1	98	57.980	Astatotilapia_calliptera
ENSCPOG00000034604	RPUSD1	99	58.746	ENSAMXG00000019802	rpusd1	100	58.746	Astyanax_mexicanus
ENSCPOG00000034604	RPUSD1	100	85.065	ENSBTAG00000000179	RPUSD1	100	86.039	Bos_taurus
ENSCPOG00000034604	RPUSD1	100	82.692	ENSCJAG00000012253	RPUSD1	100	83.333	Callithrix_jacchus
ENSCPOG00000034604	RPUSD1	100	83.007	ENSCAFG00000019614	RPUSD1	100	83.333	Canis_familiaris
ENSCPOG00000034604	RPUSD1	100	83.007	ENSCAFG00020008891	RPUSD1	100	83.333	Canis_lupus_dingo
ENSCPOG00000034604	RPUSD1	100	84.740	ENSCHIG00000012872	RPUSD1	100	85.714	Capra_hircus
ENSCPOG00000034604	RPUSD1	100	83.987	ENSTSYG00000036934	RPUSD1	100	83.987	Carlito_syrichta
ENSCPOG00000034604	RPUSD1	100	100.000	ENSCAPG00000014219	RPUSD1	100	100.000	Cavia_aperea
ENSCPOG00000034604	RPUSD1	100	83.654	ENSCCAG00000034385	RPUSD1	100	84.295	Cebus_capucinus
ENSCPOG00000034604	RPUSD1	100	82.692	ENSCATG00000042983	RPUSD1	100	83.333	Cercocebus_atys
ENSCPOG00000034604	RPUSD1	100	96.405	ENSCLAG00000013966	RPUSD1	100	96.405	Chinchilla_lanigera
ENSCPOG00000034604	RPUSD1	100	82.692	ENSCSAG00000012121	RPUSD1	100	83.333	Chlorocebus_sabaeus
ENSCPOG00000034604	RPUSD1	99	65.246	ENSCPBG00000021101	RPUSD1	99	65.246	Chrysemys_picta_bellii
ENSCPOG00000034604	RPUSD1	92	86.121	ENSCANG00000028576	RPUSD1	100	86.121	Colobus_angolensis_palliatus
ENSCPOG00000034604	RPUSD1	100	86.275	ENSCGRG00001014253	Rpusd1	100	86.275	Cricetulus_griseus_chok1gshd
ENSCPOG00000034604	RPUSD1	100	86.275	ENSCGRG00000017995	Rpusd1	100	86.275	Cricetulus_griseus_crigri
ENSCPOG00000034604	RPUSD1	99	56.066	ENSCSEG00000018512	rpusd1	100	56.066	Cynoglossus_semilaevis
ENSCPOG00000034604	RPUSD1	98	56.667	ENSCVAG00000022746	rpusd1	98	56.667	Cyprinodon_variegatus
ENSCPOG00000034604	RPUSD1	99	61.184	ENSDARG00000060192	rpusd1	100	61.184	Danio_rerio
ENSCPOG00000034604	RPUSD1	100	80.195	ENSDNOG00000003721	RPUSD1	100	80.128	Dasypus_novemcinctus
ENSCPOG00000034604	RPUSD1	100	88.235	ENSDORG00000026656	Rpusd1	100	88.562	Dipodomys_ordii
ENSCPOG00000034604	RPUSD1	99	47.022	ENSEBUG00000008767	rpusd1	94	47.022	Eptatretus_burgeri
ENSCPOG00000034604	RPUSD1	100	82.911	ENSEASG00005018421	RPUSD1	76	84.494	Equus_asinus_asinus
ENSCPOG00000034604	RPUSD1	83	60.630	ENSELUG00000014307	rpusd1	88	55.082	Esox_lucius
ENSCPOG00000034604	RPUSD1	100	83.333	ENSFCAG00000010359	RPUSD1	100	83.333	Felis_catus
ENSCPOG00000034604	RPUSD1	99	65.677	ENSFALG00000003211	RPUSD1	100	65.677	Ficedula_albicollis
ENSCPOG00000034604	RPUSD1	100	96.078	ENSFDAG00000013398	RPUSD1	100	96.078	Fukomys_damarensis
ENSCPOG00000034604	RPUSD1	83	62.846	ENSFHEG00000004736	rpusd1	98	56.436	Fundulus_heteroclitus
ENSCPOG00000034604	RPUSD1	83	62.846	ENSGMOG00000010756	rpusd1	98	55.592	Gadus_morhua
ENSCPOG00000034604	RPUSD1	99	64.610	ENSGALG00000005315	RPUSD1	100	64.610	Gallus_gallus
ENSCPOG00000034604	RPUSD1	98	57.000	ENSGAFG00000009886	rpusd1	98	57.000	Gambusia_affinis
ENSCPOG00000034604	RPUSD1	82	63.745	ENSGACG00000014276	rpusd1	97	55.776	Gasterosteus_aculeatus
ENSCPOG00000034604	RPUSD1	99	64.590	ENSGAGG00000004181	RPUSD1	99	64.590	Gopherus_agassizii
ENSCPOG00000034604	RPUSD1	100	81.090	ENSGGOG00000013997	RPUSD1	100	81.731	Gorilla_gorilla
ENSCPOG00000034604	RPUSD1	83	65.217	ENSHBUG00000023728	rpusd1	98	57.655	Haplochromis_burtoni
ENSCPOG00000034604	RPUSD1	100	96.405	ENSHGLG00000002595	RPUSD1	100	96.405	Heterocephalus_glaber_female
ENSCPOG00000034604	RPUSD1	100	96.405	ENSHGLG00100014303	RPUSD1	100	96.405	Heterocephalus_glaber_male
ENSCPOG00000034604	RPUSD1	98	57.475	ENSHCOG00000002390	rpusd1	99	57.475	Hippocampus_comes
ENSCPOG00000034604	RPUSD1	99	59.736	ENSIPUG00000001570	rpusd1	99	59.736	Ictalurus_punctatus
ENSCPOG00000034604	RPUSD1	100	89.542	ENSSTOG00000004276	RPUSD1	100	89.542	Ictidomys_tridecemlineatus
ENSCPOG00000034604	RPUSD1	100	88.562	ENSJJAG00000015696	Rpusd1	100	88.562	Jaculus_jaculus
ENSCPOG00000034604	RPUSD1	98	56.000	ENSKMAG00000017287	rpusd1	98	56.623	Kryptolebias_marmoratus
ENSCPOG00000034604	RPUSD1	83	64.032	ENSLBEG00000013354	RPUSD1	98	56.393	Labrus_bergylta
ENSCPOG00000034604	RPUSD1	83	64.032	ENSLBEG00000022502	rpusd1	98	56.393	Labrus_bergylta
ENSCPOG00000034604	RPUSD1	99	61.589	ENSLACG00000008869	RPUSD1	99	61.589	Latimeria_chalumnae
ENSCPOG00000034604	RPUSD1	71	73.611	ENSLOCG00000005682	rpusd1	99	73.611	Lepisosteus_oculatus
ENSCPOG00000034604	RPUSD1	100	81.046	ENSLAFG00000002115	RPUSD1	100	81.046	Loxodonta_africana
ENSCPOG00000034604	RPUSD1	100	83.013	ENSMFAG00000003961	RPUSD1	100	83.654	Macaca_fascicularis
ENSCPOG00000034604	RPUSD1	100	83.013	ENSMMUG00000000842	RPUSD1	100	83.654	Macaca_mulatta
ENSCPOG00000034604	RPUSD1	100	83.013	ENSMNEG00000042712	RPUSD1	100	83.654	Macaca_nemestrina
ENSCPOG00000034604	RPUSD1	100	83.013	ENSMLEG00000030591	RPUSD1	100	83.654	Mandrillus_leucophaeus
ENSCPOG00000034604	RPUSD1	83	65.217	ENSMAMG00000004735	rpusd1	98	57.843	Mastacembelus_armatus
ENSCPOG00000034604	RPUSD1	83	65.613	ENSMZEG00005003214	rpusd1	98	57.980	Maylandia_zebra
ENSCPOG00000034604	RPUSD1	97	64.026	ENSMGAG00000005447	RPUSD1	99	64.026	Meleagris_gallopavo
ENSCPOG00000034604	RPUSD1	86	81.679	ENSMAUG00000019998	Rpusd1	100	81.679	Mesocricetus_auratus
ENSCPOG00000034604	RPUSD1	100	85.668	ENSMICG00000017561	RPUSD1	100	85.577	Microcebus_murinus
ENSCPOG00000034604	RPUSD1	100	88.235	ENSMOCG00000014082	Rpusd1	100	88.235	Microtus_ochrogaster
ENSCPOG00000034604	RPUSD1	80	65.714	ENSMMOG00000012569	rpusd1	99	57.000	Mola_mola
ENSCPOG00000034604	RPUSD1	100	69.355	ENSMODG00000016882	RPUSD1	100	69.677	Monodelphis_domestica
ENSCPOG00000034604	RPUSD1	83	64.822	ENSMALG00000017818	rpusd1	98	57.843	Monopterus_albus
ENSCPOG00000034604	RPUSD1	100	89.216	MGP_CAROLIEiJ_G0021244	Rpusd1	100	89.216	Mus_caroli
ENSCPOG00000034604	RPUSD1	100	89.216	ENSMUSG00000041199	Rpusd1	100	89.216	Mus_musculus
ENSCPOG00000034604	RPUSD1	100	87.662	MGP_PahariEiJ_G0023562	Rpusd1	100	87.662	Mus_pahari
ENSCPOG00000034604	RPUSD1	100	89.216	MGP_SPRETEiJ_G0022155	Rpusd1	100	89.216	Mus_spretus
ENSCPOG00000034604	RPUSD1	100	81.699	ENSMPUG00000015897	RPUSD1	100	83.333	Mustela_putorius_furo
ENSCPOG00000034604	RPUSD1	100	85.897	ENSMLUG00000001089	RPUSD1	100	86.538	Myotis_lucifugus
ENSCPOG00000034604	RPUSD1	100	88.562	ENSNGAG00000003595	Rpusd1	100	88.562	Nannospalax_galili
ENSCPOG00000034604	RPUSD1	81	65.182	ENSNBRG00000006457	rpusd1	98	57.860	Neolamprologus_brichardi
ENSCPOG00000034604	RPUSD1	55	77.714	ENSNLEG00000008424	-	100	79.429	Nomascus_leucogenys
ENSCPOG00000034604	RPUSD1	100	69.775	ENSMEUG00000016049	RPUSD1	100	69.775	Notamacropus_eugenii
ENSCPOG00000034604	RPUSD1	99	79.276	ENSOPRG00000008340	RPUSD1	99	79.276	Ochotona_princeps
ENSCPOG00000034604	RPUSD1	100	94.771	ENSODEG00000016945	RPUSD1	100	94.771	Octodon_degus
ENSCPOG00000034604	RPUSD1	83	64.032	ENSONIG00000015672	rpusd1	99	57.655	Oreochromis_niloticus
ENSCPOG00000034604	RPUSD1	99	57.947	ENSORLG00000013009	rpusd1	99	57.947	Oryzias_latipes
ENSCPOG00000034604	RPUSD1	99	57.616	ENSORLG00020010382	rpusd1	99	57.616	Oryzias_latipes_hni
ENSCPOG00000034604	RPUSD1	99	56.954	ENSORLG00015021354	rpusd1	99	56.954	Oryzias_latipes_hsok
ENSCPOG00000034604	RPUSD1	98	57.525	ENSOMEG00000021426	rpusd1	98	57.525	Oryzias_melastigma
ENSCPOG00000034604	RPUSD1	100	87.821	ENSOGAG00000003795	RPUSD1	100	87.821	Otolemur_garnettii
ENSCPOG00000034604	RPUSD1	100	84.740	ENSOARG00000014254	RPUSD1	100	85.714	Ovis_aries
ENSCPOG00000034604	RPUSD1	100	81.090	ENSPPAG00000034797	RPUSD1	100	81.731	Pan_paniscus
ENSCPOG00000034604	RPUSD1	100	83.007	ENSPPRG00000012389	RPUSD1	100	83.007	Panthera_pardus
ENSCPOG00000034604	RPUSD1	100	82.680	ENSPTIG00000008545	RPUSD1	92	82.680	Panthera_tigris_altaica
ENSCPOG00000034604	RPUSD1	100	81.090	ENSPTRG00000007565	RPUSD1	100	81.731	Pan_troglodytes
ENSCPOG00000034604	RPUSD1	100	82.372	ENSPANG00000024401	RPUSD1	100	83.013	Papio_anubis
ENSCPOG00000034604	RPUSD1	99	59.615	ENSPKIG00000018890	rpusd1	91	59.615	Paramormyrops_kingsleyae
ENSCPOG00000034604	RPUSD1	99	65.686	ENSPSIG00000013945	RPUSD1	100	65.686	Pelodiscus_sinensis
ENSCPOG00000034604	RPUSD1	98	58.528	ENSPMGG00000014950	rpusd1	98	58.528	Periophthalmus_magnuspinnatus
ENSCPOG00000034604	RPUSD1	100	87.582	ENSPEMG00000000497	Rpusd1	100	87.582	Peromyscus_maniculatus_bairdii
ENSCPOG00000034604	RPUSD1	84	55.985	ENSPMAG00000001563	rpusd1	99	50.329	Petromyzon_marinus
ENSCPOG00000034604	RPUSD1	100	69.329	ENSPCIG00000021216	-	94	69.329	Phascolarctos_cinereus
ENSCPOG00000034604	RPUSD1	98	58.194	ENSPFOG00000007946	rpusd1	98	58.194	Poecilia_formosa
ENSCPOG00000034604	RPUSD1	98	58.528	ENSPLAG00000011925	rpusd1	98	58.528	Poecilia_latipinna
ENSCPOG00000034604	RPUSD1	98	57.860	ENSPMEG00000002910	rpusd1	98	57.860	Poecilia_mexicana
ENSCPOG00000034604	RPUSD1	98	58.000	ENSPREG00000019851	rpusd1	98	58.000	Poecilia_reticulata
ENSCPOG00000034604	RPUSD1	100	66.340	ENSPCAG00000002258	RPUSD1	100	66.340	Procavia_capensis
ENSCPOG00000034604	RPUSD1	100	87.179	ENSPCOG00000022582	RPUSD1	100	87.179	Propithecus_coquereli
ENSCPOG00000034604	RPUSD1	100	82.372	ENSPVAG00000013104	RPUSD1	100	83.013	Pteropus_vampyrus
ENSCPOG00000034604	RPUSD1	83	65.217	ENSPNYG00000024076	rpusd1	98	57.860	Pundamilia_nyererei
ENSCPOG00000034604	RPUSD1	99	57.096	ENSPNAG00000013806	rpusd1	100	57.096	Pygocentrus_nattereri
ENSCPOG00000034604	RPUSD1	100	88.562	ENSRNOG00000023639	Rpusd1	100	88.562	Rattus_norvegicus
ENSCPOG00000034604	RPUSD1	100	82.692	ENSRBIG00000030238	RPUSD1	100	83.333	Rhinopithecus_bieti
ENSCPOG00000034604	RPUSD1	100	82.692	ENSRROG00000036663	RPUSD1	100	83.333	Rhinopithecus_roxellana
ENSCPOG00000034604	RPUSD1	100	82.680	ENSSBOG00000033063	RPUSD1	100	83.987	Saimiri_boliviensis_boliviensis
ENSCPOG00000034604	RPUSD1	100	68.690	ENSSHAG00000013500	RPUSD1	100	68.690	Sarcophilus_harrisii
ENSCPOG00000034604	RPUSD1	99	60.328	ENSSFOG00015014394	rpusd1	99	60.328	Scleropages_formosus
ENSCPOG00000034604	RPUSD1	83	64.032	ENSSMAG00000008045	rpusd1	91	56.352	Scophthalmus_maximus
ENSCPOG00000034604	RPUSD1	83	66.008	ENSSDUG00000001829	rpusd1	95	58.361	Seriola_dumerili
ENSCPOG00000034604	RPUSD1	83	66.008	ENSSLDG00000020853	rpusd1	95	58.361	Seriola_lalandi_dorsalis
ENSCPOG00000034604	RPUSD1	55	87.425	ENSSARG00000011187	-	100	87.425	Sorex_araneus
ENSCPOG00000034604	RPUSD1	63	53.500	ENSSPUG00000005119	-	100	53.500	Sphenodon_punctatus
ENSCPOG00000034604	RPUSD1	98	57.705	ENSSPAG00000012708	rpusd1	98	57.705	Stegastes_partitus
ENSCPOG00000034604	RPUSD1	100	82.372	ENSSSCG00000008000	RPUSD1	99	86.381	Sus_scrofa
ENSCPOG00000034604	RPUSD1	83	72.941	ENSTGUG00000015375	RPUSD1	100	72.941	Taeniopygia_guttata
ENSCPOG00000034604	RPUSD1	98	56.536	ENSTRUG00000003041	rpusd1	98	56.536	Takifugu_rubripes
ENSCPOG00000034604	RPUSD1	83	62.055	ENSTNIG00000002660	rpusd1	92	62.055	Tetraodon_nigroviridis
ENSCPOG00000034604	RPUSD1	100	84.936	ENSTTRG00000010167	RPUSD1	100	84.936	Tursiops_truncatus
ENSCPOG00000034604	RPUSD1	100	83.333	ENSUAMG00000012736	RPUSD1	100	83.660	Ursus_americanus
ENSCPOG00000034604	RPUSD1	100	83.333	ENSUMAG00000021174	RPUSD1	100	83.660	Ursus_maritimus
ENSCPOG00000034604	RPUSD1	100	82.680	ENSVVUG00000012357	RPUSD1	100	82.680	Vulpes_vulpes
ENSCPOG00000034604	RPUSD1	100	59.804	ENSXETG00000007184	rpusd1	100	59.804	Xenopus_tropicalis
ENSCPOG00000034604	RPUSD1	98	56.667	ENSXCOG00000017930	rpusd1	98	56.667	Xiphophorus_couchianus
ENSCPOG00000034604	RPUSD1	98	56.436	ENSXMAG00000024084	rpusd1	98	56.436	Xiphophorus_maculatus