EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPOG00000037956 (Gene tree)
Gene ID: 100730601
Gene Symbol: RPUSD3
Alias: MGC29784
Full Name: RNA pseudouridine synthase D3
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Plus strand
Length: 6383 bases
Position: chrDS562942.1:867058-873440
Accession: 100730601
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000024199	PseudoU_synth_2	PF00849.22	3.3e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000043232	RPUSD3-201	3930	XM_003464130	ENSCPOP00000024199	355 (aa)	XP_003464178	A0A286XFF4

Gene Model

Click here to download ENSCPOG00000037956's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000037956's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPOG00000037956	RPUSD3	76	30.389	ENSCPOG00000014971	RPUSD4	67	30.882

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000037956	RPUSD3	91	68.116	ENSG00000156990	RPUSD3	98	68.116	Homo_sapiens
ENSCPOG00000037956	RPUSD3	92	65.616	ENSAMEG00000016227	RPUSD3	99	65.616	Ailuropoda_melanoleuca
ENSCPOG00000037956	RPUSD3	85	51.316	ENSACAG00000009836	RPUSD3	75	54.924	Anolis_carolinensis
ENSCPOG00000037956	RPUSD3	54	72.251	ENSANAG00000038118	-	75	78.846	Aotus_nancymaae
ENSCPOG00000037956	RPUSD3	57	68.627	ENSANAG00000019945	-	63	79.747	Aotus_nancymaae
ENSCPOG00000037956	RPUSD3	63	53.846	ENSANAG00000007127	-	73	55.629	Aotus_nancymaae
ENSCPOG00000037956	RPUSD3	86	74.351	ENSBTAG00000007968	RPUSD3	89	74.351	Bos_taurus
ENSCPOG00000037956	RPUSD3	86	72.787	ENSCAFG00000029733	RPUSD3	75	78.788	Canis_familiaris
ENSCPOG00000037956	RPUSD3	86	72.787	ENSCAFG00020008582	RPUSD3	80	78.788	Canis_lupus_dingo
ENSCPOG00000037956	RPUSD3	89	71.341	ENSCHIG00000026027	RPUSD3	97	71.341	Capra_hircus
ENSCPOG00000037956	RPUSD3	88	65.994	ENSTSYG00000009994	RPUSD3	74	79.518	Carlito_syrichta
ENSCPOG00000037956	RPUSD3	74	99.621	ENSCAPG00000017559	RPUSD3	100	99.621	Cavia_aperea
ENSCPOG00000037956	RPUSD3	86	74.426	ENSCCAG00000029530	RPUSD3	76	79.924	Cebus_capucinus
ENSCPOG00000037956	RPUSD3	86	71.341	ENSCATG00000036939	RPUSD3	93	67.077	Cercocebus_atys
ENSCPOG00000037956	RPUSD3	91	68.406	ENSCSAG00000010506	RPUSD3	98	68.406	Chlorocebus_sabaeus
ENSCPOG00000037956	RPUSD3	59	56.190	ENSCPBG00000008825	RPUSD3	97	52.672	Chrysemys_picta_bellii
ENSCPOG00000037956	RPUSD3	86	77.049	ENSCANG00000040711	RPUSD3	90	74.242	Colobus_angolensis_palliatus
ENSCPOG00000037956	RPUSD3	94	61.905	ENSCGRG00001004923	Rpusd3	99	61.905	Cricetulus_griseus_chok1gshd
ENSCPOG00000037956	RPUSD3	89	64.497	ENSCGRG00000018315	Rpusd3	98	64.497	Cricetulus_griseus_crigri
ENSCPOG00000037956	RPUSD3	89	64.201	ENSDNOG00000039160	RPUSD3	89	64.201	Dasypus_novemcinctus
ENSCPOG00000037956	RPUSD3	74	72.059	ENSDORG00000026827	Rpusd3	92	72.830	Dipodomys_ordii
ENSCPOG00000037956	RPUSD3	90	64.412	ENSETEG00000006538	RPUSD3	75	75.564	Echinops_telfairi
ENSCPOG00000037956	RPUSD3	57	39.216	ENSEBUG00000015605	RPUSD3	61	39.683	Eptatretus_burgeri
ENSCPOG00000037956	RPUSD3	92	66.952	ENSEASG00005014160	RPUSD3	73	80.303	Equus_asinus_asinus
ENSCPOG00000037956	RPUSD3	92	67.806	ENSECAG00000019988	RPUSD3	73	81.439	Equus_caballus
ENSCPOG00000037956	RPUSD3	60	72.642	ENSEEUG00000007353	RPUSD3	60	72.642	Erinaceus_europaeus
ENSCPOG00000037956	RPUSD3	92	67.049	ENSFCAG00000014199	RPUSD3	99	67.049	Felis_catus
ENSCPOG00000037956	RPUSD3	76	47.601	ENSFALG00000012968	RPUSD3	95	48.473	Ficedula_albicollis
ENSCPOG00000037956	RPUSD3	74	88.636	ENSFDAG00000008350	RPUSD3	81	88.636	Fukomys_damarensis
ENSCPOG00000037956	RPUSD3	72	52.672	ENSGAGG00000007493	RPUSD3	84	54.647	Gopherus_agassizii
ENSCPOG00000037956	RPUSD3	91	68.116	ENSGGOG00000013120	RPUSD3	98	68.116	Gorilla_gorilla
ENSCPOG00000037956	RPUSD3	86	83.882	ENSHGLG00000011722	RPUSD3	68	89.773	Heterocephalus_glaber_female
ENSCPOG00000037956	RPUSD3	86	83.882	ENSHGLG00100016038	RPUSD3	68	89.773	Heterocephalus_glaber_male
ENSCPOG00000037956	RPUSD3	91	66.667	ENSSTOG00000002125	RPUSD3	98	66.667	Ictidomys_tridecemlineatus
ENSCPOG00000037956	RPUSD3	90	62.682	ENSJJAG00000012679	Rpusd3	99	62.682	Jaculus_jaculus
ENSCPOG00000037956	RPUSD3	89	65.680	ENSLAFG00000017501	RPUSD3	98	64.793	Loxodonta_africana
ENSCPOG00000037956	RPUSD3	86	70.732	ENSMFAG00000032407	RPUSD3	93	70.732	Macaca_fascicularis
ENSCPOG00000037956	RPUSD3	89	74.132	ENSMMUG00000010628	RPUSD3	97	74.132	Macaca_mulatta
ENSCPOG00000037956	RPUSD3	86	70.732	ENSMNEG00000040308	RPUSD3	98	67.826	Macaca_nemestrina
ENSCPOG00000037956	RPUSD3	88	75.321	ENSMLEG00000033940	RPUSD3	74	81.992	Mandrillus_leucophaeus
ENSCPOG00000037956	RPUSD3	90	64.723	ENSMAUG00000015473	Rpusd3	99	64.723	Mesocricetus_auratus
ENSCPOG00000037956	RPUSD3	85	76.080	ENSMICG00000002315	RPUSD3	77	81.061	Microcebus_murinus
ENSCPOG00000037956	RPUSD3	90	63.265	ENSMOCG00000022613	Rpusd3	99	63.265	Microtus_ochrogaster
ENSCPOG00000037956	RPUSD3	82	57.877	ENSMODG00000005210	RPUSD3	70	61.423	Monodelphis_domestica
ENSCPOG00000037956	RPUSD3	87	65.559	MGP_CAROLIEiJ_G0028725	Rpusd3	96	67.829	Mus_caroli
ENSCPOG00000037956	RPUSD3	90	63.557	ENSMUSG00000051169	Rpusd3	96	67.829	Mus_musculus
ENSCPOG00000037956	RPUSD3	81	71.626	MGP_PahariEiJ_G0022476	Rpusd3	96	67.442	Mus_pahari
ENSCPOG00000037956	RPUSD3	90	63.557	MGP_SPRETEiJ_G0029753	Rpusd3	96	67.442	Mus_spretus
ENSCPOG00000037956	RPUSD3	87	72.930	ENSMPUG00000017132	RPUSD3	75	79.545	Mustela_putorius_furo
ENSCPOG00000037956	RPUSD3	86	76.066	ENSMLUG00000006135	RPUSD3	88	76.066	Myotis_lucifugus
ENSCPOG00000037956	RPUSD3	89	66.369	ENSNGAG00000023704	Rpusd3	99	66.071	Nannospalax_galili
ENSCPOG00000037956	RPUSD3	86	57.229	ENSNLEG00000004214	RPUSD3	73	83.117	Nomascus_leucogenys
ENSCPOG00000037956	RPUSD3	73	65.134	ENSMEUG00000013098	-	100	65.134	Notamacropus_eugenii
ENSCPOG00000037956	RPUSD3	91	55.490	ENSOPRG00000002300	RPUSD3	75	62.264	Ochotona_princeps
ENSCPOG00000037956	RPUSD3	90	75.389	ENSODEG00000018137	RPUSD3	99	75.389	Octodon_degus
ENSCPOG00000037956	RPUSD3	79	46.809	ENSOANG00000012081	-	90	48.649	Ornithorhynchus_anatinus
ENSCPOG00000037956	RPUSD3	89	60.177	ENSOCUG00000027885	RPUSD3	99	60.177	Oryctolagus_cuniculus
ENSCPOG00000037956	RPUSD3	86	73.770	ENSOGAG00000012592	RPUSD3	97	73.770	Otolemur_garnettii
ENSCPOG00000037956	RPUSD3	85	75.082	ENSOARG00000005928	RPUSD3	95	68.732	Ovis_aries
ENSCPOG00000037956	RPUSD3	92	67.816	ENSPPAG00000038083	RPUSD3	99	67.529	Pan_paniscus
ENSCPOG00000037956	RPUSD3	92	66.667	ENSPPRG00000024433	RPUSD3	99	66.667	Panthera_pardus
ENSCPOG00000037956	RPUSD3	87	69.461	ENSPTIG00000006828	RPUSD3	97	69.461	Panthera_tigris_altaica
ENSCPOG00000037956	RPUSD3	92	67.816	ENSPTRG00000051760	RPUSD3	99	67.816	Pan_troglodytes
ENSCPOG00000037956	RPUSD3	86	71.341	ENSPANG00000023885	RPUSD3	93	71.341	Papio_anubis
ENSCPOG00000037956	RPUSD3	90	63.768	ENSPEMG00000017245	Rpusd3	99	63.768	Peromyscus_maniculatus_bairdii
ENSCPOG00000037956	RPUSD3	82	60.616	ENSPCIG00000021901	RPUSD3	78	64.045	Phascolarctos_cinereus
ENSCPOG00000037956	RPUSD3	92	68.103	ENSPPYG00000013676	RPUSD3	99	68.103	Pongo_abelii
ENSCPOG00000037956	RPUSD3	89	69.912	ENSPCOG00000018314	RPUSD3	96	69.322	Propithecus_coquereli
ENSCPOG00000037956	RPUSD3	92	65.330	ENSPVAG00000011107	RPUSD3	99	65.330	Pteropus_vampyrus
ENSCPOG00000037956	RPUSD3	90	61.261	ENSRNOG00000009084	Rpusd3	78	73.092	Rattus_norvegicus
ENSCPOG00000037956	RPUSD3	86	71.951	ENSRBIG00000041230	RPUSD3	93	67.692	Rhinopithecus_bieti
ENSCPOG00000037956	RPUSD3	91	69.275	ENSRROG00000043328	RPUSD3	98	69.275	Rhinopithecus_roxellana
ENSCPOG00000037956	RPUSD3	88	68.358	ENSSBOG00000036106	RPUSD3	75	79.310	Saimiri_boliviensis_boliviensis
ENSCPOG00000037956	RPUSD3	86	56.536	ENSSHAG00000015536	RPUSD3	84	63.218	Sarcophilus_harrisii
ENSCPOG00000037956	RPUSD3	91	67.341	ENSSSCG00000011555	RPUSD3	98	66.763	Sus_scrofa
ENSCPOG00000037956	RPUSD3	66	51.502	ENSTGUG00000008744	RPUSD3	100	51.502	Taeniopygia_guttata
ENSCPOG00000037956	RPUSD3	70	66.667	ENSTBEG00000000176	RPUSD3	93	65.926	Tupaia_belangeri
ENSCPOG00000037956	RPUSD3	92	65.242	ENSTTRG00000007544	RPUSD3	75	79.167	Tursiops_truncatus
ENSCPOG00000037956	RPUSD3	86	72.787	ENSUAMG00000011354	RPUSD3	82	78.788	Ursus_americanus
ENSCPOG00000037956	RPUSD3	92	66.476	ENSUMAG00000018830	RPUSD3	99	66.476	Ursus_maritimus
ENSCPOG00000037956	RPUSD3	86	72.787	ENSVVUG00000023735	RPUSD3	77	78.788	Vulpes_vulpes
ENSCPOG00000037956	RPUSD3	78	45.000	ENSXETG00000023546	rpusd3	93	46.768	Xenopus_tropicalis